data_1QYW # _model_server_result.job_id LVgw1PYd6UronNs9bRSuSQ _model_server_result.datetime_utc '2025-03-04 21:58:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":361}' # _entry.id 1QYW # _exptl.entry_id 1QYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.76 _cell.angle_gamma 90 _cell.entry_id 1QYW _cell.length_a 122.646 _cell.length_b 43.926 _cell.length_c 60.793 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 302 n n PA O2A NAP sing 303 n n PA O5B NAP sing 304 n n PA O3 NAP sing 305 n n O2A HOA2 NAP sing 306 n n O5B C5B NAP sing 307 n n C5B C4B NAP sing 308 n n C5B H51A NAP sing 309 n n C5B H52A NAP sing 310 n n C4B O4B NAP sing 311 n n C4B C3B NAP sing 312 n n C4B H4B NAP sing 313 n n O4B C1B NAP sing 314 n n C3B O3B NAP sing 315 n n C3B C2B NAP sing 316 n n C3B H3B NAP sing 317 n n O3B HO3A NAP sing 318 n n C2B O2B NAP sing 319 n n C2B C1B NAP sing 320 n n C2B H2B NAP sing 321 n n O2B P2B NAP sing 322 n n C1B N9A NAP sing 323 n n C1B H1B NAP sing 324 n n N9A C8A NAP sing 325 n y N9A C4A NAP sing 326 n y C8A N7A NAP doub 327 n y C8A H8A NAP sing 328 n n N7A C5A NAP sing 329 n y C5A C6A NAP sing 330 n y C5A C4A NAP doub 331 n y C6A N6A NAP sing 332 n n C6A N1A NAP doub 333 n y N6A H61A NAP sing 334 n n N6A H62A NAP sing 335 n n N1A C2A NAP sing 336 n y C2A N3A NAP doub 337 n y C2A H2A NAP sing 338 n n N3A C4A NAP sing 339 n y O3 PN NAP sing 340 n n PN O1N NAP doub 341 n n PN O2N NAP sing 342 n n PN O5D NAP sing 343 n n O5D C5D NAP sing 344 n n C5D C4D NAP sing 345 n n C5D H51N NAP sing 346 n n C5D H52N NAP sing 347 n n C4D O4D NAP sing 348 n n C4D C3D NAP sing 349 n n C4D H4D NAP sing 350 n n O4D C1D NAP sing 351 n n C3D O3D NAP sing 352 n n C3D C2D NAP sing 353 n n C3D H3D NAP sing 354 n n O3D HO3N NAP sing 355 n n C2D O2D NAP sing 356 n n C2D C1D NAP sing 357 n n C2D H2D NAP sing 358 n n O2D HO2N NAP sing 359 n n C1D N1N NAP sing 360 n n C1D H1D NAP sing 361 n n N1N C2N NAP sing 362 n y N1N C6N NAP doub 363 n y C2N C3N NAP doub 364 n y C2N H2N NAP sing 365 n n C3N C7N NAP sing 366 n n C3N C4N NAP sing 367 n y C7N O7N NAP doub 368 n n C7N N7N NAP sing 369 n n N7N H71N NAP sing 370 n n N7N H72N NAP sing 371 n n C4N C5N NAP doub 372 n y C4N H4N NAP sing 373 n n C5N C6N NAP sing 374 n y C5N H5N NAP sing 375 n n C6N H6N NAP sing 376 n n P2B O1X NAP doub 377 n n P2B O2X NAP sing 378 n n P2B O3X NAP sing 379 n n O2X HOP2 NAP sing 380 n n O3X HOP3 NAP sing 381 n n # _atom_sites.entry_id 1QYW _atom_sites.fract_transf_matrix[1][1] 0.008154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001402 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5SD A 1 500 500 5SD ADN . C 3 NAP A 1 361 361 NAP NAP . D 4 GOL A 1 600 600 GOL GOL . E 5 HOH A 1 601 1 HOH WAT . E 5 HOH A 2 602 2 HOH WAT . E 5 HOH A 3 603 3 HOH WAT . E 5 HOH A 4 604 4 HOH WAT . E 5 HOH A 5 605 5 HOH WAT . E 5 HOH A 6 606 6 HOH WAT . E 5 HOH A 7 607 7 HOH WAT . E 5 HOH A 8 608 8 HOH WAT . E 5 HOH A 9 609 9 HOH WAT . E 5 HOH A 10 610 10 HOH WAT . E 5 HOH A 11 611 11 HOH WAT . E 5 HOH A 12 612 12 HOH WAT . E 5 HOH A 13 613 13 HOH WAT . E 5 HOH A 14 614 14 HOH WAT . E 5 HOH A 15 615 15 HOH WAT . E 5 HOH A 16 616 16 HOH WAT . E 5 HOH A 17 617 17 HOH WAT . E 5 HOH A 18 618 18 HOH WAT . E 5 HOH A 19 619 19 HOH WAT . E 5 HOH A 20 620 20 HOH WAT . E 5 HOH A 21 621 21 HOH WAT . E 5 HOH A 22 622 22 HOH WAT . E 5 HOH A 23 623 23 HOH WAT . E 5 HOH A 24 624 24 HOH WAT . E 5 HOH A 25 625 25 HOH WAT . E 5 HOH A 26 626 26 HOH WAT . E 5 HOH A 27 627 27 HOH WAT . E 5 HOH A 28 628 28 HOH WAT . E 5 HOH A 29 629 29 HOH WAT . E 5 HOH A 30 630 30 HOH WAT . E 5 HOH A 31 631 31 HOH WAT . E 5 HOH A 32 632 32 HOH WAT . E 5 HOH A 33 633 33 HOH WAT . E 5 HOH A 34 634 34 HOH WAT . E 5 HOH A 35 635 35 HOH WAT . E 5 HOH A 36 636 36 HOH WAT . E 5 HOH A 37 637 37 HOH WAT . E 5 HOH A 38 638 38 HOH WAT . E 5 HOH A 39 639 39 HOH WAT . E 5 HOH A 40 640 40 HOH WAT . E 5 HOH A 41 641 41 HOH WAT . E 5 HOH A 42 642 42 HOH WAT . E 5 HOH A 43 643 43 HOH WAT . E 5 HOH A 44 644 44 HOH WAT . E 5 HOH A 45 645 45 HOH WAT . E 5 HOH A 46 646 46 HOH WAT . E 5 HOH A 47 647 47 HOH WAT . E 5 HOH A 48 648 48 HOH WAT . E 5 HOH A 49 649 49 HOH WAT . E 5 HOH A 50 650 50 HOH WAT . E 5 HOH A 51 651 51 HOH WAT . E 5 HOH A 52 652 52 HOH WAT . E 5 HOH A 53 653 53 HOH WAT . E 5 HOH A 54 654 54 HOH WAT . E 5 HOH A 55 655 55 HOH WAT . E 5 HOH A 56 656 56 HOH WAT . E 5 HOH A 57 657 57 HOH WAT . E 5 HOH A 58 658 58 HOH WAT . E 5 HOH A 59 659 59 HOH WAT . E 5 HOH A 60 660 60 HOH WAT . E 5 HOH A 61 661 61 HOH WAT . E 5 HOH A 62 662 62 HOH WAT . E 5 HOH A 63 663 63 HOH WAT . E 5 HOH A 64 664 64 HOH WAT . E 5 HOH A 65 665 65 HOH WAT . E 5 HOH A 66 666 66 HOH WAT . E 5 HOH A 67 667 67 HOH WAT . E 5 HOH A 68 668 68 HOH WAT . E 5 HOH A 69 669 69 HOH WAT . E 5 HOH A 70 670 70 HOH WAT . E 5 HOH A 71 671 71 HOH WAT . E 5 HOH A 72 672 72 HOH WAT . E 5 HOH A 73 673 73 HOH WAT . E 5 HOH A 74 674 74 HOH WAT . E 5 HOH A 75 675 75 HOH WAT . E 5 HOH A 76 676 76 HOH WAT . E 5 HOH A 77 677 77 HOH WAT . E 5 HOH A 78 678 78 HOH WAT . E 5 HOH A 79 679 79 HOH WAT . E 5 HOH A 80 680 80 HOH WAT . E 5 HOH A 81 681 81 HOH WAT . E 5 HOH A 82 682 82 HOH WAT . E 5 HOH A 83 683 83 HOH WAT . E 5 HOH A 84 684 84 HOH WAT . E 5 HOH A 85 685 85 HOH WAT . E 5 HOH A 86 686 86 HOH WAT . E 5 HOH A 87 687 87 HOH WAT . E 5 HOH A 88 688 88 HOH WAT . E 5 HOH A 89 689 89 HOH WAT . E 5 HOH A 90 690 90 HOH WAT . E 5 HOH A 91 691 91 HOH WAT . E 5 HOH A 92 692 92 HOH WAT . E 5 HOH A 93 693 93 HOH WAT . E 5 HOH A 94 694 94 HOH WAT . E 5 HOH A 95 695 95 HOH WAT . E 5 HOH A 96 696 96 HOH WAT . E 5 HOH A 97 697 97 HOH WAT . E 5 HOH A 98 698 98 HOH WAT . E 5 HOH A 99 699 99 HOH WAT . E 5 HOH A 100 700 100 HOH WAT . E 5 HOH A 101 701 101 HOH WAT . E 5 HOH A 102 702 102 HOH WAT . E 5 HOH A 103 703 103 HOH WAT . E 5 HOH A 104 704 104 HOH WAT . E 5 HOH A 105 705 105 HOH WAT . E 5 HOH A 106 706 106 HOH WAT . E 5 HOH A 107 707 107 HOH WAT . E 5 HOH A 108 708 108 HOH WAT . E 5 HOH A 109 709 109 HOH WAT . E 5 HOH A 110 710 110 HOH WAT . E 5 HOH A 111 711 111 HOH WAT . E 5 HOH A 112 712 112 HOH WAT . E 5 HOH A 113 713 113 HOH WAT . E 5 HOH A 114 714 114 HOH WAT . E 5 HOH A 115 715 115 HOH WAT . E 5 HOH A 116 716 116 HOH WAT . E 5 HOH A 117 717 117 HOH WAT . E 5 HOH A 118 718 118 HOH WAT . E 5 HOH A 119 719 119 HOH WAT . E 5 HOH A 120 720 120 HOH WAT . E 5 HOH A 121 721 121 HOH WAT . E 5 HOH A 122 722 122 HOH WAT . E 5 HOH A 123 723 123 HOH WAT . E 5 HOH A 124 724 124 HOH WAT . E 5 HOH A 125 725 125 HOH WAT . E 5 HOH A 126 726 126 HOH WAT . E 5 HOH A 127 727 127 HOH WAT . E 5 HOH A 128 728 128 HOH WAT . E 5 HOH A 129 729 129 HOH WAT . E 5 HOH A 130 730 130 HOH WAT . E 5 HOH A 131 731 131 HOH WAT . E 5 HOH A 132 732 132 HOH WAT . E 5 HOH A 133 733 133 HOH WAT . E 5 HOH A 134 734 134 HOH WAT . E 5 HOH A 135 735 135 HOH WAT . E 5 HOH A 136 736 136 HOH WAT . E 5 HOH A 137 737 137 HOH WAT . E 5 HOH A 138 738 138 HOH WAT . E 5 HOH A 139 739 139 HOH WAT . E 5 HOH A 140 740 140 HOH WAT . E 5 HOH A 141 741 141 HOH WAT . E 5 HOH A 142 742 142 HOH WAT . E 5 HOH A 143 743 143 HOH WAT . E 5 HOH A 144 744 144 HOH WAT . E 5 HOH A 145 745 145 HOH WAT . E 5 HOH A 146 746 146 HOH WAT . E 5 HOH A 147 747 147 HOH WAT . E 5 HOH A 148 748 148 HOH WAT . E 5 HOH A 149 749 149 HOH WAT . E 5 HOH A 150 750 150 HOH WAT . E 5 HOH A 151 751 151 HOH WAT . E 5 HOH A 152 752 152 HOH WAT . E 5 HOH A 153 753 153 HOH WAT . E 5 HOH A 154 754 154 HOH WAT . E 5 HOH A 155 755 155 HOH WAT . E 5 HOH A 156 756 156 HOH WAT . E 5 HOH A 157 757 157 HOH WAT . E 5 HOH A 158 758 158 HOH WAT . E 5 HOH A 159 759 159 HOH WAT . E 5 HOH A 160 760 160 HOH WAT . E 5 HOH A 161 761 161 HOH WAT . E 5 HOH A 162 762 162 HOH WAT . E 5 HOH A 163 763 163 HOH WAT . E 5 HOH A 164 764 164 HOH WAT . E 5 HOH A 165 765 165 HOH WAT . E 5 HOH A 166 766 166 HOH WAT . E 5 HOH A 167 767 167 HOH WAT . E 5 HOH A 168 768 168 HOH WAT . E 5 HOH A 169 769 169 HOH WAT . E 5 HOH A 170 770 170 HOH WAT . E 5 HOH A 171 771 171 HOH WAT . E 5 HOH A 172 772 172 HOH WAT . E 5 HOH A 173 773 173 HOH WAT . E 5 HOH A 174 774 174 HOH WAT . E 5 HOH A 175 775 175 HOH WAT . E 5 HOH A 176 776 176 HOH WAT . E 5 HOH A 177 777 177 HOH WAT . E 5 HOH A 178 778 178 HOH WAT . E 5 HOH A 179 779 179 HOH WAT . E 5 HOH A 180 780 180 HOH WAT . E 5 HOH A 181 781 181 HOH WAT . E 5 HOH A 182 782 182 HOH WAT . E 5 HOH A 183 783 183 HOH WAT . E 5 HOH A 184 784 184 HOH WAT . E 5 HOH A 185 785 185 HOH WAT . E 5 HOH A 186 786 186 HOH WAT . E 5 HOH A 187 787 187 HOH WAT . E 5 HOH A 188 788 188 HOH WAT . E 5 HOH A 189 789 189 HOH WAT . E 5 HOH A 190 790 190 HOH WAT . E 5 HOH A 191 791 191 HOH WAT . E 5 HOH A 192 792 192 HOH WAT . E 5 HOH A 193 793 193 HOH WAT . E 5 HOH A 194 794 194 HOH WAT . E 5 HOH A 195 795 195 HOH WAT . E 5 HOH A 196 796 196 HOH WAT . E 5 HOH A 197 797 197 HOH WAT . E 5 HOH A 198 798 198 HOH WAT . E 5 HOH A 199 799 199 HOH WAT . E 5 HOH A 200 800 200 HOH WAT . E 5 HOH A 201 801 201 HOH WAT . E 5 HOH A 202 802 202 HOH WAT . E 5 HOH A 203 803 203 HOH WAT . E 5 HOH A 204 804 204 HOH WAT . E 5 HOH A 205 805 205 HOH WAT . E 5 HOH A 206 806 206 HOH WAT . E 5 HOH A 207 807 207 HOH WAT . E 5 HOH A 208 808 208 HOH WAT . E 5 HOH A 209 809 209 HOH WAT . E 5 HOH A 210 810 210 HOH WAT . E 5 HOH A 211 811 211 HOH WAT . E 5 HOH A 212 812 212 HOH WAT . E 5 HOH A 213 813 213 HOH WAT . E 5 HOH A 214 814 214 HOH WAT . E 5 HOH A 215 815 215 HOH WAT . E 5 HOH A 216 816 216 HOH WAT . E 5 HOH A 217 817 217 HOH WAT . E 5 HOH A 218 818 218 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 17.866 -2.236 -5.405 0.75 49.1 ? PA NAP 361 A 1 HETATM 2 O O1A NAP . . . C 3 16.522 -2.465 -5.979 0.75 48.28 ? O1A NAP 361 A 1 HETATM 3 O O2A NAP . . . C 3 19.017 -2.885 -6.101 0.75 48.95 ? O2A NAP 361 A 1 HETATM 4 O O5B NAP . . . C 3 17.755 -2.633 -3.884 0.75 42.74 ? O5B NAP 361 A 1 HETATM 5 C C5B NAP . . . C 3 16.81 -3.531 -3.46 0.75 37.03 ? C5B NAP 361 A 1 HETATM 6 C C4B NAP . . . C 3 17.358 -4.574 -2.515 0.75 31.51 ? C4B NAP 361 A 1 HETATM 7 O O4B NAP . . . C 3 16.176 -5.212 -2.104 0.75 31.44 ? O4B NAP 361 A 1 HETATM 8 C C3B NAP . . . C 3 18.206 -5.665 -3.229 0.75 34.5 ? C3B NAP 361 A 1 HETATM 9 O O3B NAP . . . C 3 19.352 -5.947 -2.409 0.75 34.61 ? O3B NAP 361 A 1 HETATM 10 C C2B NAP . . . C 3 17.243 -6.825 -3.259 0.01 32.12 ? C2B NAP 361 A 1 HETATM 11 O O2B NAP . . . C 3 17.854 -8.115 -3.34 0.01 30.46 ? O2B NAP 361 A 1 HETATM 12 C C1B NAP . . . C 3 16.447 -6.593 -1.957 0.75 33.26 ? C1B NAP 361 A 1 HETATM 13 N N9A NAP . . . C 3 15.345 -7.495 -1.873 0.75 33.3 ? N9A NAP 361 A 1 HETATM 14 C C8A NAP . . . C 3 14.392 -7.81 -2.821 0.75 34.5 ? C8A NAP 361 A 1 HETATM 15 N N7A NAP . . . C 3 13.57 -8.779 -2.345 0.75 34.33 ? N7A NAP 361 A 1 HETATM 16 C C5A NAP . . . C 3 14.036 -9.034 -1.103 0.75 31.66 ? C5A NAP 361 A 1 HETATM 17 C C6A NAP . . . C 3 13.547 -9.949 -0.186 0.75 33.09 ? C6A NAP 361 A 1 HETATM 18 N N6A NAP . . . C 3 12.49 -10.71 -0.419 0.75 28.65 ? N6A NAP 361 A 1 HETATM 19 N N1A NAP . . . C 3 14.196 -10.052 1.056 0.75 32.49 ? N1A NAP 361 A 1 HETATM 20 C C2A NAP . . . C 3 15.27 -9.282 1.32 0.75 34.44 ? C2A NAP 361 A 1 HETATM 21 N N3A NAP . . . C 3 15.779 -8.398 0.419 0.75 33.76 ? N3A NAP 361 A 1 HETATM 22 C C4A NAP . . . C 3 15.14 -8.261 -0.819 0.75 34.07 ? C4A NAP 361 A 1 HETATM 23 O O3 NAP . . . C 3 17.931 -0.648 -5.559 0.75 47.19 ? O3 NAP 361 A 1 HETATM 24 P P2B NAP . . . C 3 17.54 -9.206 -4.526 0.01 29.27 ? P2B NAP 361 A 1 HETATM 25 O O1X NAP . . . C 3 17.395 -8.341 -5.793 0.01 29.08 ? O1X NAP 361 A 1 HETATM 26 O O2X NAP . . . C 3 18.694 -10.156 -4.495 0.01 28.93 ? O2X NAP 361 A 1 HETATM 27 O O3X NAP . . . C 3 16.187 -9.826 -4.152 0.01 28.95 ? O3X NAP 361 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #