data_1QYX # _model_server_result.job_id NgonodmKIxM_PHCr2pZfIQ _model_server_result.datetime_utc '2025-03-04 22:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":361}' # _entry.id 1QYX # _exptl.entry_id 1QYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.52 _cell.angle_gamma 90 _cell.entry_id 1QYX _cell.length_a 122.7 _cell.length_b 44.03 _cell.length_c 60.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 300 n n PA O2A NAP sing 301 n n PA O5B NAP sing 302 n n PA O3 NAP sing 303 n n O2A HOA2 NAP sing 304 n n O5B C5B NAP sing 305 n n C5B C4B NAP sing 306 n n C5B H51A NAP sing 307 n n C5B H52A NAP sing 308 n n C4B O4B NAP sing 309 n n C4B C3B NAP sing 310 n n C4B H4B NAP sing 311 n n O4B C1B NAP sing 312 n n C3B O3B NAP sing 313 n n C3B C2B NAP sing 314 n n C3B H3B NAP sing 315 n n O3B HO3A NAP sing 316 n n C2B O2B NAP sing 317 n n C2B C1B NAP sing 318 n n C2B H2B NAP sing 319 n n O2B P2B NAP sing 320 n n C1B N9A NAP sing 321 n n C1B H1B NAP sing 322 n n N9A C8A NAP sing 323 n y N9A C4A NAP sing 324 n y C8A N7A NAP doub 325 n y C8A H8A NAP sing 326 n n N7A C5A NAP sing 327 n y C5A C6A NAP sing 328 n y C5A C4A NAP doub 329 n y C6A N6A NAP sing 330 n n C6A N1A NAP doub 331 n y N6A H61A NAP sing 332 n n N6A H62A NAP sing 333 n n N1A C2A NAP sing 334 n y C2A N3A NAP doub 335 n y C2A H2A NAP sing 336 n n N3A C4A NAP sing 337 n y O3 PN NAP sing 338 n n PN O1N NAP doub 339 n n PN O2N NAP sing 340 n n PN O5D NAP sing 341 n n O5D C5D NAP sing 342 n n C5D C4D NAP sing 343 n n C5D H51N NAP sing 344 n n C5D H52N NAP sing 345 n n C4D O4D NAP sing 346 n n C4D C3D NAP sing 347 n n C4D H4D NAP sing 348 n n O4D C1D NAP sing 349 n n C3D O3D NAP sing 350 n n C3D C2D NAP sing 351 n n C3D H3D NAP sing 352 n n O3D HO3N NAP sing 353 n n C2D O2D NAP sing 354 n n C2D C1D NAP sing 355 n n C2D H2D NAP sing 356 n n O2D HO2N NAP sing 357 n n C1D N1N NAP sing 358 n n C1D H1D NAP sing 359 n n N1N C2N NAP sing 360 n y N1N C6N NAP doub 361 n y C2N C3N NAP doub 362 n y C2N H2N NAP sing 363 n n C3N C7N NAP sing 364 n n C3N C4N NAP sing 365 n y C7N O7N NAP doub 366 n n C7N N7N NAP sing 367 n n N7N H71N NAP sing 368 n n N7N H72N NAP sing 369 n n C4N C5N NAP doub 370 n y C4N H4N NAP sing 371 n n C5N C6N NAP sing 372 n y C5N H5N NAP sing 373 n n C6N H6N NAP sing 374 n n P2B O1X NAP doub 375 n n P2B O2X NAP sing 376 n n P2B O3X NAP sing 377 n n O2X HOP2 NAP sing 378 n n O3X HOP3 NAP sing 379 n n # _atom_sites.entry_id 1QYX _atom_sites.fract_transf_matrix[1][1] 0.00815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001367 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ASD A 1 500 500 ASD ASD . C 3 NAP A 1 361 361 NAP NAP . D 4 GOL A 1 600 600 GOL GOL . E 5 HOH A 1 601 1 HOH WAT . E 5 HOH A 2 602 2 HOH WAT . E 5 HOH A 3 603 3 HOH WAT . E 5 HOH A 4 604 4 HOH WAT . E 5 HOH A 5 605 5 HOH WAT . E 5 HOH A 6 606 6 HOH WAT . E 5 HOH A 7 607 7 HOH WAT . E 5 HOH A 8 608 8 HOH WAT . E 5 HOH A 9 609 9 HOH WAT . E 5 HOH A 10 610 10 HOH WAT . E 5 HOH A 11 611 11 HOH WAT . E 5 HOH A 12 612 12 HOH WAT . E 5 HOH A 13 613 13 HOH WAT . E 5 HOH A 14 614 14 HOH WAT . E 5 HOH A 15 615 15 HOH WAT . E 5 HOH A 16 616 16 HOH WAT . E 5 HOH A 17 617 17 HOH WAT . E 5 HOH A 18 618 18 HOH WAT . E 5 HOH A 19 619 19 HOH WAT . E 5 HOH A 20 620 20 HOH WAT . E 5 HOH A 21 621 21 HOH WAT . E 5 HOH A 22 622 22 HOH WAT . E 5 HOH A 23 623 23 HOH WAT . E 5 HOH A 24 624 24 HOH WAT . E 5 HOH A 25 625 25 HOH WAT . E 5 HOH A 26 626 26 HOH WAT . E 5 HOH A 27 627 27 HOH WAT . E 5 HOH A 28 628 28 HOH WAT . E 5 HOH A 29 629 29 HOH WAT . E 5 HOH A 30 630 30 HOH WAT . E 5 HOH A 31 631 31 HOH WAT . E 5 HOH A 32 632 32 HOH WAT . E 5 HOH A 33 633 33 HOH WAT . E 5 HOH A 34 634 34 HOH WAT . E 5 HOH A 35 635 35 HOH WAT . E 5 HOH A 36 636 36 HOH WAT . E 5 HOH A 37 637 37 HOH WAT . E 5 HOH A 38 638 38 HOH WAT . E 5 HOH A 39 639 39 HOH WAT . E 5 HOH A 40 640 40 HOH WAT . E 5 HOH A 41 641 41 HOH WAT . E 5 HOH A 42 642 42 HOH WAT . E 5 HOH A 43 643 43 HOH WAT . E 5 HOH A 44 644 44 HOH WAT . E 5 HOH A 45 645 45 HOH WAT . E 5 HOH A 46 646 46 HOH WAT . E 5 HOH A 47 647 47 HOH WAT . E 5 HOH A 48 648 48 HOH WAT . E 5 HOH A 49 649 49 HOH WAT . E 5 HOH A 50 650 50 HOH WAT . E 5 HOH A 51 651 51 HOH WAT . E 5 HOH A 52 652 52 HOH WAT . E 5 HOH A 53 653 53 HOH WAT . E 5 HOH A 54 654 54 HOH WAT . E 5 HOH A 55 655 55 HOH WAT . E 5 HOH A 56 656 56 HOH WAT . E 5 HOH A 57 657 57 HOH WAT . E 5 HOH A 58 658 58 HOH WAT . E 5 HOH A 59 659 59 HOH WAT . E 5 HOH A 60 660 60 HOH WAT . E 5 HOH A 61 661 61 HOH WAT . E 5 HOH A 62 662 62 HOH WAT . E 5 HOH A 63 663 63 HOH WAT . E 5 HOH A 64 664 64 HOH WAT . E 5 HOH A 65 665 65 HOH WAT . E 5 HOH A 66 666 66 HOH WAT . E 5 HOH A 67 667 67 HOH WAT . E 5 HOH A 68 668 68 HOH WAT . E 5 HOH A 69 669 69 HOH WAT . E 5 HOH A 70 670 70 HOH WAT . E 5 HOH A 71 671 71 HOH WAT . E 5 HOH A 72 672 72 HOH WAT . E 5 HOH A 73 673 73 HOH WAT . E 5 HOH A 74 674 74 HOH WAT . E 5 HOH A 75 675 75 HOH WAT . E 5 HOH A 76 676 76 HOH WAT . E 5 HOH A 77 677 77 HOH WAT . E 5 HOH A 78 678 78 HOH WAT . E 5 HOH A 79 679 79 HOH WAT . E 5 HOH A 80 680 80 HOH WAT . E 5 HOH A 81 681 81 HOH WAT . E 5 HOH A 82 682 82 HOH WAT . E 5 HOH A 83 683 83 HOH WAT . E 5 HOH A 84 684 84 HOH WAT . E 5 HOH A 85 685 85 HOH WAT . E 5 HOH A 86 686 86 HOH WAT . E 5 HOH A 87 687 87 HOH WAT . E 5 HOH A 88 688 88 HOH WAT . E 5 HOH A 89 689 89 HOH WAT . E 5 HOH A 90 690 90 HOH WAT . E 5 HOH A 91 691 91 HOH WAT . E 5 HOH A 92 692 92 HOH WAT . E 5 HOH A 93 693 93 HOH WAT . E 5 HOH A 94 694 94 HOH WAT . E 5 HOH A 95 695 95 HOH WAT . E 5 HOH A 96 696 96 HOH WAT . E 5 HOH A 97 697 97 HOH WAT . E 5 HOH A 98 698 98 HOH WAT . E 5 HOH A 99 699 99 HOH WAT . E 5 HOH A 100 700 100 HOH WAT . E 5 HOH A 101 701 101 HOH WAT . E 5 HOH A 102 702 102 HOH WAT . E 5 HOH A 103 703 103 HOH WAT . E 5 HOH A 104 704 104 HOH WAT . E 5 HOH A 105 705 105 HOH WAT . E 5 HOH A 106 706 106 HOH WAT . E 5 HOH A 107 707 107 HOH WAT . E 5 HOH A 108 708 108 HOH WAT . E 5 HOH A 109 709 109 HOH WAT . E 5 HOH A 110 710 110 HOH WAT . E 5 HOH A 111 711 111 HOH WAT . E 5 HOH A 112 712 112 HOH WAT . E 5 HOH A 113 713 113 HOH WAT . E 5 HOH A 114 714 114 HOH WAT . E 5 HOH A 115 715 115 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 18.087 -2.153 -5.487 0.75 62.61 ? PA NAP 361 A 1 HETATM 2 O O1A NAP . . . C 3 17.086 -2.847 -6.329 0.75 62.52 ? O1A NAP 361 A 1 HETATM 3 O O2A NAP . . . C 3 19.525 -2.258 -5.878 0.75 60.16 ? O2A NAP 361 A 1 HETATM 4 O O5B NAP . . . C 3 17.721 -2.516 -3.999 0.75 58.15 ? O5B NAP 361 A 1 HETATM 5 C C5B NAP . . . C 3 16.78 -3.392 -3.546 0.75 49.17 ? C5B NAP 361 A 1 HETATM 6 C C4B NAP . . . C 3 17.358 -4.414 -2.582 0.75 43.03 ? C4B NAP 361 A 1 HETATM 7 O O4B NAP . . . C 3 16.246 -5.089 -2.057 0.75 43.64 ? O4B NAP 361 A 1 HETATM 8 C C3B NAP . . . C 3 18.217 -5.493 -3.289 0.75 42.91 ? C3B NAP 361 A 1 HETATM 9 O O3B NAP . . . C 3 19.337 -5.767 -2.438 0.75 46.04 ? O3B NAP 361 A 1 HETATM 10 C C2B NAP . . . C 3 17.275 -6.677 -3.301 0.01 41.66 ? C2B NAP 361 A 1 HETATM 11 O O2B NAP . . . C 3 17.963 -7.929 -3.382 0.01 40.18 ? O2B NAP 361 A 1 HETATM 12 C C1B NAP . . . C 3 16.493 -6.488 -1.983 0.75 41.97 ? C1B NAP 361 A 1 HETATM 13 N N9A NAP . . . C 3 15.412 -7.431 -1.864 0.75 40.05 ? N9A NAP 361 A 1 HETATM 14 C C8A NAP . . . C 3 14.447 -7.836 -2.76 0.75 39.83 ? C8A NAP 361 A 1 HETATM 15 N N7A NAP . . . C 3 13.626 -8.812 -2.222 0.75 37.91 ? N7A NAP 361 A 1 HETATM 16 C C5A NAP . . . C 3 14.144 -9 -0.976 0.75 35.62 ? C5A NAP 361 A 1 HETATM 17 C C6A NAP . . . C 3 13.743 -9.911 -0.006 0.75 36.13 ? C6A NAP 361 A 1 HETATM 18 N N6A NAP . . . C 3 12.703 -10.743 -0.205 0.75 30.91 ? N6A NAP 361 A 1 HETATM 19 N N1A NAP . . . C 3 14.411 -9.973 1.254 0.75 32.8 ? N1A NAP 361 A 1 HETATM 20 C C2A NAP . . . C 3 15.453 -9.131 1.41 0.75 40.38 ? C2A NAP 361 A 1 HETATM 21 N N3A NAP . . . C 3 15.899 -8.281 0.445 0.75 39.09 ? N3A NAP 361 A 1 HETATM 22 C C4A NAP . . . C 3 15.241 -8.178 -0.782 0.75 37.68 ? C4A NAP 361 A 1 HETATM 23 O O3 NAP . . . C 3 17.533 -0.645 -5.662 0.75 61.6 ? O3 NAP 361 A 1 HETATM 24 P P2B NAP . . . C 3 18.094 -8.847 -4.733 0.01 39.34 ? P2B NAP 361 A 1 HETATM 25 O O1X NAP . . . C 3 18.412 -7.828 -5.845 0.01 39.14 ? O1X NAP 361 A 1 HETATM 26 O O2X NAP . . . C 3 19.156 -9.851 -4.423 0.01 39.18 ? O2X NAP 361 A 1 HETATM 27 O O3X NAP . . . C 3 16.695 -9.44 -4.948 0.01 39.15 ? O3X NAP 361 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 542 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 27 #