data_1QXR
#
_model_server_result.job_id            3VY71g27EFDrU-beyPyKBg 
_model_server_result.datetime_utc      '2024-11-27 19:05:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qxr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    1QXR 
#
_exptl.entry_id    1QXR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              246.109 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-PHOSPHOARABINONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         73.7 
_cell.angle_beta          78.5 
_cell.angle_gamma         72.6 
_cell.entry_id            1QXR 
_cell.length_a            36 
_cell.length_b            39.7 
_cell.length_c            74.7 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QXR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 88 A HIS 88 1_555 C NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 A OE2 GLU 97 A GLU 97 1_555 C NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc3 A NE2 HIS 136 A HIS 136 1_555 C NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc4 C NI NI . A NI 200 1_555 D O1A PA5 . A PA5 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc5 C NI NI . A NI 200 1_555 G O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc6 B NE2 HIS 88 B HIS 88 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc7 B NE2 HIS 90 B HIS 90 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc8 B OE2 GLU 97 B GLU 97 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc9 B NE2 HIS 136 B HIS 136 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc10 E NI NI . B NI 201 1_555 F O1A PA5 . B PA5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc11 E NI NI . B NI 201 1_555 H O HOH . B HOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
#
_chem_comp.formula           'C5 H11 O9 P' 
_chem_comp.formula_weight    246.109 
_chem_comp.id                PA5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-PHOSPHOARABINONIC ACID' 
_chem_comp.type              saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1A C1 PA5 doub 224 n n 
C1 O1 PA5 sing 225 n n 
C1 C2 PA5 sing 226 n n 
O1 HO1 PA5 sing 227 n n 
C2 O2 PA5 sing 228 n n 
C2 C3 PA5 sing 229 n n 
C2 HC2 PA5 sing 230 n n 
O2 HO2 PA5 sing 231 n n 
C3 O3 PA5 sing 232 n n 
C3 C4 PA5 sing 233 n n 
C3 HC3 PA5 sing 234 n n 
O3 HO3 PA5 sing 235 n n 
C4 O4 PA5 sing 236 n n 
C4 C5 PA5 sing 237 n n 
C4 HC4 PA5 sing 238 n n 
O4 HO4 PA5 sing 239 n n 
C5 O5 PA5 sing 240 n n 
C5 H51 PA5 sing 241 n n 
C5 H52 PA5 sing 242 n n 
O5 P PA5 sing 243 n n 
P O1P PA5 doub 244 n n 
P O2P PA5 sing 245 n n 
P O3P PA5 sing 246 n n 
O2P HOP2 PA5 sing 247 n n 
O3P HOP3 PA5 sing 248 n n 
#
_atom_sites.entry_id                     1QXR 
_atom_sites.fract_transf_matrix[1][1]    0.027797 
_atom_sites.fract_transf_matrix[1][2]    -0.008693 
_atom_sites.fract_transf_matrix[1][3]    -0.003708 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02637 
_atom_sites.fract_transf_matrix[2][3]    -0.006404 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 200 200 NI FE . 
D 3 PA5 A 1 300 300 PA5 PA5 . 
E 2 NI B 1 201 200 NI FE . 
F 3 PA5 B 1 301 300 PA5 PA5 . 
G 4 HOH A 1 301 4 HOH HOH . 
G 4 HOH A 2 302 5 HOH HOH . 
G 4 HOH A 3 303 6 HOH HOH . 
G 4 HOH A 4 304 7 HOH HOH . 
G 4 HOH A 5 305 10 HOH HOH . 
G 4 HOH A 6 306 12 HOH HOH . 
G 4 HOH A 7 307 18 HOH HOH . 
G 4 HOH A 8 308 19 HOH HOH . 
G 4 HOH A 9 309 21 HOH HOH . 
G 4 HOH A 10 310 26 HOH HOH . 
G 4 HOH A 11 311 27 HOH HOH . 
G 4 HOH A 12 312 28 HOH HOH . 
G 4 HOH A 13 313 29 HOH HOH . 
G 4 HOH A 14 314 34 HOH HOH . 
G 4 HOH A 15 315 35 HOH HOH . 
G 4 HOH A 16 316 36 HOH HOH . 
G 4 HOH A 17 317 37 HOH HOH . 
G 4 HOH A 18 318 44 HOH HOH . 
G 4 HOH A 19 319 47 HOH HOH . 
G 4 HOH A 20 320 51 HOH HOH . 
G 4 HOH A 21 321 53 HOH HOH . 
G 4 HOH A 22 322 54 HOH HOH . 
G 4 HOH A 23 323 56 HOH HOH . 
G 4 HOH A 24 324 60 HOH HOH . 
G 4 HOH A 25 325 61 HOH HOH . 
G 4 HOH A 26 326 62 HOH HOH . 
G 4 HOH A 27 327 73 HOH HOH . 
G 4 HOH A 28 328 74 HOH HOH . 
G 4 HOH A 29 329 75 HOH HOH . 
G 4 HOH A 30 330 79 HOH HOH . 
G 4 HOH A 31 331 80 HOH HOH . 
G 4 HOH A 32 332 82 HOH HOH . 
G 4 HOH A 33 333 84 HOH HOH . 
G 4 HOH A 34 334 85 HOH HOH . 
G 4 HOH A 35 335 92 HOH HOH . 
G 4 HOH A 36 336 93 HOH HOH . 
G 4 HOH A 37 337 94 HOH HOH . 
G 4 HOH A 38 338 97 HOH HOH . 
G 4 HOH A 39 339 100 HOH HOH . 
G 4 HOH A 40 340 103 HOH HOH . 
G 4 HOH A 41 341 117 HOH HOH . 
G 4 HOH A 42 342 119 HOH HOH . 
G 4 HOH A 43 343 121 HOH HOH . 
G 4 HOH A 44 344 122 HOH HOH . 
G 4 HOH A 45 345 123 HOH HOH . 
G 4 HOH A 46 346 124 HOH HOH . 
G 4 HOH A 47 347 126 HOH HOH . 
H 4 HOH B 1 302 1 HOH HOH . 
H 4 HOH B 2 303 2 HOH HOH . 
H 4 HOH B 3 304 3 HOH HOH . 
H 4 HOH B 4 305 8 HOH HOH . 
H 4 HOH B 5 306 9 HOH HOH . 
H 4 HOH B 6 307 11 HOH HOH . 
H 4 HOH B 7 308 13 HOH HOH . 
H 4 HOH B 8 309 14 HOH HOH . 
H 4 HOH B 9 310 15 HOH HOH . 
H 4 HOH B 10 311 16 HOH HOH . 
H 4 HOH B 11 312 17 HOH HOH . 
H 4 HOH B 12 313 20 HOH HOH . 
H 4 HOH B 13 314 22 HOH HOH . 
H 4 HOH B 14 315 23 HOH HOH . 
H 4 HOH B 15 316 24 HOH HOH . 
H 4 HOH B 16 317 25 HOH HOH . 
H 4 HOH B 17 318 30 HOH HOH . 
H 4 HOH B 18 319 31 HOH HOH . 
H 4 HOH B 19 320 32 HOH HOH . 
H 4 HOH B 20 321 33 HOH HOH . 
H 4 HOH B 21 322 38 HOH HOH . 
H 4 HOH B 22 323 39 HOH HOH . 
H 4 HOH B 23 324 40 HOH HOH . 
H 4 HOH B 24 325 41 HOH HOH . 
H 4 HOH B 25 326 42 HOH HOH . 
H 4 HOH B 26 327 43 HOH HOH . 
H 4 HOH B 27 328 45 HOH HOH . 
H 4 HOH B 28 329 46 HOH HOH . 
H 4 HOH B 29 330 48 HOH HOH . 
H 4 HOH B 30 331 49 HOH HOH . 
H 4 HOH B 31 332 50 HOH HOH . 
H 4 HOH B 32 333 52 HOH HOH . 
H 4 HOH B 33 334 55 HOH HOH . 
H 4 HOH B 34 335 57 HOH HOH . 
H 4 HOH B 35 336 58 HOH HOH . 
H 4 HOH B 36 337 59 HOH HOH . 
H 4 HOH B 37 338 63 HOH HOH . 
H 4 HOH B 38 339 64 HOH HOH . 
H 4 HOH B 39 340 65 HOH HOH . 
H 4 HOH B 40 341 66 HOH HOH . 
H 4 HOH B 41 342 67 HOH HOH . 
H 4 HOH B 42 343 68 HOH HOH . 
H 4 HOH B 43 344 69 HOH HOH . 
H 4 HOH B 44 345 70 HOH HOH . 
H 4 HOH B 45 346 71 HOH HOH . 
H 4 HOH B 46 347 72 HOH HOH . 
H 4 HOH B 47 348 76 HOH HOH . 
H 4 HOH B 48 349 77 HOH HOH . 
H 4 HOH B 49 350 78 HOH HOH . 
H 4 HOH B 50 351 81 HOH HOH . 
H 4 HOH B 51 352 83 HOH HOH . 
H 4 HOH B 52 353 86 HOH HOH . 
H 4 HOH B 53 354 87 HOH HOH . 
H 4 HOH B 54 355 88 HOH HOH . 
H 4 HOH B 55 356 89 HOH HOH . 
H 4 HOH B 56 357 90 HOH HOH . 
H 4 HOH B 57 358 91 HOH HOH . 
H 4 HOH B 58 359 95 HOH HOH . 
H 4 HOH B 59 360 96 HOH HOH . 
H 4 HOH B 60 361 98 HOH HOH . 
H 4 HOH B 61 362 99 HOH HOH . 
H 4 HOH B 62 363 101 HOH HOH . 
H 4 HOH B 63 364 102 HOH HOH . 
H 4 HOH B 64 365 104 HOH HOH . 
H 4 HOH B 65 366 105 HOH HOH . 
H 4 HOH B 66 367 106 HOH HOH . 
H 4 HOH B 67 368 107 HOH HOH . 
H 4 HOH B 68 369 108 HOH HOH . 
H 4 HOH B 69 370 109 HOH HOH . 
H 4 HOH B 70 371 110 HOH HOH . 
H 4 HOH B 71 372 111 HOH HOH . 
H 4 HOH B 72 373 112 HOH HOH . 
H 4 HOH B 73 374 113 HOH HOH . 
H 4 HOH B 74 375 114 HOH HOH . 
H 4 HOH B 75 376 115 HOH HOH . 
H 4 HOH B 76 377 116 HOH HOH . 
H 4 HOH B 77 378 118 HOH HOH . 
H 4 HOH B 78 379 120 HOH HOH . 
H 4 HOH B 79 380 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1A PA5 . . . D 3 3.369 1.743 11.47 1 25.76 ? O1A PA5 300 A 1 
HETATM 2 C C1 PA5 . . . D 3 4.19 1.482 10.59 1 29.94 ? C1 PA5 300 A 1 
HETATM 3 O O1 PA5 . . . D 3 4.495 2.279 9.695 1 32.89 ? O1 PA5 300 A 1 
HETATM 4 C C2 PA5 . . . D 3 4.899 0.161 10.616 1 29.86 ? C2 PA5 300 A 1 
HETATM 5 O O2 PA5 . . . D 3 5.865 0.25 9.574 1 27.24 ? O2 PA5 300 A 1 
HETATM 6 C C3 PA5 . . . D 3 5.613 0.022 11.952 1 30.84 ? C3 PA5 300 A 1 
HETATM 7 O O3 PA5 . . . D 3 6.427 1.173 12.163 1 32.01 ? O3 PA5 300 A 1 
HETATM 8 C C4 PA5 . . . D 3 6.511 -1.214 11.922 1 29.99 ? C4 PA5 300 A 1 
HETATM 9 O O4 PA5 . . . D 3 5.681 -2.325 11.719 1 26.33 ? O4 PA5 300 A 1 
HETATM 10 C C5 PA5 . . . D 3 7.265 -1.422 13.226 1 29.89 ? C5 PA5 300 A 1 
HETATM 11 O O5 PA5 . . . D 3 6.346 -1.19 14.299 1 28.97 ? O5 PA5 300 A 1 
HETATM 12 P P PA5 . . . D 3 6.699 -0.059 15.4 1 31.24 ? P PA5 300 A 1 
HETATM 13 O O1P PA5 . . . D 3 7.916 -0.577 16.141 1 33.07 ? O1P PA5 300 A 1 
HETATM 14 O O2P PA5 . . . D 3 6.959 1.196 14.611 1 30.96 ? O2P PA5 300 A 1 
HETATM 15 O O3P PA5 . . . D 3 5.44 0.062 16.233 1 26.7 ? O3P PA5 300 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           15 
#