data_1QY8 # _model_server_result.job_id xZI5VC2sVYhVVU4nt5wW3g _model_server_result.datetime_utc '2024-12-01 03:04:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":338}' # _entry.id 1QY8 # _exptl.entry_id 1QY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.825 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RADICICOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QY8 _cell.length_a 86.749 _cell.length_b 99.367 _cell.length_c 63.298 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H23 Cl O6' _chem_comp.formula_weight 370.825 _chem_comp.id RDI _chem_comp.mon_nstd_flag . _chem_comp.name RADICICOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RDI sing 277 n n C1 O1 RDI sing 278 n n C1 O2 RDI doub 279 n n C2 C3 RDI sing 280 n n C2 C7 RDI sing 281 n n C2 H2 RDI sing 282 n n C3 C4 RDI sing 283 n n C3 O3 RDI doub 284 n n C4 C5 RDI sing 285 n n C4 H41 RDI sing 286 n n C4 H42 RDI sing 287 n n C5 C6 RDI sing 288 n n C5 O4 RDI doub 289 n n C6 C7 RDI sing 290 n n C6 CL1 RDI sing 291 n n C6 H6 RDI sing 292 n n C7 C8 RDI sing 293 n n C7 H7 RDI sing 294 n n C8 C9 RDI sing 295 n n C8 H81 RDI sing 296 n n C8 H82 RDI sing 297 n n C9 C10 RDI sing 298 n n C9 O5 RDI doub 299 n n C10 C11 RDI sing 300 n n C10 H101 RDI sing 301 n n C10 H102 RDI sing 302 n n C11 C12 RDI sing 303 n n C11 H111 RDI sing 304 n n C11 H112 RDI sing 305 n n C12 C13 RDI sing 306 n n C12 H121 RDI sing 307 n n C12 H122 RDI sing 308 n n C13 C14 RDI sing 309 n n C13 H131 RDI sing 310 n n C13 H132 RDI sing 311 n n C14 C15 RDI sing 312 n n C14 O6 RDI sing 313 n n C14 H14 RDI sing 314 n n C15 C16 RDI sing 315 n n C15 O6 RDI sing 316 n n C15 H15 RDI sing 317 n n C16 C17 RDI sing 318 n n C16 H161 RDI sing 319 n n C16 H162 RDI sing 320 n n C17 C18 RDI sing 321 n n C17 O1 RDI sing 322 n n C17 H17 RDI sing 323 n n C18 H181 RDI sing 324 n n C18 H182 RDI sing 325 n n C18 H183 RDI sing 326 n n # _atom_sites.entry_id 1QY8 _atom_sites.fract_transf_matrix[1][1] 0.011528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RDI A 1 338 1 RDI RDC . C 3 HOH A 1 339 1 HOH WAT . C 3 HOH A 2 340 2 HOH WAT . C 3 HOH A 3 341 3 HOH WAT . C 3 HOH A 4 342 4 HOH WAT . C 3 HOH A 5 343 5 HOH WAT . C 3 HOH A 6 344 6 HOH WAT . C 3 HOH A 7 345 7 HOH WAT . C 3 HOH A 8 346 8 HOH WAT . C 3 HOH A 9 347 9 HOH WAT . C 3 HOH A 10 348 10 HOH WAT . C 3 HOH A 11 349 11 HOH WAT . C 3 HOH A 12 350 12 HOH WAT . C 3 HOH A 13 351 13 HOH WAT . C 3 HOH A 14 352 14 HOH WAT . C 3 HOH A 15 353 15 HOH WAT . C 3 HOH A 16 354 16 HOH WAT . C 3 HOH A 17 355 17 HOH WAT . C 3 HOH A 18 356 18 HOH WAT . C 3 HOH A 19 357 19 HOH WAT . C 3 HOH A 20 358 20 HOH WAT . C 3 HOH A 21 359 21 HOH WAT . C 3 HOH A 22 360 22 HOH WAT . C 3 HOH A 23 361 23 HOH WAT . C 3 HOH A 24 362 24 HOH WAT . C 3 HOH A 25 363 25 HOH WAT . C 3 HOH A 26 364 26 HOH WAT . C 3 HOH A 27 365 27 HOH WAT . C 3 HOH A 28 366 28 HOH WAT . C 3 HOH A 29 367 29 HOH WAT . C 3 HOH A 30 368 30 HOH WAT . C 3 HOH A 31 369 31 HOH WAT . C 3 HOH A 32 370 32 HOH WAT . C 3 HOH A 33 371 33 HOH WAT . C 3 HOH A 34 372 34 HOH WAT . C 3 HOH A 35 373 35 HOH WAT . C 3 HOH A 36 374 36 HOH WAT . C 3 HOH A 37 375 37 HOH WAT . C 3 HOH A 38 376 38 HOH WAT . C 3 HOH A 39 377 39 HOH WAT . C 3 HOH A 40 378 40 HOH WAT . C 3 HOH A 41 379 41 HOH WAT . C 3 HOH A 42 380 42 HOH WAT . C 3 HOH A 43 381 43 HOH WAT . C 3 HOH A 44 382 44 HOH WAT . C 3 HOH A 45 383 45 HOH WAT . C 3 HOH A 46 384 46 HOH WAT . C 3 HOH A 47 385 47 HOH WAT . C 3 HOH A 48 386 48 HOH WAT . C 3 HOH A 49 387 49 HOH WAT . C 3 HOH A 50 388 50 HOH WAT . C 3 HOH A 51 389 51 HOH WAT . C 3 HOH A 52 390 52 HOH WAT . C 3 HOH A 53 391 53 HOH WAT . C 3 HOH A 54 392 54 HOH WAT . C 3 HOH A 55 393 55 HOH WAT . C 3 HOH A 56 394 56 HOH WAT . C 3 HOH A 57 395 57 HOH WAT . C 3 HOH A 58 396 58 HOH WAT . C 3 HOH A 59 397 59 HOH WAT . C 3 HOH A 60 398 60 HOH WAT . C 3 HOH A 61 399 61 HOH WAT . C 3 HOH A 62 400 62 HOH WAT . C 3 HOH A 63 401 63 HOH WAT . C 3 HOH A 64 402 64 HOH WAT . C 3 HOH A 65 403 65 HOH WAT . C 3 HOH A 66 404 66 HOH WAT . C 3 HOH A 67 405 67 HOH WAT . C 3 HOH A 68 406 68 HOH WAT . C 3 HOH A 69 407 69 HOH WAT . C 3 HOH A 70 408 70 HOH WAT . C 3 HOH A 71 409 71 HOH WAT . C 3 HOH A 72 410 72 HOH WAT . C 3 HOH A 73 411 73 HOH WAT . C 3 HOH A 74 412 74 HOH WAT . C 3 HOH A 75 413 75 HOH WAT . C 3 HOH A 76 414 76 HOH WAT . C 3 HOH A 77 415 77 HOH WAT . C 3 HOH A 78 416 78 HOH WAT . C 3 HOH A 79 417 79 HOH WAT . C 3 HOH A 80 418 80 HOH WAT . C 3 HOH A 81 419 81 HOH WAT . C 3 HOH A 82 420 82 HOH WAT . C 3 HOH A 83 421 83 HOH WAT . C 3 HOH A 84 422 84 HOH WAT . C 3 HOH A 85 423 85 HOH WAT . C 3 HOH A 86 424 86 HOH WAT . C 3 HOH A 87 425 87 HOH WAT . C 3 HOH A 88 426 88 HOH WAT . C 3 HOH A 89 427 89 HOH WAT . C 3 HOH A 90 428 90 HOH WAT . C 3 HOH A 91 429 91 HOH WAT . C 3 HOH A 92 430 92 HOH WAT . C 3 HOH A 93 431 93 HOH WAT . C 3 HOH A 94 432 94 HOH WAT . C 3 HOH A 95 433 95 HOH WAT . C 3 HOH A 96 434 96 HOH WAT . C 3 HOH A 97 435 97 HOH WAT . C 3 HOH A 98 436 98 HOH WAT . C 3 HOH A 99 437 99 HOH WAT . C 3 HOH A 100 438 100 HOH WAT . C 3 HOH A 101 439 101 HOH WAT . C 3 HOH A 102 440 102 HOH WAT . C 3 HOH A 103 441 103 HOH WAT . C 3 HOH A 104 442 104 HOH WAT . C 3 HOH A 105 443 105 HOH WAT . C 3 HOH A 106 444 106 HOH WAT . C 3 HOH A 107 445 107 HOH WAT . C 3 HOH A 108 446 108 HOH WAT . C 3 HOH A 109 447 109 HOH WAT . C 3 HOH A 110 448 110 HOH WAT . C 3 HOH A 111 449 111 HOH WAT . C 3 HOH A 112 450 112 HOH WAT . C 3 HOH A 113 451 113 HOH WAT . C 3 HOH A 114 452 114 HOH WAT . C 3 HOH A 115 453 115 HOH WAT . C 3 HOH A 116 454 116 HOH WAT . C 3 HOH A 117 455 117 HOH WAT . C 3 HOH A 118 456 118 HOH WAT . C 3 HOH A 119 457 119 HOH WAT . C 3 HOH A 120 458 120 HOH WAT . C 3 HOH A 121 459 121 HOH WAT . C 3 HOH A 122 460 122 HOH WAT . C 3 HOH A 123 461 123 HOH WAT . C 3 HOH A 124 462 124 HOH WAT . C 3 HOH A 125 463 125 HOH WAT . C 3 HOH A 126 464 126 HOH WAT . C 3 HOH A 127 465 127 HOH WAT . C 3 HOH A 128 466 128 HOH WAT . C 3 HOH A 129 467 129 HOH WAT . C 3 HOH A 130 468 130 HOH WAT . C 3 HOH A 131 469 131 HOH WAT . C 3 HOH A 132 470 132 HOH WAT . C 3 HOH A 133 471 133 HOH WAT . C 3 HOH A 134 472 134 HOH WAT . C 3 HOH A 135 473 135 HOH WAT . C 3 HOH A 136 474 136 HOH WAT . C 3 HOH A 137 475 137 HOH WAT . C 3 HOH A 138 476 138 HOH WAT . C 3 HOH A 139 477 139 HOH WAT . C 3 HOH A 140 478 140 HOH WAT . C 3 HOH A 141 479 141 HOH WAT . C 3 HOH A 142 480 142 HOH WAT . C 3 HOH A 143 481 143 HOH WAT . C 3 HOH A 144 482 144 HOH WAT . C 3 HOH A 145 483 145 HOH WAT . C 3 HOH A 146 484 146 HOH WAT . C 3 HOH A 147 485 147 HOH WAT . C 3 HOH A 148 486 148 HOH WAT . C 3 HOH A 149 487 149 HOH WAT . C 3 HOH A 150 488 150 HOH WAT . C 3 HOH A 151 489 151 HOH WAT . C 3 HOH A 152 490 152 HOH WAT . C 3 HOH A 153 491 153 HOH WAT . C 3 HOH A 154 492 154 HOH WAT . C 3 HOH A 155 493 155 HOH WAT . C 3 HOH A 156 494 156 HOH WAT . C 3 HOH A 157 495 157 HOH WAT . C 3 HOH A 158 496 158 HOH WAT . C 3 HOH A 159 497 159 HOH WAT . C 3 HOH A 160 498 160 HOH WAT . C 3 HOH A 161 499 161 HOH WAT . C 3 HOH A 162 500 162 HOH WAT . C 3 HOH A 163 501 163 HOH WAT . C 3 HOH A 164 502 164 HOH WAT . C 3 HOH A 165 503 165 HOH WAT . C 3 HOH A 166 504 166 HOH WAT . C 3 HOH A 167 505 167 HOH WAT . C 3 HOH A 168 506 168 HOH WAT . C 3 HOH A 169 507 169 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RDI . . . B 2 19.31 -20.95 54.733 1 33.26 ? C1 RDI 338 A 1 HETATM 2 C C2 RDI . . . B 2 18.065 -20.532 55.421 1 29.23 ? C2 RDI 338 A 1 HETATM 3 C C3 RDI . . . B 2 17.142 -21.603 55.822 1 29.5 ? C3 RDI 338 A 1 HETATM 4 C C4 RDI . . . B 2 15.886 -21.324 56.455 1 29.03 ? C4 RDI 338 A 1 HETATM 5 C C5 RDI . . . B 2 15.532 -19.975 56.725 1 29.97 ? C5 RDI 338 A 1 HETATM 6 C C6 RDI . . . B 2 16.439 -18.892 56.375 1 28.28 ? C6 RDI 338 A 1 HETATM 7 C C7 RDI . . . B 2 17.704 -19.144 55.719 1 29 ? C7 RDI 338 A 1 HETATM 8 C C8 RDI . . . B 2 18.637 -17.951 55.347 1 31.07 ? C8 RDI 338 A 1 HETATM 9 C C9 RDI . . . B 2 18.075 -16.753 54.506 1 33.15 ? C9 RDI 338 A 1 HETATM 10 C C10 RDI . . . B 2 17.199 -16.974 53.334 1 35.32 ? C10 RDI 338 A 1 HETATM 11 C C11 RDI . . . B 2 17.327 -18.001 52.517 1 37.89 ? C11 RDI 338 A 1 HETATM 12 C C12 RDI . . . B 2 16.509 -18.292 51.372 1 40.79 ? C12 RDI 338 A 1 HETATM 13 C C13 RDI . . . B 2 16.689 -19.341 50.564 1 44.13 ? C13 RDI 338 A 1 HETATM 14 C C14 RDI . . . B 2 17.676 -20.533 50.464 1 43.12 ? C14 RDI 338 A 1 HETATM 15 C C15 RDI . . . B 2 19.128 -20.489 50.415 1 44.3 ? C15 RDI 338 A 1 HETATM 16 C C16 RDI . . . B 2 19.983 -21.268 51.416 1 40.74 ? C16 RDI 338 A 1 HETATM 17 C C17 RDI . . . B 2 20.561 -20.642 52.656 1 39.07 ? C17 RDI 338 A 1 HETATM 18 C C18 RDI . . . B 2 21.362 -19.361 52.55 1 37.41 ? C18 RDI 338 A 1 HETATM 19 O O1 RDI . . . B 2 19.447 -20.378 53.552 1 36.49 ? O1 RDI 338 A 1 HETATM 20 O O2 RDI . . . B 2 20.105 -21.756 55.195 1 28.83 ? O2 RDI 338 A 1 HETATM 21 O O3 RDI . . . B 2 17.422 -22.909 55.611 1 27.93 ? O3 RDI 338 A 1 HETATM 22 O O4 RDI . . . B 2 14.329 -19.648 57.317 1 28.17 ? O4 RDI 338 A 1 HETATM 23 CL CL1 RDI . . . B 2 15.961 -17.302 56.784 1 30.9 ? CL1 RDI 338 A 1 HETATM 24 O O5 RDI . . . B 2 18.294 -15.636 54.859 1 33.67 ? O5 RDI 338 A 1 HETATM 25 O O6 RDI . . . B 2 18.35 -21.018 49.367 1 48.54 ? O6 RDI 338 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #