data_1QY4 # _model_server_result.job_id '_nIX2YM_mYx1J9w3HsOIow' _model_server_result.datetime_utc '2024-11-24 04:51:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1QY4 # _exptl.entry_id 1QY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.135 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-PHOSPHOGLUCONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 73.7 _cell.angle_beta 78.5 _cell.angle_gamma 72.6 _cell.entry_id 1QY4 _cell.length_a 36 _cell.length_b 39.7 _cell.length_c 74.7 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 88 A HIS 88 1_555 D NI NI . A NI 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc2 A OE2 GLU 97 A GLU 97 1_555 D NI NI . A NI 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? metalc ? metalc3 A OE1 GLU 97 A GLU 97 1_555 D NI NI . A NI 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc4 A NE2 HIS 136 A HIS 136 1_555 D NI NI . A NI 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc5 D NI NI . A NI 210 1_555 C O2 6PG . A 6PG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc6 D NI NI . A NI 210 1_555 C O1A 6PG . A 6PG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 B NE2 HIS 88 B HIS 88 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc8 B NE2 HIS 90 B HIS 90 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc9 B OE2 GLU 97 B GLU 97 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc10 B OE1 GLU 97 B GLU 97 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? metalc ? metalc11 B NE2 HIS 136 B HIS 136 1_555 F NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc12 F NI NI . B NI 211 1_555 E O1A 6PG . B 6PG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc13 F NI NI . B NI 211 1_555 E O2 6PG . B 6PG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'C6 H13 O10 P' _chem_comp.formula_weight 276.135 _chem_comp.id 6PG _chem_comp.mon_nstd_flag . _chem_comp.name '6-PHOSPHOGLUCONIC ACID' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 6PG sing 1 n n C1 O1A 6PG doub 2 n n C1 O1 6PG sing 3 n n C2 C3 6PG sing 4 n n C2 O2 6PG sing 5 n n C2 H2 6PG sing 6 n n C3 C4 6PG sing 7 n n C3 O3 6PG sing 8 n n C3 H3 6PG sing 9 n n C4 C5 6PG sing 10 n n C4 O4 6PG sing 11 n n C4 H4 6PG sing 12 n n C5 C6 6PG sing 13 n n C5 O5 6PG sing 14 n n C5 H5 6PG sing 15 n n C6 O6 6PG sing 16 n n C6 H61 6PG sing 17 n n C6 H62 6PG sing 18 n n O1 HO1 6PG sing 19 n n O2 HO2 6PG sing 20 n n O3 HO3 6PG sing 21 n n O4 HO4 6PG sing 22 n n O5 HO5 6PG sing 23 n n O6 P 6PG sing 24 n n P O1P 6PG doub 25 n n P O2P 6PG sing 26 n n P O3P 6PG sing 27 n n O2P HOP2 6PG sing 28 n n O3P HOP3 6PG sing 29 n n # _atom_sites.entry_id 1QY4 _atom_sites.fract_transf_matrix[1][1] 0.027797 _atom_sites.fract_transf_matrix[1][2] -0.008693 _atom_sites.fract_transf_matrix[1][3] -0.003708 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02637 _atom_sites.fract_transf_matrix[2][3] -0.006404 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6PG A 1 300 300 6PG 6PG . D 3 NI A 1 210 200 NI FE . E 2 6PG B 1 301 300 6PG 6PG . F 3 NI B 1 211 200 NI FE . G 4 HOH A 1 301 4 HOH HOH . G 4 HOH A 2 302 5 HOH HOH . G 4 HOH A 3 303 6 HOH HOH . G 4 HOH A 4 304 7 HOH HOH . G 4 HOH A 5 305 10 HOH HOH . G 4 HOH A 6 306 12 HOH HOH . G 4 HOH A 7 307 19 HOH HOH . G 4 HOH A 8 308 20 HOH HOH . G 4 HOH A 9 309 22 HOH HOH . G 4 HOH A 10 310 23 HOH HOH . G 4 HOH A 11 311 24 HOH HOH . G 4 HOH A 12 312 28 HOH HOH . G 4 HOH A 13 313 32 HOH HOH . G 4 HOH A 14 314 33 HOH HOH . G 4 HOH A 15 315 34 HOH HOH . G 4 HOH A 16 316 39 HOH HOH . G 4 HOH A 17 317 40 HOH HOH . G 4 HOH A 18 318 41 HOH HOH . G 4 HOH A 19 319 46 HOH HOH . G 4 HOH A 20 320 50 HOH HOH . G 4 HOH A 21 321 51 HOH HOH . G 4 HOH A 22 322 52 HOH HOH . G 4 HOH A 23 323 53 HOH HOH . G 4 HOH A 24 324 59 HOH HOH . G 4 HOH A 25 325 61 HOH HOH . G 4 HOH A 26 326 62 HOH HOH . G 4 HOH A 27 327 64 HOH HOH . G 4 HOH A 28 328 65 HOH HOH . G 4 HOH A 29 329 69 HOH HOH . G 4 HOH A 30 330 70 HOH HOH . G 4 HOH A 31 331 71 HOH HOH . G 4 HOH A 32 332 72 HOH HOH . G 4 HOH A 33 333 78 HOH HOH . G 4 HOH A 34 334 80 HOH HOH . G 4 HOH A 35 335 82 HOH HOH . G 4 HOH A 36 336 84 HOH HOH . G 4 HOH A 37 337 88 HOH HOH . G 4 HOH A 38 338 89 HOH HOH . G 4 HOH A 39 339 90 HOH HOH . G 4 HOH A 40 340 91 HOH HOH . G 4 HOH A 41 341 93 HOH HOH . G 4 HOH A 42 342 98 HOH HOH . G 4 HOH A 43 343 100 HOH HOH . G 4 HOH A 44 344 102 HOH HOH . G 4 HOH A 45 345 104 HOH HOH . G 4 HOH A 46 346 107 HOH HOH . G 4 HOH A 47 347 109 HOH HOH . G 4 HOH A 48 348 111 HOH HOH . G 4 HOH A 49 349 112 HOH HOH . G 4 HOH A 50 350 113 HOH HOH . G 4 HOH A 51 351 116 HOH HOH . G 4 HOH A 52 352 120 HOH HOH . G 4 HOH A 53 353 122 HOH HOH . G 4 HOH A 54 354 124 HOH HOH . G 4 HOH A 55 355 125 HOH HOH . G 4 HOH A 56 356 127 HOH HOH . G 4 HOH A 57 357 130 HOH HOH . G 4 HOH A 58 358 131 HOH HOH . G 4 HOH A 59 359 133 HOH HOH . G 4 HOH A 60 360 134 HOH HOH . G 4 HOH A 61 361 135 HOH HOH . G 4 HOH A 62 362 136 HOH HOH . G 4 HOH A 63 363 137 HOH HOH . G 4 HOH A 64 364 138 HOH HOH . G 4 HOH A 65 365 141 HOH HOH . G 4 HOH A 66 366 144 HOH HOH . G 4 HOH A 67 367 145 HOH HOH . G 4 HOH A 68 368 147 HOH HOH . G 4 HOH A 69 369 148 HOH HOH . G 4 HOH A 70 370 150 HOH HOH . G 4 HOH A 71 371 152 HOH HOH . G 4 HOH A 72 372 156 HOH HOH . G 4 HOH A 73 373 161 HOH HOH . G 4 HOH A 74 374 162 HOH HOH . G 4 HOH A 75 375 164 HOH HOH . G 4 HOH A 76 376 166 HOH HOH . G 4 HOH A 77 377 175 HOH HOH . G 4 HOH A 78 378 178 HOH HOH . G 4 HOH A 79 379 179 HOH HOH . G 4 HOH A 80 380 183 HOH HOH . G 4 HOH A 81 381 190 HOH HOH . G 4 HOH A 82 382 193 HOH HOH . G 4 HOH A 83 383 194 HOH HOH . G 4 HOH A 84 384 195 HOH HOH . G 4 HOH A 85 385 196 HOH HOH . G 4 HOH A 86 386 198 HOH HOH . G 4 HOH A 87 387 199 HOH HOH . G 4 HOH A 88 388 201 HOH HOH . G 4 HOH A 89 389 202 HOH HOH . H 4 HOH B 1 302 1 HOH HOH . H 4 HOH B 2 303 2 HOH HOH . H 4 HOH B 3 304 3 HOH HOH . H 4 HOH B 4 305 8 HOH HOH . H 4 HOH B 5 306 9 HOH HOH . H 4 HOH B 6 307 11 HOH HOH . H 4 HOH B 7 308 13 HOH HOH . H 4 HOH B 8 309 14 HOH HOH . H 4 HOH B 9 310 15 HOH HOH . H 4 HOH B 10 311 16 HOH HOH . H 4 HOH B 11 312 17 HOH HOH . H 4 HOH B 12 313 18 HOH HOH . H 4 HOH B 13 314 21 HOH HOH . H 4 HOH B 14 315 25 HOH HOH . H 4 HOH B 15 316 26 HOH HOH . H 4 HOH B 16 317 27 HOH HOH . H 4 HOH B 17 318 29 HOH HOH . H 4 HOH B 18 319 30 HOH HOH . H 4 HOH B 19 320 31 HOH HOH . H 4 HOH B 20 321 35 HOH HOH . H 4 HOH B 21 322 36 HOH HOH . H 4 HOH B 22 323 37 HOH HOH . H 4 HOH B 23 324 38 HOH HOH . H 4 HOH B 24 325 42 HOH HOH . H 4 HOH B 25 326 43 HOH HOH . H 4 HOH B 26 327 44 HOH HOH . H 4 HOH B 27 328 45 HOH HOH . H 4 HOH B 28 329 47 HOH HOH . H 4 HOH B 29 330 48 HOH HOH . H 4 HOH B 30 331 49 HOH HOH . H 4 HOH B 31 332 54 HOH HOH . H 4 HOH B 32 333 55 HOH HOH . H 4 HOH B 33 334 56 HOH HOH . H 4 HOH B 34 335 57 HOH HOH . H 4 HOH B 35 336 58 HOH HOH . H 4 HOH B 36 337 60 HOH HOH . H 4 HOH B 37 338 63 HOH HOH . H 4 HOH B 38 339 66 HOH HOH . H 4 HOH B 39 340 67 HOH HOH . H 4 HOH B 40 341 68 HOH HOH . H 4 HOH B 41 342 73 HOH HOH . H 4 HOH B 42 343 74 HOH HOH . H 4 HOH B 43 344 75 HOH HOH . H 4 HOH B 44 345 76 HOH HOH . H 4 HOH B 45 346 77 HOH HOH . H 4 HOH B 46 347 79 HOH HOH . H 4 HOH B 47 348 81 HOH HOH . H 4 HOH B 48 349 83 HOH HOH . H 4 HOH B 49 350 85 HOH HOH . H 4 HOH B 50 351 86 HOH HOH . H 4 HOH B 51 352 87 HOH HOH . H 4 HOH B 52 353 92 HOH HOH . H 4 HOH B 53 354 94 HOH HOH . H 4 HOH B 54 355 95 HOH HOH . H 4 HOH B 55 356 96 HOH HOH . H 4 HOH B 56 357 97 HOH HOH . H 4 HOH B 57 358 99 HOH HOH . H 4 HOH B 58 359 101 HOH HOH . H 4 HOH B 59 360 103 HOH HOH . H 4 HOH B 60 361 105 HOH HOH . H 4 HOH B 61 362 106 HOH HOH . H 4 HOH B 62 363 108 HOH HOH . H 4 HOH B 63 364 110 HOH HOH . H 4 HOH B 64 365 114 HOH HOH . H 4 HOH B 65 366 115 HOH HOH . H 4 HOH B 66 367 117 HOH HOH . H 4 HOH B 67 368 118 HOH HOH . H 4 HOH B 68 369 119 HOH HOH . H 4 HOH B 69 370 121 HOH HOH . H 4 HOH B 70 371 123 HOH HOH . H 4 HOH B 71 372 126 HOH HOH . H 4 HOH B 72 373 128 HOH HOH . H 4 HOH B 73 374 129 HOH HOH . H 4 HOH B 74 375 132 HOH HOH . H 4 HOH B 75 376 139 HOH HOH . H 4 HOH B 76 377 140 HOH HOH . H 4 HOH B 77 378 142 HOH HOH . H 4 HOH B 78 379 143 HOH HOH . H 4 HOH B 79 380 146 HOH HOH . H 4 HOH B 80 381 149 HOH HOH . H 4 HOH B 81 382 151 HOH HOH . H 4 HOH B 82 383 153 HOH HOH . H 4 HOH B 83 384 154 HOH HOH . H 4 HOH B 84 385 155 HOH HOH . H 4 HOH B 85 386 157 HOH HOH . H 4 HOH B 86 387 158 HOH HOH . H 4 HOH B 87 388 159 HOH HOH . H 4 HOH B 88 389 160 HOH HOH . H 4 HOH B 89 390 163 HOH HOH . H 4 HOH B 90 391 165 HOH HOH . H 4 HOH B 91 392 167 HOH HOH . H 4 HOH B 92 393 168 HOH HOH . H 4 HOH B 93 394 169 HOH HOH . H 4 HOH B 94 395 170 HOH HOH . H 4 HOH B 95 396 171 HOH HOH . H 4 HOH B 96 397 172 HOH HOH . H 4 HOH B 97 398 173 HOH HOH . H 4 HOH B 98 399 174 HOH HOH . H 4 HOH B 99 400 176 HOH HOH . H 4 HOH B 100 401 177 HOH HOH . H 4 HOH B 101 402 180 HOH HOH . H 4 HOH B 102 403 181 HOH HOH . H 4 HOH B 103 404 182 HOH HOH . H 4 HOH B 104 405 184 HOH HOH . H 4 HOH B 105 406 185 HOH HOH . H 4 HOH B 106 407 186 HOH HOH . H 4 HOH B 107 408 187 HOH HOH . H 4 HOH B 108 409 188 HOH HOH . H 4 HOH B 109 410 189 HOH HOH . H 4 HOH B 110 411 191 HOH HOH . H 4 HOH B 111 412 192 HOH HOH . H 4 HOH B 112 413 197 HOH HOH . H 4 HOH B 113 414 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6PG . . . C 2 4.654 2.787 10.388 0.75 31.72 ? C1 6PG 300 A 1 HETATM 2 C C2 6PG . . . C 2 3.96 1.47 10.276 0.75 27.18 ? C2 6PG 300 A 1 HETATM 3 C C3 6PG . . . C 2 4.942 0.29 10.265 0.75 29.74 ? C3 6PG 300 A 1 HETATM 4 C C4 6PG . . . C 2 5.563 0.055 11.665 0.75 30.86 ? C4 6PG 300 A 1 HETATM 5 C C5 6PG . . . C 2 6.43 -1.211 11.756 0.75 30.75 ? C5 6PG 300 A 1 HETATM 6 C C6 6PG . . . C 2 7.229 -1.311 13.054 0.75 33.36 ? C6 6PG 300 A 1 HETATM 7 O O1A 6PG . . . C 2 4.076 3.737 10.936 0.75 31.54 ? O1A 6PG 300 A 1 HETATM 8 O O1 6PG . . . C 2 5.882 2.927 9.906 0.75 29.34 ? O1 6PG 300 A 1 HETATM 9 O O2 6PG . . . C 2 3.191 1.332 11.438 0.75 27.85 ? O2 6PG 300 A 1 HETATM 10 O O3 6PG . . . C 2 5.863 0.536 9.211 0.75 25.66 ? O3 6PG 300 A 1 HETATM 11 O O4 6PG . . . C 2 6.345 1.163 12.111 0.75 32.86 ? O4 6PG 300 A 1 HETATM 12 O O5 6PG . . . C 2 5.596 -2.332 11.585 0.75 26.96 ? O5 6PG 300 A 1 HETATM 13 O O6 6PG . . . C 2 6.407 -1.344 14.223 1 35.56 ? O6 6PG 300 A 1 HETATM 14 P P 6PG . . . C 2 6.651 -0.292 15.297 1 38.02 ? P 6PG 300 A 1 HETATM 15 O O1P 6PG . . . C 2 6.861 1.033 14.637 1 36.23 ? O1P 6PG 300 A 1 HETATM 16 O O2P 6PG . . . C 2 7.885 -0.613 16.092 1 35.54 ? O2P 6PG 300 A 1 HETATM 17 O O3P 6PG . . . C 2 5.497 -0.246 16.248 1 37.05 ? O3P 6PG 300 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #