data_1QY4
#
_model_server_result.job_id            owrnH2DJFFtxc4kovwzF3g 
_model_server_result.datetime_utc      '2024-10-16 10:40:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qy4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":210}' 
#
_entry.id    1QY4 
#
_exptl.entry_id    1QY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         73.7 
_cell.angle_beta          78.5 
_cell.angle_gamma         72.6 
_cell.entry_id            1QY4 
_cell.length_a            36 
_cell.length_b            39.7 
_cell.length_c            74.7 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 88 A HIS 88 1_555 D NI NI . A NI 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc2 A OE2 GLU 97 A GLU 97 1_555 D NI NI . A NI 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? 
metalc ? metalc3 A OE1 GLU 97 A GLU 97 1_555 D NI NI . A NI 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc4 A NE2 HIS 136 A HIS 136 1_555 D NI NI . A NI 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc5 D NI NI . A NI 210 1_555 C O2 6PG . A 6PG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc6 D NI NI . A NI 210 1_555 C O1A 6PG . A 6PG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc7 B NE2 HIS 88 B HIS 88 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc8 B NE2 HIS 90 B HIS 90 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc9 B OE2 GLU 97 B GLU 97 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? 
metalc ? metalc10 B OE1 GLU 97 B GLU 97 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? 
metalc ? metalc11 B NE2 HIS 136 B HIS 136 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc12 F NI NI . B NI 211 1_555 E O1A 6PG . B 6PG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc13 F NI NI . B NI 211 1_555 E O2 6PG . B 6PG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1QY4 
_atom_sites.fract_transf_matrix[1][1]    0.027797 
_atom_sites.fract_transf_matrix[1][2]    -0.008693 
_atom_sites.fract_transf_matrix[1][3]    -0.003708 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02637 
_atom_sites.fract_transf_matrix[2][3]    -0.006404 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6PG A 1 300 300 6PG 6PG . 
D 3 NI A 1 210 200 NI FE . 
E 2 6PG B 1 301 300 6PG 6PG . 
F 3 NI B 1 211 200 NI FE . 
G 4 HOH A 1 301 4 HOH HOH . 
G 4 HOH A 2 302 5 HOH HOH . 
G 4 HOH A 3 303 6 HOH HOH . 
G 4 HOH A 4 304 7 HOH HOH . 
G 4 HOH A 5 305 10 HOH HOH . 
G 4 HOH A 6 306 12 HOH HOH . 
G 4 HOH A 7 307 19 HOH HOH . 
G 4 HOH A 8 308 20 HOH HOH . 
G 4 HOH A 9 309 22 HOH HOH . 
G 4 HOH A 10 310 23 HOH HOH . 
G 4 HOH A 11 311 24 HOH HOH . 
G 4 HOH A 12 312 28 HOH HOH . 
G 4 HOH A 13 313 32 HOH HOH . 
G 4 HOH A 14 314 33 HOH HOH . 
G 4 HOH A 15 315 34 HOH HOH . 
G 4 HOH A 16 316 39 HOH HOH . 
G 4 HOH A 17 317 40 HOH HOH . 
G 4 HOH A 18 318 41 HOH HOH . 
G 4 HOH A 19 319 46 HOH HOH . 
G 4 HOH A 20 320 50 HOH HOH . 
G 4 HOH A 21 321 51 HOH HOH . 
G 4 HOH A 22 322 52 HOH HOH . 
G 4 HOH A 23 323 53 HOH HOH . 
G 4 HOH A 24 324 59 HOH HOH . 
G 4 HOH A 25 325 61 HOH HOH . 
G 4 HOH A 26 326 62 HOH HOH . 
G 4 HOH A 27 327 64 HOH HOH . 
G 4 HOH A 28 328 65 HOH HOH . 
G 4 HOH A 29 329 69 HOH HOH . 
G 4 HOH A 30 330 70 HOH HOH . 
G 4 HOH A 31 331 71 HOH HOH . 
G 4 HOH A 32 332 72 HOH HOH . 
G 4 HOH A 33 333 78 HOH HOH . 
G 4 HOH A 34 334 80 HOH HOH . 
G 4 HOH A 35 335 82 HOH HOH . 
G 4 HOH A 36 336 84 HOH HOH . 
G 4 HOH A 37 337 88 HOH HOH . 
G 4 HOH A 38 338 89 HOH HOH . 
G 4 HOH A 39 339 90 HOH HOH . 
G 4 HOH A 40 340 91 HOH HOH . 
G 4 HOH A 41 341 93 HOH HOH . 
G 4 HOH A 42 342 98 HOH HOH . 
G 4 HOH A 43 343 100 HOH HOH . 
G 4 HOH A 44 344 102 HOH HOH . 
G 4 HOH A 45 345 104 HOH HOH . 
G 4 HOH A 46 346 107 HOH HOH . 
G 4 HOH A 47 347 109 HOH HOH . 
G 4 HOH A 48 348 111 HOH HOH . 
G 4 HOH A 49 349 112 HOH HOH . 
G 4 HOH A 50 350 113 HOH HOH . 
G 4 HOH A 51 351 116 HOH HOH . 
G 4 HOH A 52 352 120 HOH HOH . 
G 4 HOH A 53 353 122 HOH HOH . 
G 4 HOH A 54 354 124 HOH HOH . 
G 4 HOH A 55 355 125 HOH HOH . 
G 4 HOH A 56 356 127 HOH HOH . 
G 4 HOH A 57 357 130 HOH HOH . 
G 4 HOH A 58 358 131 HOH HOH . 
G 4 HOH A 59 359 133 HOH HOH . 
G 4 HOH A 60 360 134 HOH HOH . 
G 4 HOH A 61 361 135 HOH HOH . 
G 4 HOH A 62 362 136 HOH HOH . 
G 4 HOH A 63 363 137 HOH HOH . 
G 4 HOH A 64 364 138 HOH HOH . 
G 4 HOH A 65 365 141 HOH HOH . 
G 4 HOH A 66 366 144 HOH HOH . 
G 4 HOH A 67 367 145 HOH HOH . 
G 4 HOH A 68 368 147 HOH HOH . 
G 4 HOH A 69 369 148 HOH HOH . 
G 4 HOH A 70 370 150 HOH HOH . 
G 4 HOH A 71 371 152 HOH HOH . 
G 4 HOH A 72 372 156 HOH HOH . 
G 4 HOH A 73 373 161 HOH HOH . 
G 4 HOH A 74 374 162 HOH HOH . 
G 4 HOH A 75 375 164 HOH HOH . 
G 4 HOH A 76 376 166 HOH HOH . 
G 4 HOH A 77 377 175 HOH HOH . 
G 4 HOH A 78 378 178 HOH HOH . 
G 4 HOH A 79 379 179 HOH HOH . 
G 4 HOH A 80 380 183 HOH HOH . 
G 4 HOH A 81 381 190 HOH HOH . 
G 4 HOH A 82 382 193 HOH HOH . 
G 4 HOH A 83 383 194 HOH HOH . 
G 4 HOH A 84 384 195 HOH HOH . 
G 4 HOH A 85 385 196 HOH HOH . 
G 4 HOH A 86 386 198 HOH HOH . 
G 4 HOH A 87 387 199 HOH HOH . 
G 4 HOH A 88 388 201 HOH HOH . 
G 4 HOH A 89 389 202 HOH HOH . 
H 4 HOH B 1 302 1 HOH HOH . 
H 4 HOH B 2 303 2 HOH HOH . 
H 4 HOH B 3 304 3 HOH HOH . 
H 4 HOH B 4 305 8 HOH HOH . 
H 4 HOH B 5 306 9 HOH HOH . 
H 4 HOH B 6 307 11 HOH HOH . 
H 4 HOH B 7 308 13 HOH HOH . 
H 4 HOH B 8 309 14 HOH HOH . 
H 4 HOH B 9 310 15 HOH HOH . 
H 4 HOH B 10 311 16 HOH HOH . 
H 4 HOH B 11 312 17 HOH HOH . 
H 4 HOH B 12 313 18 HOH HOH . 
H 4 HOH B 13 314 21 HOH HOH . 
H 4 HOH B 14 315 25 HOH HOH . 
H 4 HOH B 15 316 26 HOH HOH . 
H 4 HOH B 16 317 27 HOH HOH . 
H 4 HOH B 17 318 29 HOH HOH . 
H 4 HOH B 18 319 30 HOH HOH . 
H 4 HOH B 19 320 31 HOH HOH . 
H 4 HOH B 20 321 35 HOH HOH . 
H 4 HOH B 21 322 36 HOH HOH . 
H 4 HOH B 22 323 37 HOH HOH . 
H 4 HOH B 23 324 38 HOH HOH . 
H 4 HOH B 24 325 42 HOH HOH . 
H 4 HOH B 25 326 43 HOH HOH . 
H 4 HOH B 26 327 44 HOH HOH . 
H 4 HOH B 27 328 45 HOH HOH . 
H 4 HOH B 28 329 47 HOH HOH . 
H 4 HOH B 29 330 48 HOH HOH . 
H 4 HOH B 30 331 49 HOH HOH . 
H 4 HOH B 31 332 54 HOH HOH . 
H 4 HOH B 32 333 55 HOH HOH . 
H 4 HOH B 33 334 56 HOH HOH . 
H 4 HOH B 34 335 57 HOH HOH . 
H 4 HOH B 35 336 58 HOH HOH . 
H 4 HOH B 36 337 60 HOH HOH . 
H 4 HOH B 37 338 63 HOH HOH . 
H 4 HOH B 38 339 66 HOH HOH . 
H 4 HOH B 39 340 67 HOH HOH . 
H 4 HOH B 40 341 68 HOH HOH . 
H 4 HOH B 41 342 73 HOH HOH . 
H 4 HOH B 42 343 74 HOH HOH . 
H 4 HOH B 43 344 75 HOH HOH . 
H 4 HOH B 44 345 76 HOH HOH . 
H 4 HOH B 45 346 77 HOH HOH . 
H 4 HOH B 46 347 79 HOH HOH . 
H 4 HOH B 47 348 81 HOH HOH . 
H 4 HOH B 48 349 83 HOH HOH . 
H 4 HOH B 49 350 85 HOH HOH . 
H 4 HOH B 50 351 86 HOH HOH . 
H 4 HOH B 51 352 87 HOH HOH . 
H 4 HOH B 52 353 92 HOH HOH . 
H 4 HOH B 53 354 94 HOH HOH . 
H 4 HOH B 54 355 95 HOH HOH . 
H 4 HOH B 55 356 96 HOH HOH . 
H 4 HOH B 56 357 97 HOH HOH . 
H 4 HOH B 57 358 99 HOH HOH . 
H 4 HOH B 58 359 101 HOH HOH . 
H 4 HOH B 59 360 103 HOH HOH . 
H 4 HOH B 60 361 105 HOH HOH . 
H 4 HOH B 61 362 106 HOH HOH . 
H 4 HOH B 62 363 108 HOH HOH . 
H 4 HOH B 63 364 110 HOH HOH . 
H 4 HOH B 64 365 114 HOH HOH . 
H 4 HOH B 65 366 115 HOH HOH . 
H 4 HOH B 66 367 117 HOH HOH . 
H 4 HOH B 67 368 118 HOH HOH . 
H 4 HOH B 68 369 119 HOH HOH . 
H 4 HOH B 69 370 121 HOH HOH . 
H 4 HOH B 70 371 123 HOH HOH . 
H 4 HOH B 71 372 126 HOH HOH . 
H 4 HOH B 72 373 128 HOH HOH . 
H 4 HOH B 73 374 129 HOH HOH . 
H 4 HOH B 74 375 132 HOH HOH . 
H 4 HOH B 75 376 139 HOH HOH . 
H 4 HOH B 76 377 140 HOH HOH . 
H 4 HOH B 77 378 142 HOH HOH . 
H 4 HOH B 78 379 143 HOH HOH . 
H 4 HOH B 79 380 146 HOH HOH . 
H 4 HOH B 80 381 149 HOH HOH . 
H 4 HOH B 81 382 151 HOH HOH . 
H 4 HOH B 82 383 153 HOH HOH . 
H 4 HOH B 83 384 154 HOH HOH . 
H 4 HOH B 84 385 155 HOH HOH . 
H 4 HOH B 85 386 157 HOH HOH . 
H 4 HOH B 86 387 158 HOH HOH . 
H 4 HOH B 87 388 159 HOH HOH . 
H 4 HOH B 88 389 160 HOH HOH . 
H 4 HOH B 89 390 163 HOH HOH . 
H 4 HOH B 90 391 165 HOH HOH . 
H 4 HOH B 91 392 167 HOH HOH . 
H 4 HOH B 92 393 168 HOH HOH . 
H 4 HOH B 93 394 169 HOH HOH . 
H 4 HOH B 94 395 170 HOH HOH . 
H 4 HOH B 95 396 171 HOH HOH . 
H 4 HOH B 96 397 172 HOH HOH . 
H 4 HOH B 97 398 173 HOH HOH . 
H 4 HOH B 98 399 174 HOH HOH . 
H 4 HOH B 99 400 176 HOH HOH . 
H 4 HOH B 100 401 177 HOH HOH . 
H 4 HOH B 101 402 180 HOH HOH . 
H 4 HOH B 102 403 181 HOH HOH . 
H 4 HOH B 103 404 182 HOH HOH . 
H 4 HOH B 104 405 184 HOH HOH . 
H 4 HOH B 105 406 185 HOH HOH . 
H 4 HOH B 106 407 186 HOH HOH . 
H 4 HOH B 107 408 187 HOH HOH . 
H 4 HOH B 108 409 188 HOH HOH . 
H 4 HOH B 109 410 189 HOH HOH . 
H 4 HOH B 110 411 191 HOH HOH . 
H 4 HOH B 111 412 192 HOH HOH . 
H 4 HOH B 112 413 197 HOH HOH . 
H 4 HOH B 113 414 200 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               2.141 
_atom_site.Cartn_y               3.429 
_atom_site.Cartn_z               12.015 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        42.87 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           210 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#