data_1QYV # _model_server_result.job_id gzuCGx0QJNVs6K4Qq1oh6w _model_server_result.datetime_utc '2025-03-04 22:15:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 1QYV # _exptl.entry_id 1QYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.36 _cell.angle_gamma 90 _cell.entry_id 1QYV _cell.length_a 122.399 _cell.length_b 43.916 _cell.length_c 60.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1QYV _atom_sites.fract_transf_matrix[1][1] 0.00817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001346 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 361 361 NAP NAP . C 3 GOL A 1 600 600 GOL GOL . D 4 HOH A 1 601 1 HOH WAT . D 4 HOH A 2 602 2 HOH WAT . D 4 HOH A 3 603 3 HOH WAT . D 4 HOH A 4 604 4 HOH WAT . D 4 HOH A 5 605 5 HOH WAT . D 4 HOH A 6 606 6 HOH WAT . D 4 HOH A 7 607 7 HOH WAT . D 4 HOH A 8 608 8 HOH WAT . D 4 HOH A 9 609 9 HOH WAT . D 4 HOH A 10 610 10 HOH WAT . D 4 HOH A 11 611 11 HOH WAT . D 4 HOH A 12 612 12 HOH WAT . D 4 HOH A 13 613 13 HOH WAT . D 4 HOH A 14 614 14 HOH WAT . D 4 HOH A 15 615 15 HOH WAT . D 4 HOH A 16 616 16 HOH WAT . D 4 HOH A 17 617 17 HOH WAT . D 4 HOH A 18 618 18 HOH WAT . D 4 HOH A 19 619 19 HOH WAT . D 4 HOH A 20 620 20 HOH WAT . D 4 HOH A 21 621 21 HOH WAT . D 4 HOH A 22 622 22 HOH WAT . D 4 HOH A 23 623 23 HOH WAT . D 4 HOH A 24 624 24 HOH WAT . D 4 HOH A 25 625 25 HOH WAT . D 4 HOH A 26 626 26 HOH WAT . D 4 HOH A 27 627 27 HOH WAT . D 4 HOH A 28 628 28 HOH WAT . D 4 HOH A 29 629 29 HOH WAT . D 4 HOH A 30 630 30 HOH WAT . D 4 HOH A 31 631 31 HOH WAT . D 4 HOH A 32 632 32 HOH WAT . D 4 HOH A 33 633 33 HOH WAT . D 4 HOH A 34 634 34 HOH WAT . D 4 HOH A 35 635 35 HOH WAT . D 4 HOH A 36 636 36 HOH WAT . D 4 HOH A 37 637 37 HOH WAT . D 4 HOH A 38 638 38 HOH WAT . D 4 HOH A 39 639 39 HOH WAT . D 4 HOH A 40 640 40 HOH WAT . D 4 HOH A 41 641 41 HOH WAT . D 4 HOH A 42 642 42 HOH WAT . D 4 HOH A 43 643 43 HOH WAT . D 4 HOH A 44 644 44 HOH WAT . D 4 HOH A 45 645 45 HOH WAT . D 4 HOH A 46 646 46 HOH WAT . D 4 HOH A 47 647 47 HOH WAT . D 4 HOH A 48 648 48 HOH WAT . D 4 HOH A 49 649 49 HOH WAT . D 4 HOH A 50 650 50 HOH WAT . D 4 HOH A 51 651 51 HOH WAT . D 4 HOH A 52 652 52 HOH WAT . D 4 HOH A 53 653 53 HOH WAT . D 4 HOH A 54 654 54 HOH WAT . D 4 HOH A 55 655 55 HOH WAT . D 4 HOH A 56 656 56 HOH WAT . D 4 HOH A 57 657 57 HOH WAT . D 4 HOH A 58 658 58 HOH WAT . D 4 HOH A 59 659 59 HOH WAT . D 4 HOH A 60 660 60 HOH WAT . D 4 HOH A 61 661 61 HOH WAT . D 4 HOH A 62 662 62 HOH WAT . D 4 HOH A 63 663 63 HOH WAT . D 4 HOH A 64 664 64 HOH WAT . D 4 HOH A 65 665 65 HOH WAT . D 4 HOH A 66 666 66 HOH WAT . D 4 HOH A 67 667 67 HOH WAT . D 4 HOH A 68 668 68 HOH WAT . D 4 HOH A 69 669 69 HOH WAT . D 4 HOH A 70 670 70 HOH WAT . D 4 HOH A 71 671 71 HOH WAT . D 4 HOH A 72 672 72 HOH WAT . D 4 HOH A 73 673 73 HOH WAT . D 4 HOH A 74 674 74 HOH WAT . D 4 HOH A 75 675 75 HOH WAT . D 4 HOH A 76 676 76 HOH WAT . D 4 HOH A 77 677 77 HOH WAT . D 4 HOH A 78 678 78 HOH WAT . D 4 HOH A 79 679 79 HOH WAT . D 4 HOH A 80 680 80 HOH WAT . D 4 HOH A 81 681 81 HOH WAT . D 4 HOH A 82 682 82 HOH WAT . D 4 HOH A 83 683 83 HOH WAT . D 4 HOH A 84 684 84 HOH WAT . D 4 HOH A 85 685 85 HOH WAT . D 4 HOH A 86 686 86 HOH WAT . D 4 HOH A 87 687 87 HOH WAT . D 4 HOH A 88 688 88 HOH WAT . D 4 HOH A 89 689 89 HOH WAT . D 4 HOH A 90 690 90 HOH WAT . D 4 HOH A 91 691 91 HOH WAT . D 4 HOH A 92 692 92 HOH WAT . D 4 HOH A 93 693 93 HOH WAT . D 4 HOH A 94 694 94 HOH WAT . D 4 HOH A 95 695 95 HOH WAT . D 4 HOH A 96 696 96 HOH WAT . D 4 HOH A 97 697 97 HOH WAT . D 4 HOH A 98 698 98 HOH WAT . D 4 HOH A 99 699 99 HOH WAT . D 4 HOH A 100 700 100 HOH WAT . D 4 HOH A 101 701 101 HOH WAT . D 4 HOH A 102 702 102 HOH WAT . D 4 HOH A 103 703 103 HOH WAT . D 4 HOH A 104 704 104 HOH WAT . D 4 HOH A 105 705 105 HOH WAT . D 4 HOH A 106 706 106 HOH WAT . D 4 HOH A 107 707 107 HOH WAT . D 4 HOH A 108 708 108 HOH WAT . D 4 HOH A 109 709 109 HOH WAT . D 4 HOH A 110 710 110 HOH WAT . D 4 HOH A 111 711 111 HOH WAT . D 4 HOH A 112 712 112 HOH WAT . D 4 HOH A 113 713 113 HOH WAT . D 4 HOH A 114 714 114 HOH WAT . D 4 HOH A 115 715 115 HOH WAT . D 4 HOH A 116 716 116 HOH WAT . D 4 HOH A 117 717 117 HOH WAT . D 4 HOH A 118 718 118 HOH WAT . D 4 HOH A 119 719 119 HOH WAT . D 4 HOH A 120 720 120 HOH WAT . D 4 HOH A 121 721 121 HOH WAT . D 4 HOH A 122 722 122 HOH WAT . D 4 HOH A 123 723 123 HOH WAT . D 4 HOH A 124 724 124 HOH WAT . D 4 HOH A 125 725 125 HOH WAT . D 4 HOH A 126 726 126 HOH WAT . D 4 HOH A 127 727 127 HOH WAT . D 4 HOH A 128 728 128 HOH WAT . D 4 HOH A 129 729 129 HOH WAT . D 4 HOH A 130 730 130 HOH WAT . D 4 HOH A 131 731 131 HOH WAT . D 4 HOH A 132 732 132 HOH WAT . D 4 HOH A 133 733 133 HOH WAT . D 4 HOH A 134 734 134 HOH WAT . D 4 HOH A 135 735 135 HOH WAT . D 4 HOH A 136 736 136 HOH WAT . D 4 HOH A 137 737 137 HOH WAT . D 4 HOH A 138 738 138 HOH WAT . D 4 HOH A 139 739 139 HOH WAT . D 4 HOH A 140 740 140 HOH WAT . D 4 HOH A 141 741 141 HOH WAT . D 4 HOH A 142 742 142 HOH WAT . D 4 HOH A 143 743 143 HOH WAT . D 4 HOH A 144 744 144 HOH WAT . D 4 HOH A 145 745 145 HOH WAT . D 4 HOH A 146 746 146 HOH WAT . D 4 HOH A 147 747 147 HOH WAT . D 4 HOH A 148 748 148 HOH WAT . D 4 HOH A 149 749 149 HOH WAT . D 4 HOH A 150 750 150 HOH WAT . D 4 HOH A 151 751 151 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -3.68 15.709 -2.743 1 48 ? C1 GOL 600 A 1 HETATM 2 O O1 GOL . . . C 3 -3.462 15.628 -4.353 1 46.19 ? O1 GOL 600 A 1 HETATM 3 C C2 GOL . . . C 3 -4.64 14.944 -2.06 1 49.5 ? C2 GOL 600 A 1 HETATM 4 O O2 GOL . . . C 3 -5.859 15.13 -2.56 1 51.33 ? O2 GOL 600 A 1 HETATM 5 C C3 GOL . . . C 3 -4.084 14.449 -1.083 1 49.24 ? C3 GOL 600 A 1 HETATM 6 O O3 GOL . . . C 3 -2.98 13.313 -0.956 1 45.86 ? O3 GOL 600 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #