data_1QYZ # _model_server_result.job_id p7ABh0v4tULslRhLtnXb8A _model_server_result.datetime_utc '2024-10-19 03:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qyz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 1QYZ # _exptl.entry_id 1QYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 634.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-ACETYL-PROTOPORPHYRIN IX' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QYZ _cell.length_a 87.463 _cell.length_b 87.463 _cell.length_c 32.209 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 B FE HCO . A HCO 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? covale ? covale1 A SG CYS 11 A CYS 11 1_555 B CBB HCO . A HCO 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A SD MET 69 A MET 69 1_555 B FE HCO . A HCO 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? covale ? covale2 A SG CYS 14 A CYS 14 1_555 B CAC HCO . A HCO 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? # _chem_comp.formula 'C34 H34 Fe N4 O5' _chem_comp.formula_weight 634.503 _chem_comp.id HCO _chem_comp.mon_nstd_flag . _chem_comp.name '2-ACETYL-PROTOPORPHYRIN IX' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1QYZ _atom_sites.fract_transf_matrix[1][1] 0.011433 _atom_sites.fract_transf_matrix[1][2] 0.006601 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HCO A 1 200 200 HCO HCO . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1036 1036 HOH HOH . C 3 HOH A 37 1037 1037 HOH HOH . C 3 HOH A 38 1038 1038 HOH HOH . C 3 HOH A 39 1039 1039 HOH HOH . C 3 HOH A 40 1040 1040 HOH HOH . C 3 HOH A 41 1041 1041 HOH HOH . C 3 HOH A 42 1042 1042 HOH HOH . C 3 HOH A 43 1043 1043 HOH HOH . C 3 HOH A 44 1044 1044 HOH HOH . C 3 HOH A 45 1045 1045 HOH HOH . C 3 HOH A 46 1046 1046 HOH HOH . C 3 HOH A 47 1047 1047 HOH HOH . C 3 HOH A 48 1048 1048 HOH HOH . C 3 HOH A 49 1049 1049 HOH HOH . C 3 HOH A 50 1050 1050 HOH HOH . C 3 HOH A 51 1051 1051 HOH HOH . C 3 HOH A 52 1052 1052 HOH HOH . C 3 HOH A 53 1053 1053 HOH HOH . C 3 HOH A 54 1054 1054 HOH HOH . C 3 HOH A 55 1055 1055 HOH HOH . C 3 HOH A 56 1056 1056 HOH HOH . C 3 HOH A 57 1057 1057 HOH HOH . C 3 HOH A 58 1058 1058 HOH HOH . C 3 HOH A 59 1059 1059 HOH HOH . C 3 HOH A 60 1060 1060 HOH HOH . C 3 HOH A 61 1061 1061 HOH HOH . C 3 HOH A 62 1062 1062 HOH HOH . C 3 HOH A 63 1063 1063 HOH HOH . C 3 HOH A 64 1065 1065 HOH HOH . C 3 HOH A 65 1066 1066 HOH HOH . C 3 HOH A 66 1067 1067 HOH HOH . C 3 HOH A 67 1068 1068 HOH HOH . C 3 HOH A 68 1069 1069 HOH HOH . C 3 HOH A 69 1070 1070 HOH HOH . C 3 HOH A 70 1071 1071 HOH HOH . C 3 HOH A 71 1072 1072 HOH HOH . C 3 HOH A 72 1073 1073 HOH HOH . C 3 HOH A 73 1074 1074 HOH HOH . C 3 HOH A 74 1075 1075 HOH HOH . C 3 HOH A 75 1076 1076 HOH HOH . C 3 HOH A 76 1077 1077 HOH HOH . C 3 HOH A 77 1078 1078 HOH HOH . C 3 HOH A 78 1079 1079 HOH HOH . C 3 HOH A 79 1080 1080 HOH HOH . C 3 HOH A 80 1081 1081 HOH HOH . C 3 HOH A 81 1084 1084 HOH HOH . C 3 HOH A 82 1085 1085 HOH HOH . C 3 HOH A 83 1086 1086 HOH HOH . C 3 HOH A 84 1087 1087 HOH HOH . C 3 HOH A 85 1088 1088 HOH HOH . C 3 HOH A 86 1089 1089 HOH HOH . C 3 HOH A 87 1090 1090 HOH HOH . C 3 HOH A 88 1091 1091 HOH HOH . C 3 HOH A 89 1092 1092 HOH HOH . C 3 HOH A 90 1093 1093 HOH HOH . C 3 HOH A 91 1094 1094 HOH HOH . C 3 HOH A 92 1095 1095 HOH HOH . C 3 HOH A 93 1096 1096 HOH HOH . C 3 HOH A 94 1098 1098 HOH HOH . C 3 HOH A 95 1099 1099 HOH HOH . C 3 HOH A 96 1100 1100 HOH HOH . C 3 HOH A 97 1104 1104 HOH HOH . C 3 HOH A 98 1107 1107 HOH HOH . C 3 HOH A 99 1109 1109 HOH HOH . C 3 HOH A 100 1110 1110 HOH HOH . C 3 HOH A 101 1111 1111 HOH HOH . C 3 HOH A 102 1114 1114 HOH HOH . C 3 HOH A 103 1116 1116 HOH HOH . C 3 HOH A 104 1119 1119 HOH HOH . C 3 HOH A 105 1124 1124 HOH HOH . C 3 HOH A 106 1127 1127 HOH HOH . C 3 HOH A 107 1139 1139 HOH HOH . C 3 HOH A 108 1140 1140 HOH HOH . C 3 HOH A 109 1141 1141 HOH HOH . C 3 HOH A 110 1144 1144 HOH HOH . C 3 HOH A 111 1145 1145 HOH HOH . C 3 HOH A 112 1146 1146 HOH HOH . C 3 HOH A 113 1148 1148 HOH HOH . C 3 HOH A 114 1149 1149 HOH HOH . C 3 HOH A 115 1153 1153 HOH HOH . C 3 HOH A 116 1159 1159 HOH HOH . C 3 HOH A 117 1160 1160 HOH HOH . C 3 HOH A 118 1161 1161 HOH HOH . C 3 HOH A 119 1169 1169 HOH HOH . C 3 HOH A 120 1174 1174 HOH HOH . C 3 HOH A 121 1188 1188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HCO . . . B 2 24.967 24.554 27.824 1 14.59 ? FE HCO 200 A 1 HETATM 2 C CHA HCO . . . B 2 21.569 24.693 27.446 1 14.63 ? CHA HCO 200 A 1 HETATM 3 C CHB HCO . . . B 2 25.218 22.727 24.971 1 14.2 ? CHB HCO 200 A 1 HETATM 4 C CHC HCO . . . B 2 28.324 24.884 27.99 1 14.98 ? CHC HCO 200 A 1 HETATM 5 C CHD HCO . . . B 2 24.643 25.931 30.923 1 14.89 ? CHD HCO 200 A 1 HETATM 6 N NA HCO . . . B 2 23.665 23.829 26.503 1 14.38 ? NA HCO 200 A 1 HETATM 7 N NB HCO . . . B 2 26.51 23.885 26.733 1 14.88 ? NB HCO 200 A 1 HETATM 8 N NC HCO . . . B 2 26.228 25.363 29.171 1 15.09 ? NC HCO 200 A 1 HETATM 9 N ND HCO . . . B 2 23.398 25.185 28.983 1 15.11 ? ND HCO 200 A 1 HETATM 10 C C1A HCO . . . B 2 22.251 24.022 26.458 1 14.92 ? C1A HCO 200 A 1 HETATM 11 C C2A HCO . . . B 2 21.743 23.455 25.314 1 14.94 ? C2A HCO 200 A 1 HETATM 12 C C3A HCO . . . B 2 22.745 22.782 24.645 1 14.07 ? C3A HCO 200 A 1 HETATM 13 C C4A HCO . . . B 2 23.906 23.119 25.349 1 13.74 ? C4A HCO 200 A 1 HETATM 14 C CMA HCO . . . B 2 22.68 22.117 23.295 1 16.12 ? CMA HCO 200 A 1 HETATM 15 C CAA HCO . . . B 2 20.233 23.433 24.848 1 15.47 ? CAA HCO 200 A 1 HETATM 16 C CBA HCO . . . B 2 19.385 22.393 25.575 1 15.57 ? CBA HCO 200 A 1 HETATM 17 C CGA HCO . . . B 2 17.889 22.617 25.281 1 14.76 ? CGA HCO 200 A 1 HETATM 18 O O1A HCO . . . B 2 17.104 21.814 25.747 1 15.36 ? O1A HCO 200 A 1 HETATM 19 O O2A HCO . . . B 2 17.478 23.646 24.685 1 16.31 ? O2A HCO 200 A 1 HETATM 20 C C1B HCO . . . B 2 26.434 23.152 25.575 1 13.2 ? C1B HCO 200 A 1 HETATM 21 C C2B HCO . . . B 2 27.764 22.853 25.098 1 15.01 ? C2B HCO 200 A 1 HETATM 22 C C3B HCO . . . B 2 28.603 23.589 25.866 1 17.25 ? C3B HCO 200 A 1 HETATM 23 C C4B HCO . . . B 2 27.853 24.141 26.896 1 15.08 ? C4B HCO 200 A 1 HETATM 24 C CMB HCO . . . B 2 28.034 21.89 23.882 1 15.9 ? CMB HCO 200 A 1 HETATM 25 C CAB HCO . . . B 2 30.12 23.553 25.77 1 21.07 ? CAB HCO 200 A 1 HETATM 26 C CBB HCO . . . B 2 30.799 22.192 26.143 1 23.7 ? CBB HCO 200 A 1 HETATM 27 O OAB HCO . . . B 2 30.524 24.982 25.808 1 24.82 ? OAB HCO 200 A 1 HETATM 28 C C1C HCO . . . B 2 27.623 25.365 29.085 1 16.24 ? C1C HCO 200 A 1 HETATM 29 C C2C HCO . . . B 2 28.154 25.913 30.311 1 17.13 ? C2C HCO 200 A 1 HETATM 30 C C3C HCO . . . B 2 27.186 26.009 31.178 1 16.05 ? C3C HCO 200 A 1 HETATM 31 C C4C HCO . . . B 2 25.997 25.758 30.497 1 15.48 ? C4C HCO 200 A 1 HETATM 32 C CMC HCO . . . B 2 29.674 26.093 30.434 1 17.77 ? CMC HCO 200 A 1 HETATM 33 C CAC HCO . . . B 2 27.19 26.429 32.643 1 19.32 ? CAC HCO 200 A 1 HETATM 34 C CBC HCO . . . B 2 27.828 27.844 32.881 1 18.77 ? CBC HCO 200 A 1 HETATM 35 C C1D HCO . . . B 2 23.462 25.702 30.268 1 14.96 ? C1D HCO 200 A 1 HETATM 36 C C2D HCO . . . B 2 22.154 26.022 30.787 1 15.64 ? C2D HCO 200 A 1 HETATM 37 C C3D HCO . . . B 2 21.3 25.8 29.708 1 14.79 ? C3D HCO 200 A 1 HETATM 38 C C4D HCO . . . B 2 22.075 25.257 28.664 1 14.97 ? C4D HCO 200 A 1 HETATM 39 C CMD HCO . . . B 2 21.916 26.683 32.141 1 15.81 ? CMD HCO 200 A 1 HETATM 40 C CAD HCO . . . B 2 19.78 26.036 29.711 1 15.79 ? CAD HCO 200 A 1 HETATM 41 C CBD HCO . . . B 2 19.482 27.573 29.666 1 16.4 ? CBD HCO 200 A 1 HETATM 42 C CGD HCO . . . B 2 18.176 27.981 30.252 1 19.03 ? CGD HCO 200 A 1 HETATM 43 O O1D HCO . . . B 2 17.401 28.683 29.414 1 16.59 ? O1D HCO 200 A 1 HETATM 44 O O2D HCO . . . B 2 17.69 27.308 31.166 1 18.1 ? O2D HCO 200 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #