data_1QYY # _model_server_result.job_id DW9MBqg7i6PwZWNqTZEM4w _model_server_result.datetime_utc '2024-11-16 00:48:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 1QYY # _exptl.entry_id 1QYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.21 _cell.angle_gamma 90 _cell.entry_id 1QYY _cell.length_a 51.61 _cell.length_b 113.82 _cell.length_c 56.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 B 1 NAG N 501 NAG 2 n C NAG 2 B 2 NAG N 502 NAG 2 n C MAN 3 B 3 MAN N 503 MAN 2 n C MAN 4 B 4 MAN N 504 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 17 A CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 209 A CYS 209 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 211 A CYS 211 1_555 A SG CYS 264 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 4 G CYS 4 1_555 B SG CYS 17 G CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 209 G CYS 209 1_555 B SG CYS 248 G CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 B SG CYS 211 G CYS 211 1_555 B SG CYS 264 G CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 159 A ASN 159 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 B ND2 ASN 159 G ASN 159 1_555 F C1 NAG . G NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale4 C O4 NAG . B NAG 2 1_555 C C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale5 C O3 MAN . B MAN 3 1_555 C C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 D PT PT . A PT 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A ND1 HIS 195 A HIS 195 1_555 E PT PT . A PT 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc3 E PT PT . A PT 506 1_555 H O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc4 B NE2 HIS 86 G HIS 86 1_555 G PT PT . G PT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1QYY _atom_sites.fract_transf_matrix[1][1] 0.019376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001767 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PT A 1 505 2 PT PT . E 3 PT A 1 506 3 PT PT . F 4 NAG G 1 601 601 NAG NAG . G 3 PT G 1 602 1 PT PT . H 5 HOH A 1 507 4 HOH TIP . H 5 HOH A 2 508 5 HOH TIP . H 5 HOH A 3 509 6 HOH TIP . H 5 HOH A 4 510 8 HOH TIP . H 5 HOH A 5 511 11 HOH TIP . H 5 HOH A 6 512 12 HOH TIP . H 5 HOH A 7 513 13 HOH TIP . H 5 HOH A 8 514 15 HOH TIP . H 5 HOH A 9 515 16 HOH TIP . H 5 HOH A 10 516 17 HOH TIP . H 5 HOH A 11 517 20 HOH TIP . H 5 HOH A 12 518 21 HOH TIP . H 5 HOH A 13 519 23 HOH TIP . H 5 HOH A 14 520 27 HOH TIP . H 5 HOH A 15 521 28 HOH TIP . H 5 HOH A 16 522 31 HOH TIP . H 5 HOH A 17 523 33 HOH TIP . H 5 HOH A 18 524 35 HOH TIP . H 5 HOH A 19 525 44 HOH TIP . H 5 HOH A 20 526 45 HOH TIP . H 5 HOH A 21 527 46 HOH TIP . H 5 HOH A 22 528 47 HOH TIP . H 5 HOH A 23 529 49 HOH TIP . H 5 HOH A 24 530 50 HOH TIP . H 5 HOH A 25 531 51 HOH TIP . H 5 HOH A 26 532 55 HOH TIP . H 5 HOH A 27 533 56 HOH TIP . I 5 HOH G 1 603 1 HOH TIP . I 5 HOH G 2 604 2 HOH TIP . I 5 HOH G 3 605 3 HOH TIP . I 5 HOH G 4 606 7 HOH TIP . I 5 HOH G 5 607 9 HOH TIP . I 5 HOH G 6 608 10 HOH TIP . I 5 HOH G 7 609 14 HOH TIP . I 5 HOH G 8 610 18 HOH TIP . I 5 HOH G 9 611 19 HOH TIP . I 5 HOH G 10 612 22 HOH TIP . I 5 HOH G 11 613 24 HOH TIP . I 5 HOH G 12 614 25 HOH TIP . I 5 HOH G 13 615 26 HOH TIP . I 5 HOH G 14 616 29 HOH TIP . I 5 HOH G 15 617 30 HOH TIP . I 5 HOH G 16 618 32 HOH TIP . I 5 HOH G 17 619 34 HOH TIP . I 5 HOH G 18 620 36 HOH TIP . I 5 HOH G 19 621 37 HOH TIP . I 5 HOH G 20 622 38 HOH TIP . I 5 HOH G 21 623 39 HOH TIP . I 5 HOH G 22 624 40 HOH TIP . I 5 HOH G 23 625 41 HOH TIP . I 5 HOH G 24 626 42 HOH TIP . I 5 HOH G 25 627 43 HOH TIP . I 5 HOH G 26 628 48 HOH TIP . I 5 HOH G 27 629 52 HOH TIP . I 5 HOH G 28 630 53 HOH TIP . I 5 HOH G 29 631 54 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 -14.6 -49.634 -22.484 1 50.81 ? C1 NAG 601 G 1 HETATM 2 C C2 NAG . . . F 4 -14.839 -48.723 -23.695 1 57.7 ? C2 NAG 601 G 1 HETATM 3 C C3 NAG . . . F 4 -15.785 -47.569 -23.327 1 58.29 ? C3 NAG 601 G 1 HETATM 4 C C4 NAG . . . F 4 -17.069 -48.103 -22.682 1 60.11 ? C4 NAG 601 G 1 HETATM 5 C C5 NAG . . . F 4 -16.701 -49.007 -21.497 1 60.57 ? C5 NAG 601 G 1 HETATM 6 C C6 NAG . . . F 4 -17.917 -49.635 -20.834 1 62.75 ? C6 NAG 601 G 1 HETATM 7 C C7 NAG . . . F 4 -13.022 -48.641 -25.276 1 57.99 ? C7 NAG 601 G 1 HETATM 8 C C8 NAG . . . F 4 -11.567 -49.074 -25.201 1 55.09 ? C8 NAG 601 G 1 HETATM 9 N N2 NAG . . . F 4 -13.579 -48.179 -24.161 1 55.66 ? N2 NAG 601 G 1 HETATM 10 O O3 NAG . . . F 4 -16.114 -46.818 -24.489 1 60.99 ? O3 NAG 601 G 1 HETATM 11 O O4 NAG . . . F 4 -17.882 -47.014 -22.247 1 67.23 ? O4 NAG 601 G 1 HETATM 12 O O5 NAG . . . F 4 -15.854 -50.089 -21.948 1 55.84 ? O5 NAG 601 G 1 HETATM 13 O O6 NAG . . . F 4 -17.857 -51.056 -20.862 1 67.63 ? O6 NAG 601 G 1 HETATM 14 O O7 NAG . . . F 4 -13.632 -48.73 -26.34 1 54.28 ? O7 NAG 601 G 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #