data_1R08 # _model_server_result.job_id PLg96oAaVBA1hQG2gMaHOg _model_server_result.datetime_utc '2024-12-13 15:40:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 1R08 # _exptl.entry_id 1R08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.347 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(5-(2,6-DICHLORO-4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)PENTYL)-3-(HYDROXYETHYL OXYMETHYLENEOXYMETHYL) ISOXAZOLE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R08 _cell.length_a 445.1 _cell.length_b 445.1 _cell.length_c 445.1 _cell.Z_PDB 240 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-MERIC 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 ? 80-meric 80 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 (1-60) A,B,C,D,E 2 1 A,B,C,D,E 3 (1-5) A,B,C,D,E 4 (1,2,6,10,23,24) A,B,C,D,E 5 P A,B,C,D,E 6 (X0)(1-5,11-15,21-25,36-40) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 P 'transform to point frame' ? ? -0.854538 -0.229454 0.465957 0.429788 -0.816111 0.386323 0.29163 0.530391 0.796014 0.10728 0 -0.28087 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.464282 -0.829905 0.309355 0.844397 0.309355 -0.437372 0.267276 0.464282 0.844397 0.18336 0.04923 -0.09998 3 'point symmetry operation' ? ? -0.402527 -0.498417 0.767824 0.536358 -0.808132 -0.2434 0.741817 0.313853 0.592625 0.1967 0.26302 -0.11254 4 'point symmetry operation' ? ? -0.402527 0.536358 0.741817 -0.498417 -0.808132 0.313853 0.767824 -0.2434 0.592625 0.02159 0.34591 -0.02032 5 'point symmetry operation' ? ? 0.464282 0.844397 0.267276 -0.829905 0.309355 0.464282 0.309355 -0.437372 0.844397 -0.09998 0.18336 0.04923 6 'point symmetry operation' ? ? -0.829905 0.309355 0.464282 0.309355 -0.437372 0.844397 0.464282 0.844397 0.267276 0.18336 0.04923 -0.09998 7 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 8 'point symmetry operation' ? ? 0.844397 0.309355 -0.437372 0.267276 0.464282 0.844397 0.464282 -0.829905 0.309355 0.04923 -0.09998 0.18336 9 'point symmetry operation' ? ? 0.536358 -0.808132 -0.2434 0.741817 0.313853 0.592625 -0.402527 -0.498417 0.767824 0.26302 -0.11254 0.1967 10 'point symmetry operation' ? ? -0.498417 -0.808132 0.313853 0.767824 -0.2434 0.592625 -0.402527 0.536358 0.741817 0.34591 -0.02032 0.02159 11 'point symmetry operation' ? ? -0.630565 -0.701509 0.332074 -0.701509 0.332074 -0.630565 0.332074 -0.630565 -0.701509 0.34718 0.34718 0.34718 12 'point symmetry operation' ? ? -0.796357 0.46047 0.392154 -0.213831 0.392154 -0.894702 -0.565768 -0.796357 -0.213831 0.16382 0.29795 0.44716 13 'point symmetry operation' ? ? 0.123898 0.985418 -0.11662 -0.007277 -0.11662 -0.99315 -0.992269 0.123898 -0.007277 0.00127 0.3675 0.32559 14 'point symmetry operation' ? ? 0.858438 0.147876 -0.49114 -0.367298 -0.49114 -0.789857 -0.358019 0.858438 -0.367298 0.08416 0.45972 0.15048 15 'point symmetry operation' ? ? 0.392154 -0.894702 -0.213831 -0.796357 -0.213831 -0.565768 0.46047 0.392154 -0.796357 0.29795 0.44716 0.16382 16 'point symmetry operation' ? ? 0.46047 0.392154 -0.796357 0.392154 -0.894702 -0.213831 -0.796357 -0.213831 -0.565768 0.16382 0.29795 0.44716 17 'point symmetry operation' ? ? 0.332074 -0.630565 -0.701509 -0.630565 -0.701509 0.332074 -0.701509 0.332074 -0.630565 0.34718 0.34718 0.34718 18 'point symmetry operation' ? ? -0.565768 -0.796357 -0.213831 -0.796357 0.46047 0.392154 -0.213831 0.392154 -0.894702 0.44716 0.16382 0.29795 19 'point symmetry operation' ? ? -0.992269 0.123898 -0.007277 0.123898 0.985418 -0.11662 -0.007277 -0.11662 -0.99315 0.32559 0.00127 0.3675 20 'point symmetry operation' ? ? -0.358019 0.858438 -0.367298 0.858438 0.147876 -0.49114 -0.367298 -0.49114 -0.789857 0.15048 0.08416 0.45972 21 'point symmetry operation' ? ? -0.49114 -0.789857 -0.367298 0.858438 -0.367298 -0.358019 0.147876 -0.49114 0.858438 0.45972 0.15048 0.08416 22 'point symmetry operation' ? ? -0.99315 -0.007277 -0.11662 -0.007277 -0.992269 0.123898 -0.11662 0.123898 0.985418 0.3675 0.32559 0.00127 23 'point symmetry operation' ? ? -0.498417 0.767824 -0.402527 -0.808132 -0.2434 0.536358 0.313853 0.592625 0.741817 0.1967 0.26302 -0.11254 24 'point symmetry operation' ? ? 0.309355 0.464282 -0.829905 -0.437372 0.844397 0.309355 0.844397 0.267276 0.464282 0.18336 0.04923 -0.09998 25 'point symmetry operation' ? ? 0.313853 -0.498417 -0.808132 0.592625 0.767824 -0.2434 0.741817 -0.402527 0.536358 0.34591 -0.02032 0.02159 26 'point symmetry operation' ? ? -0.007277 -0.11662 -0.99315 -0.992269 0.123898 -0.007277 0.123898 0.985418 -0.11662 0.3675 0.32559 0.00127 27 'point symmetry operation' ? ? -0.367298 -0.49114 -0.789857 -0.358019 0.858438 -0.367298 0.858438 0.147876 -0.49114 0.45972 0.15048 0.08416 28 'point symmetry operation' ? ? -0.796357 -0.213831 -0.565768 0.46047 0.392154 -0.796357 0.392154 -0.894702 -0.213831 0.44716 0.16382 0.29795 29 'point symmetry operation' ? ? -0.701509 0.332074 -0.630565 0.332074 -0.630565 -0.701509 -0.630565 -0.701509 0.332074 0.34718 0.34718 0.34718 30 'point symmetry operation' ? ? -0.213831 0.392154 -0.894702 -0.565768 -0.796357 -0.213831 -0.796357 0.46047 0.392154 0.29795 0.44716 0.16382 31 'point symmetry operation' ? ? 0.741817 0.313853 0.592625 -0.402527 -0.498417 0.767824 0.536358 -0.808132 -0.2434 -0.11254 0.1967 0.26302 32 'point symmetry operation' ? ? 0.767824 -0.2434 0.592625 -0.402527 0.536358 0.741817 -0.498417 -0.808132 0.313853 -0.02032 0.02159 0.34591 33 'point symmetry operation' ? ? 0.309355 -0.437372 0.844397 0.464282 0.844397 0.267276 -0.829905 0.309355 0.464282 0.04923 -0.09998 0.18336 34 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 35 'point symmetry operation' ? ? 0.267276 0.464282 0.844397 0.464282 -0.829905 0.309355 0.844397 0.309355 -0.437372 -0.09998 0.18336 0.04923 36 'point symmetry operation' ? ? -0.2434 0.592625 0.767824 0.536358 0.741817 -0.402527 -0.808132 0.313853 -0.498417 -0.02032 0.02159 0.34591 37 'point symmetry operation' ? ? 0.592625 0.741817 0.313853 0.767824 -0.402527 -0.498417 -0.2434 0.536358 -0.808132 -0.11254 0.1967 0.26302 38 'point symmetry operation' ? ? 0.985418 -0.11662 0.123898 -0.11662 -0.99315 -0.007277 0.123898 -0.007277 -0.992269 0.00127 0.3675 0.32559 39 'point symmetry operation' ? ? 0.392154 -0.796357 0.46047 -0.894702 -0.213831 0.392154 -0.213831 -0.565768 -0.796357 0.16382 0.29795 0.44716 40 'point symmetry operation' ? ? -0.367298 -0.358019 0.858438 -0.49114 0.858438 0.147876 -0.789857 -0.367298 -0.49114 0.15048 0.08416 0.45972 41 'point symmetry operation' ? ? -0.49114 0.858438 0.147876 -0.789857 -0.367298 -0.49114 -0.367298 -0.358019 0.858438 0.08416 0.45972 0.15048 42 'point symmetry operation' ? ? 0.536358 0.741817 -0.402527 -0.808132 0.313853 -0.498417 -0.2434 0.592625 0.767824 0.02159 0.34591 -0.02032 43 'point symmetry operation' ? ? 0.767824 -0.402527 -0.498417 -0.2434 0.536358 -0.808132 0.592625 0.741817 0.313853 0.1967 0.26302 -0.11254 44 'point symmetry operation' ? ? -0.11662 -0.99315 -0.007277 0.123898 -0.007277 -0.992269 0.985418 -0.11662 0.123898 0.3675 0.32559 0.00127 45 'point symmetry operation' ? ? -0.894702 -0.213831 0.392154 -0.213831 -0.565768 -0.796357 0.392154 -0.796357 0.46047 0.29795 0.44716 0.16382 46 'point symmetry operation' ? ? 0.741817 -0.402527 0.536358 0.313853 -0.498417 -0.808132 0.592625 0.767824 -0.2434 0.02159 0.34591 -0.02032 47 'point symmetry operation' ? ? 0.147876 -0.49114 0.858438 -0.49114 -0.789857 -0.367298 0.858438 -0.367298 -0.358019 0.08416 0.45972 0.15048 48 'point symmetry operation' ? ? -0.11662 0.123898 0.985418 -0.99315 -0.007277 -0.11662 -0.007277 -0.992269 0.123898 0.00127 0.3675 0.32559 49 'point symmetry operation' ? ? 0.313853 0.592625 0.741817 -0.498417 0.767824 -0.402527 -0.808132 -0.2434 0.536358 -0.11254 0.1967 0.26302 50 'point symmetry operation' ? ? 0.844397 0.267276 0.464282 0.309355 0.464282 -0.829905 -0.437372 0.844397 0.309355 -0.09998 0.18336 0.04923 51 'point symmetry operation' ? ? -0.2434 0.536358 -0.808132 0.592625 0.741817 0.313853 0.767824 -0.402527 -0.498417 0.26302 -0.11254 0.1967 52 'point symmetry operation' ? ? 0.123898 -0.007277 -0.992269 0.985418 -0.11662 0.123898 -0.11662 -0.99315 -0.007277 0.32559 0.00127 0.3675 53 'point symmetry operation' ? ? -0.213831 -0.565768 -0.796357 0.392154 -0.796357 0.46047 -0.894702 -0.213831 0.392154 0.44716 0.16382 0.29795 54 'point symmetry operation' ? ? -0.789857 -0.367298 -0.49114 -0.367298 -0.358019 0.858438 -0.49114 0.858438 0.147876 0.45972 0.15048 0.08416 55 'point symmetry operation' ? ? -0.808132 0.313853 -0.498417 -0.2434 0.592625 0.767824 0.536358 0.741817 -0.402527 0.34591 -0.02032 0.02159 56 'point symmetry operation' ? ? -0.007277 -0.992269 0.123898 -0.11662 0.123898 0.985418 -0.99315 -0.007277 -0.11662 0.32559 0.00127 0.3675 57 'point symmetry operation' ? ? -0.808132 -0.2434 0.536358 0.313853 0.592625 0.741817 -0.498417 0.767824 -0.402527 0.26302 -0.11254 0.1967 58 'point symmetry operation' ? ? -0.437372 0.844397 0.309355 0.844397 0.267276 0.464282 0.309355 0.464282 -0.829905 0.04923 -0.09998 0.18336 59 'point symmetry operation' ? ? 0.592625 0.767824 -0.2434 0.741817 -0.402527 0.536358 0.313853 -0.498417 -0.808132 -0.02032 0.02159 0.34591 60 'point symmetry operation' ? ? 0.858438 -0.367298 -0.358019 0.147876 -0.49114 0.858438 -0.49114 -0.789857 -0.367298 0.15048 0.08416 0.45972 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H26 Cl2 N2 O6' _chem_comp.formula_weight 473.347 _chem_comp.id W42 _chem_comp.mon_nstd_flag . _chem_comp.name '5-(5-(2,6-DICHLORO-4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)PENTYL)-3-(HYDROXYETHYL OXYMETHYLENEOXYMETHYL) ISOXAZOLE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'COMPOUND WIN VIII' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1D C2D W42 sing 374 n n O1D HOD1 W42 sing 375 n n C2D C3D W42 sing 376 n n C2D H2D1 W42 sing 377 n n C2D H2D2 W42 sing 378 n n C3D O4D W42 sing 379 n n C3D H3D1 W42 sing 380 n n C3D H3D2 W42 sing 381 n n O4D C5D W42 sing 382 n n C5D O6D W42 sing 383 n n C5D H5D1 W42 sing 384 n n C5D H5D2 W42 sing 385 n n O6D C31 W42 sing 386 n n O1 N2 W42 sing 387 n y O1 C5 W42 sing 388 n y N2 C3 W42 doub 389 n y C3 C31 W42 sing 390 n n C3 C4 W42 sing 391 n y C31 H311 W42 sing 392 n n C31 H312 W42 sing 393 n n C4 C5 W42 doub 394 n y C4 H4 W42 sing 395 n n C5 C1C W42 sing 396 n n C1C C2C W42 sing 397 n n C1C H1C1 W42 sing 398 n n C1C H1C2 W42 sing 399 n n C2C C3C W42 sing 400 n n C2C H2C1 W42 sing 401 n n C2C H2C2 W42 sing 402 n n C3C C4C W42 sing 403 n n C3C H3C1 W42 sing 404 n n C3C H3C2 W42 sing 405 n n C4C C5C W42 sing 406 n n C4C H4C1 W42 sing 407 n n C4C H4C2 W42 sing 408 n n C5C O1B W42 sing 409 n n C5C H5C1 W42 sing 410 n n C5C H5C2 W42 sing 411 n n O1B C1B W42 sing 412 n n C1B C2B W42 doub 413 n y C1B C6B W42 sing 414 n y C2B C3B W42 sing 415 n y C2B CL2 W42 sing 416 n n C3B C4B W42 doub 417 n y C3B H3B W42 sing 418 n n C4B C5B W42 sing 419 n y C4B C2A W42 sing 420 n n C5B C6B W42 doub 421 n y C5B H5B W42 sing 422 n n C6B CL1 W42 sing 423 n n C2A N3A W42 doub 424 n n C2A O1A W42 sing 425 n n N3A C4A W42 sing 426 n n C4A C5A W42 sing 427 n n C4A H4A1 W42 sing 428 n n C4A H4A2 W42 sing 429 n n C5A O1A W42 sing 430 n n C5A H5A1 W42 sing 431 n n C5A H5A2 W42 sing 432 n n # _atom_sites.entry_id 1R08 _atom_sites.fract_transf_matrix[1][1] 0.002247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id W42 _pdbx_nonpoly_scheme.pdb_strand_id 1 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 900 _pdbx_nonpoly_scheme.auth_seq_num 900 _pdbx_nonpoly_scheme.pdb_mon_id W42 _pdbx_nonpoly_scheme.auth_mon_id W42 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1D W42 . . . E 5 29.69 15.841 130.093 1 1 ? O1D W42 900 1 1 HETATM 2 C C2D W42 . . . E 5 30.48 16.064 128.871 1 1 ? C2D W42 900 1 1 HETATM 3 C C3D W42 . . . E 5 29.831 15.673 127.532 1 1 ? C3D W42 900 1 1 HETATM 4 O O4D W42 . . . E 5 28.738 14.735 127.569 1 1 ? O4D W42 900 1 1 HETATM 5 C C5D W42 . . . E 5 28.662 13.707 126.592 1 1 ? C5D W42 900 1 1 HETATM 6 O O6D W42 . . . E 5 29.128 12.389 126.868 1 1 ? O6D W42 900 1 1 HETATM 7 O O1 W42 . . . E 5 31.374 8.789 127.904 1 1 ? O1 W42 900 1 1 HETATM 8 N N2 W42 . . . E 5 30.518 9.885 128.169 1 1 ? N2 W42 900 1 1 HETATM 9 C C3 W42 . . . E 5 31.006 10.88 127.512 1 1 ? C3 W42 900 1 1 HETATM 10 C C31 W42 . . . E 5 30.335 12.202 127.587 1 1 ? C31 W42 900 1 1 HETATM 11 C C4 W42 . . . E 5 32.154 10.516 126.807 1 1 ? C4 W42 900 1 1 HETATM 12 C C5 W42 . . . E 5 32.349 9.221 127.072 1 1 ? C5 W42 900 1 1 HETATM 13 C C1C W42 . . . E 5 33.332 8.176 126.677 1 1 ? C1C W42 900 1 1 HETATM 14 C C2C W42 . . . E 5 32.622 6.817 126.569 1 1 ? C2C W42 900 1 1 HETATM 15 C C3C W42 . . . E 5 33.598 5.646 126.658 1 1 ? C3C W42 900 1 1 HETATM 16 C C4C W42 . . . E 5 34.619 5.685 125.555 1 1 ? C4C W42 900 1 1 HETATM 17 C C5C W42 . . . E 5 34.805 4.345 124.854 1 1 ? C5C W42 900 1 1 HETATM 18 O O1B W42 . . . E 5 35.47 3.547 125.782 1 1 ? O1B W42 900 1 1 HETATM 19 C C1B W42 . . . E 5 36.661 2.935 125.613 1 1 ? C1B W42 900 1 1 HETATM 20 C C2B W42 . . . E 5 37.781 3.445 126.225 1 1 ? C2B W42 900 1 1 HETATM 21 C C3B W42 . . . E 5 38.988 2.796 126.086 1 1 ? C3B W42 900 1 1 HETATM 22 C C4B W42 . . . E 5 39.085 1.633 125.318 1 1 ? C4B W42 900 1 1 HETATM 23 C C5B W42 . . . E 5 37.937 1.121 124.703 1 1 ? C5B W42 900 1 1 HETATM 24 C C6B W42 . . . E 5 36.74 1.777 124.85 1 1 ? C6B W42 900 1 1 HETATM 25 CL CL1 W42 . . . E 5 35.331 1.183 124.091 1 1 ? CL1 W42 900 1 1 HETATM 26 CL CL2 W42 . . . E 5 37.713 4.871 127.158 1 1 ? CL2 W42 900 1 1 HETATM 27 C C2A W42 . . . E 5 40.347 0.912 125.211 1 1 ? C2A W42 900 1 1 HETATM 28 N N3A W42 . . . E 5 40.561 -0.321 124.522 1 1 ? N3A W42 900 1 1 HETATM 29 C C4A W42 . . . E 5 41.835 -0.779 124.639 1 1 ? C4A W42 900 1 1 HETATM 30 C C5A W42 . . . E 5 42.391 0.304 125.539 1 1 ? C5A W42 900 1 1 HETATM 31 O O1A W42 . . . E 5 41.44 1.258 125.856 1 1 ? O1A W42 900 1 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #