data_1QYV # _model_server_result.job_id tTBWKpSf0WULtEjrcRLEXw _model_server_result.datetime_utc '2025-03-04 22:01:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":361}' # _entry.id 1QYV # _exptl.entry_id 1QYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.36 _cell.angle_gamma 90 _cell.entry_id 1QYV _cell.length_a 122.399 _cell.length_b 43.916 _cell.length_c 60.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 250 n n PA O2A NAP sing 251 n n PA O5B NAP sing 252 n n PA O3 NAP sing 253 n n O2A HOA2 NAP sing 254 n n O5B C5B NAP sing 255 n n C5B C4B NAP sing 256 n n C5B H51A NAP sing 257 n n C5B H52A NAP sing 258 n n C4B O4B NAP sing 259 n n C4B C3B NAP sing 260 n n C4B H4B NAP sing 261 n n O4B C1B NAP sing 262 n n C3B O3B NAP sing 263 n n C3B C2B NAP sing 264 n n C3B H3B NAP sing 265 n n O3B HO3A NAP sing 266 n n C2B O2B NAP sing 267 n n C2B C1B NAP sing 268 n n C2B H2B NAP sing 269 n n O2B P2B NAP sing 270 n n C1B N9A NAP sing 271 n n C1B H1B NAP sing 272 n n N9A C8A NAP sing 273 n y N9A C4A NAP sing 274 n y C8A N7A NAP doub 275 n y C8A H8A NAP sing 276 n n N7A C5A NAP sing 277 n y C5A C6A NAP sing 278 n y C5A C4A NAP doub 279 n y C6A N6A NAP sing 280 n n C6A N1A NAP doub 281 n y N6A H61A NAP sing 282 n n N6A H62A NAP sing 283 n n N1A C2A NAP sing 284 n y C2A N3A NAP doub 285 n y C2A H2A NAP sing 286 n n N3A C4A NAP sing 287 n y O3 PN NAP sing 288 n n PN O1N NAP doub 289 n n PN O2N NAP sing 290 n n PN O5D NAP sing 291 n n O5D C5D NAP sing 292 n n C5D C4D NAP sing 293 n n C5D H51N NAP sing 294 n n C5D H52N NAP sing 295 n n C4D O4D NAP sing 296 n n C4D C3D NAP sing 297 n n C4D H4D NAP sing 298 n n O4D C1D NAP sing 299 n n C3D O3D NAP sing 300 n n C3D C2D NAP sing 301 n n C3D H3D NAP sing 302 n n O3D HO3N NAP sing 303 n n C2D O2D NAP sing 304 n n C2D C1D NAP sing 305 n n C2D H2D NAP sing 306 n n O2D HO2N NAP sing 307 n n C1D N1N NAP sing 308 n n C1D H1D NAP sing 309 n n N1N C2N NAP sing 310 n y N1N C6N NAP doub 311 n y C2N C3N NAP doub 312 n y C2N H2N NAP sing 313 n n C3N C7N NAP sing 314 n n C3N C4N NAP sing 315 n y C7N O7N NAP doub 316 n n C7N N7N NAP sing 317 n n N7N H71N NAP sing 318 n n N7N H72N NAP sing 319 n n C4N C5N NAP doub 320 n y C4N H4N NAP sing 321 n n C5N C6N NAP sing 322 n y C5N H5N NAP sing 323 n n C6N H6N NAP sing 324 n n P2B O1X NAP doub 325 n n P2B O2X NAP sing 326 n n P2B O3X NAP sing 327 n n O2X HOP2 NAP sing 328 n n O3X HOP3 NAP sing 329 n n # _atom_sites.entry_id 1QYV _atom_sites.fract_transf_matrix[1][1] 0.00817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001346 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 361 361 NAP NAP . C 3 GOL A 1 600 600 GOL GOL . D 4 HOH A 1 601 1 HOH WAT . D 4 HOH A 2 602 2 HOH WAT . D 4 HOH A 3 603 3 HOH WAT . D 4 HOH A 4 604 4 HOH WAT . D 4 HOH A 5 605 5 HOH WAT . D 4 HOH A 6 606 6 HOH WAT . D 4 HOH A 7 607 7 HOH WAT . D 4 HOH A 8 608 8 HOH WAT . D 4 HOH A 9 609 9 HOH WAT . D 4 HOH A 10 610 10 HOH WAT . D 4 HOH A 11 611 11 HOH WAT . D 4 HOH A 12 612 12 HOH WAT . D 4 HOH A 13 613 13 HOH WAT . D 4 HOH A 14 614 14 HOH WAT . D 4 HOH A 15 615 15 HOH WAT . D 4 HOH A 16 616 16 HOH WAT . D 4 HOH A 17 617 17 HOH WAT . D 4 HOH A 18 618 18 HOH WAT . D 4 HOH A 19 619 19 HOH WAT . D 4 HOH A 20 620 20 HOH WAT . D 4 HOH A 21 621 21 HOH WAT . D 4 HOH A 22 622 22 HOH WAT . D 4 HOH A 23 623 23 HOH WAT . D 4 HOH A 24 624 24 HOH WAT . D 4 HOH A 25 625 25 HOH WAT . D 4 HOH A 26 626 26 HOH WAT . D 4 HOH A 27 627 27 HOH WAT . D 4 HOH A 28 628 28 HOH WAT . D 4 HOH A 29 629 29 HOH WAT . D 4 HOH A 30 630 30 HOH WAT . D 4 HOH A 31 631 31 HOH WAT . D 4 HOH A 32 632 32 HOH WAT . D 4 HOH A 33 633 33 HOH WAT . D 4 HOH A 34 634 34 HOH WAT . D 4 HOH A 35 635 35 HOH WAT . D 4 HOH A 36 636 36 HOH WAT . D 4 HOH A 37 637 37 HOH WAT . D 4 HOH A 38 638 38 HOH WAT . D 4 HOH A 39 639 39 HOH WAT . D 4 HOH A 40 640 40 HOH WAT . D 4 HOH A 41 641 41 HOH WAT . D 4 HOH A 42 642 42 HOH WAT . D 4 HOH A 43 643 43 HOH WAT . D 4 HOH A 44 644 44 HOH WAT . D 4 HOH A 45 645 45 HOH WAT . D 4 HOH A 46 646 46 HOH WAT . D 4 HOH A 47 647 47 HOH WAT . D 4 HOH A 48 648 48 HOH WAT . D 4 HOH A 49 649 49 HOH WAT . D 4 HOH A 50 650 50 HOH WAT . D 4 HOH A 51 651 51 HOH WAT . D 4 HOH A 52 652 52 HOH WAT . D 4 HOH A 53 653 53 HOH WAT . D 4 HOH A 54 654 54 HOH WAT . D 4 HOH A 55 655 55 HOH WAT . D 4 HOH A 56 656 56 HOH WAT . D 4 HOH A 57 657 57 HOH WAT . D 4 HOH A 58 658 58 HOH WAT . D 4 HOH A 59 659 59 HOH WAT . D 4 HOH A 60 660 60 HOH WAT . D 4 HOH A 61 661 61 HOH WAT . D 4 HOH A 62 662 62 HOH WAT . D 4 HOH A 63 663 63 HOH WAT . D 4 HOH A 64 664 64 HOH WAT . D 4 HOH A 65 665 65 HOH WAT . D 4 HOH A 66 666 66 HOH WAT . D 4 HOH A 67 667 67 HOH WAT . D 4 HOH A 68 668 68 HOH WAT . D 4 HOH A 69 669 69 HOH WAT . D 4 HOH A 70 670 70 HOH WAT . D 4 HOH A 71 671 71 HOH WAT . D 4 HOH A 72 672 72 HOH WAT . D 4 HOH A 73 673 73 HOH WAT . D 4 HOH A 74 674 74 HOH WAT . D 4 HOH A 75 675 75 HOH WAT . D 4 HOH A 76 676 76 HOH WAT . D 4 HOH A 77 677 77 HOH WAT . D 4 HOH A 78 678 78 HOH WAT . D 4 HOH A 79 679 79 HOH WAT . D 4 HOH A 80 680 80 HOH WAT . D 4 HOH A 81 681 81 HOH WAT . D 4 HOH A 82 682 82 HOH WAT . D 4 HOH A 83 683 83 HOH WAT . D 4 HOH A 84 684 84 HOH WAT . D 4 HOH A 85 685 85 HOH WAT . D 4 HOH A 86 686 86 HOH WAT . D 4 HOH A 87 687 87 HOH WAT . D 4 HOH A 88 688 88 HOH WAT . D 4 HOH A 89 689 89 HOH WAT . D 4 HOH A 90 690 90 HOH WAT . D 4 HOH A 91 691 91 HOH WAT . D 4 HOH A 92 692 92 HOH WAT . D 4 HOH A 93 693 93 HOH WAT . D 4 HOH A 94 694 94 HOH WAT . D 4 HOH A 95 695 95 HOH WAT . D 4 HOH A 96 696 96 HOH WAT . D 4 HOH A 97 697 97 HOH WAT . D 4 HOH A 98 698 98 HOH WAT . D 4 HOH A 99 699 99 HOH WAT . D 4 HOH A 100 700 100 HOH WAT . D 4 HOH A 101 701 101 HOH WAT . D 4 HOH A 102 702 102 HOH WAT . D 4 HOH A 103 703 103 HOH WAT . D 4 HOH A 104 704 104 HOH WAT . D 4 HOH A 105 705 105 HOH WAT . D 4 HOH A 106 706 106 HOH WAT . D 4 HOH A 107 707 107 HOH WAT . D 4 HOH A 108 708 108 HOH WAT . D 4 HOH A 109 709 109 HOH WAT . D 4 HOH A 110 710 110 HOH WAT . D 4 HOH A 111 711 111 HOH WAT . D 4 HOH A 112 712 112 HOH WAT . D 4 HOH A 113 713 113 HOH WAT . D 4 HOH A 114 714 114 HOH WAT . D 4 HOH A 115 715 115 HOH WAT . D 4 HOH A 116 716 116 HOH WAT . D 4 HOH A 117 717 117 HOH WAT . D 4 HOH A 118 718 118 HOH WAT . D 4 HOH A 119 719 119 HOH WAT . D 4 HOH A 120 720 120 HOH WAT . D 4 HOH A 121 721 121 HOH WAT . D 4 HOH A 122 722 122 HOH WAT . D 4 HOH A 123 723 123 HOH WAT . D 4 HOH A 124 724 124 HOH WAT . D 4 HOH A 125 725 125 HOH WAT . D 4 HOH A 126 726 126 HOH WAT . D 4 HOH A 127 727 127 HOH WAT . D 4 HOH A 128 728 128 HOH WAT . D 4 HOH A 129 729 129 HOH WAT . D 4 HOH A 130 730 130 HOH WAT . D 4 HOH A 131 731 131 HOH WAT . D 4 HOH A 132 732 132 HOH WAT . D 4 HOH A 133 733 133 HOH WAT . D 4 HOH A 134 734 134 HOH WAT . D 4 HOH A 135 735 135 HOH WAT . D 4 HOH A 136 736 136 HOH WAT . D 4 HOH A 137 737 137 HOH WAT . D 4 HOH A 138 738 138 HOH WAT . D 4 HOH A 139 739 139 HOH WAT . D 4 HOH A 140 740 140 HOH WAT . D 4 HOH A 141 741 141 HOH WAT . D 4 HOH A 142 742 142 HOH WAT . D 4 HOH A 143 743 143 HOH WAT . D 4 HOH A 144 744 144 HOH WAT . D 4 HOH A 145 745 145 HOH WAT . D 4 HOH A 146 746 146 HOH WAT . D 4 HOH A 147 747 147 HOH WAT . D 4 HOH A 148 748 148 HOH WAT . D 4 HOH A 149 749 149 HOH WAT . D 4 HOH A 150 750 150 HOH WAT . D 4 HOH A 151 751 151 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 18.017 -2.286 -5.584 1 54.74 ? PA NAP 361 A 1 HETATM 2 O O1A NAP . . . B 2 16.791 -2.805 -6.2 1 55.25 ? O1A NAP 361 A 1 HETATM 3 O O2A NAP . . . B 2 19.381 -2.637 -6.096 1 51.8 ? O2A NAP 361 A 1 HETATM 4 O O5B NAP . . . B 2 17.854 -2.59 -4.02 1 50.71 ? O5B NAP 361 A 1 HETATM 5 C C5B NAP . . . B 2 16.883 -3.42 -3.529 1 43.16 ? C5B NAP 361 A 1 HETATM 6 C C4B NAP . . . B 2 17.535 -4.474 -2.645 1 36.94 ? C4B NAP 361 A 1 HETATM 7 O O4B NAP . . . B 2 16.411 -5.121 -2.119 1 36.2 ? O4B NAP 361 A 1 HETATM 8 C C3B NAP . . . B 2 18.352 -5.529 -3.422 1 37.02 ? C3B NAP 361 A 1 HETATM 9 O O3B NAP . . . B 2 19.501 -5.927 -2.639 1 37.14 ? O3B NAP 361 A 1 HETATM 10 C C2B NAP . . . B 2 17.381 -6.698 -3.422 1 38.19 ? C2B NAP 361 A 1 HETATM 11 O O2B NAP . . . B 2 18.108 -7.919 -3.503 1 41.67 ? O2B NAP 361 A 1 HETATM 12 C C1B NAP . . . B 2 16.653 -6.522 -2.084 1 36.26 ? C1B NAP 361 A 1 HETATM 13 N N9A NAP . . . B 2 15.532 -7.415 -1.962 1 33.12 ? N9A NAP 361 A 1 HETATM 14 C C8A NAP . . . B 2 14.573 -7.778 -2.87 1 33.34 ? C8A NAP 361 A 1 HETATM 15 N N7A NAP . . . B 2 13.703 -8.709 -2.336 1 30.9 ? N7A NAP 361 A 1 HETATM 16 C C5A NAP . . . B 2 14.169 -8.897 -1.079 1 31.67 ? C5A NAP 361 A 1 HETATM 17 C C6A NAP . . . B 2 13.695 -9.736 -0.095 1 32.61 ? C6A NAP 361 A 1 HETATM 18 N N6A NAP . . . B 2 12.624 -10.538 -0.281 1 32.54 ? N6A NAP 361 A 1 HETATM 19 N N1A NAP . . . B 2 14.372 -9.774 1.142 1 32.35 ? N1A NAP 361 A 1 HETATM 20 C C2A NAP . . . B 2 15.452 -9 1.35 1 34.14 ? C2A NAP 361 A 1 HETATM 21 N N3A NAP . . . B 2 15.941 -8.202 0.374 1 33.45 ? N3A NAP 361 A 1 HETATM 22 C C4A NAP . . . B 2 15.298 -8.109 -0.855 1 31.58 ? C4A NAP 361 A 1 HETATM 23 O O3 NAP . . . B 2 17.811 -0.696 -5.648 1 48.55 ? O3 NAP 361 A 1 HETATM 24 P PN NAP . . . B 2 18.369 0.528 -4.85 1 48.63 ? PN NAP 361 A 1 HETATM 25 O O1N NAP . . . B 2 17.829 1.758 -5.374 1 54.79 ? O1N NAP 361 A 1 HETATM 26 O O2N NAP . . . B 2 19.055 0.598 -3.574 1 46.14 ? O2N NAP 361 A 1 HETATM 27 O O5D NAP . . . B 2 17.065 -0.034 -4.049 1 51.73 ? O5D NAP 361 A 1 HETATM 28 C C5D NAP . . . B 2 16.991 -0.003 -2.686 1 45.86 ? C5D NAP 361 A 1 HETATM 29 C C4D NAP . . . B 2 15.782 0.715 -2.159 1 49.58 ? C4D NAP 361 A 1 HETATM 30 O O4D NAP . . . B 2 15.83 2.004 -2.784 1 50.52 ? O4D NAP 361 A 1 HETATM 31 C C3D NAP . . . B 2 14.385 0.125 -2.623 1 47.75 ? C3D NAP 361 A 1 HETATM 32 O O3D NAP . . . B 2 13.462 0.034 -1.498 1 47.87 ? O3D NAP 361 A 1 HETATM 33 C C2D NAP . . . B 2 13.964 1.107 -3.744 1 49.96 ? C2D NAP 361 A 1 HETATM 34 O O2D NAP . . . B 2 12.529 1.175 -3.91 1 51.88 ? O2D NAP 361 A 1 HETATM 35 C C1D NAP . . . B 2 14.529 2.399 -3.238 1 48.36 ? C1D NAP 361 A 1 HETATM 36 N N1N NAP . . . B 2 14.478 3.502 -4.226 1 49.51 ? N1N NAP 361 A 1 HETATM 37 C C2N NAP . . . B 2 15.258 3.319 -5.381 1 47.01 ? C2N NAP 361 A 1 HETATM 38 C C3N NAP . . . B 2 15.267 4.288 -6.387 1 45.25 ? C3N NAP 361 A 1 HETATM 39 C C7N NAP . . . B 2 16.132 4.121 -7.63 1 45.85 ? C7N NAP 361 A 1 HETATM 40 O O7N NAP . . . B 2 15.967 4.797 -8.651 1 38.59 ? O7N NAP 361 A 1 HETATM 41 N N7N NAP . . . B 2 17.058 3.152 -7.5 1 42.38 ? N7N NAP 361 A 1 HETATM 42 C C4N NAP . . . B 2 14.464 5.457 -6.213 1 47.51 ? C4N NAP 361 A 1 HETATM 43 C C5N NAP . . . B 2 13.656 5.671 -5.055 1 49.01 ? C5N NAP 361 A 1 HETATM 44 C C6N NAP . . . B 2 13.666 4.691 -4.052 1 45.25 ? C6N NAP 361 A 1 HETATM 45 P P2B NAP . . . B 2 17.786 -9.126 -4.534 1 51.29 ? P2B NAP 361 A 1 HETATM 46 O O1X NAP . . . B 2 17.505 -8.483 -5.897 1 48.6 ? O1X NAP 361 A 1 HETATM 47 O O2X NAP . . . B 2 18.889 -10.124 -4.375 1 48.92 ? O2X NAP 361 A 1 HETATM 48 O O3X NAP . . . B 2 16.436 -9.672 -3.957 1 50.18 ? O3X NAP 361 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #