data_1R0L # _model_server_result.job_id 7CPHwVL5E3UNiEX0YK0RVw _model_server_result.datetime_utc '2024-11-26 01:54:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 1R0L # _exptl.entry_id 1R0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.5 _cell.angle_gamma 90 _cell.entry_id 1R0L _cell.length_a 87.7 _cell.length_b 93.2 _cell.length_c 98.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 1R0L _atom_sites.fract_transf_matrix[1][1] 0.011403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 400 400 NDP NDP . F 2 NDP B 1 401 401 NDP NDP . G 2 NDP C 1 402 402 NDP NDP . H 2 NDP D 1 403 403 NDP NDP . I 3 HOH A 1 401 2 HOH HOH . I 3 HOH A 2 402 5 HOH HOH . I 3 HOH A 3 403 7 HOH HOH . I 3 HOH A 4 404 11 HOH HOH . I 3 HOH A 5 405 15 HOH HOH . I 3 HOH A 6 406 17 HOH HOH . I 3 HOH A 7 407 18 HOH HOH . I 3 HOH A 8 408 22 HOH HOH . I 3 HOH A 9 409 24 HOH HOH . I 3 HOH A 10 410 27 HOH HOH . I 3 HOH A 11 411 28 HOH HOH . I 3 HOH A 12 412 31 HOH HOH . I 3 HOH A 13 413 40 HOH HOH . I 3 HOH A 14 414 43 HOH HOH . I 3 HOH A 15 415 47 HOH HOH . I 3 HOH A 16 416 52 HOH HOH . I 3 HOH A 17 417 53 HOH HOH . I 3 HOH A 18 418 59 HOH HOH . I 3 HOH A 19 419 61 HOH HOH . I 3 HOH A 20 420 62 HOH HOH . I 3 HOH A 21 421 64 HOH HOH . I 3 HOH A 22 422 66 HOH HOH . I 3 HOH A 23 423 84 HOH HOH . I 3 HOH A 24 424 90 HOH HOH . I 3 HOH A 25 425 94 HOH HOH . I 3 HOH A 26 426 100 HOH HOH . I 3 HOH A 27 427 103 HOH HOH . I 3 HOH A 28 428 107 HOH HOH . I 3 HOH A 29 429 109 HOH HOH . I 3 HOH A 30 430 119 HOH HOH . J 3 HOH B 1 402 1 HOH HOH . J 3 HOH B 2 403 8 HOH HOH . J 3 HOH B 3 404 9 HOH HOH . J 3 HOH B 4 405 10 HOH HOH . J 3 HOH B 5 406 12 HOH HOH . J 3 HOH B 6 407 21 HOH HOH . J 3 HOH B 7 408 23 HOH HOH . J 3 HOH B 8 409 29 HOH HOH . J 3 HOH B 9 410 30 HOH HOH . J 3 HOH B 10 411 32 HOH HOH . J 3 HOH B 11 412 33 HOH HOH . J 3 HOH B 12 413 35 HOH HOH . J 3 HOH B 13 414 44 HOH HOH . J 3 HOH B 14 415 46 HOH HOH . J 3 HOH B 15 416 48 HOH HOH . J 3 HOH B 16 417 60 HOH HOH . J 3 HOH B 17 418 65 HOH HOH . J 3 HOH B 18 419 70 HOH HOH . J 3 HOH B 19 420 75 HOH HOH . J 3 HOH B 20 421 77 HOH HOH . J 3 HOH B 21 422 78 HOH HOH . J 3 HOH B 22 423 79 HOH HOH . J 3 HOH B 23 424 80 HOH HOH . J 3 HOH B 24 425 86 HOH HOH . J 3 HOH B 25 426 88 HOH HOH . J 3 HOH B 26 427 89 HOH HOH . J 3 HOH B 27 428 93 HOH HOH . J 3 HOH B 28 429 95 HOH HOH . J 3 HOH B 29 430 97 HOH HOH . J 3 HOH B 30 431 102 HOH HOH . J 3 HOH B 31 432 104 HOH HOH . J 3 HOH B 32 433 106 HOH HOH . J 3 HOH B 33 434 108 HOH HOH . J 3 HOH B 34 435 113 HOH HOH . J 3 HOH B 35 436 115 HOH HOH . J 3 HOH B 36 437 117 HOH HOH . K 3 HOH C 1 403 4 HOH HOH . K 3 HOH C 2 404 6 HOH HOH . K 3 HOH C 3 405 13 HOH HOH . K 3 HOH C 4 406 14 HOH HOH . K 3 HOH C 5 407 16 HOH HOH . K 3 HOH C 6 408 38 HOH HOH . K 3 HOH C 7 409 41 HOH HOH . K 3 HOH C 8 410 45 HOH HOH . K 3 HOH C 9 411 50 HOH HOH . K 3 HOH C 10 412 58 HOH HOH . K 3 HOH C 11 413 63 HOH HOH . K 3 HOH C 12 414 68 HOH HOH . K 3 HOH C 13 415 72 HOH HOH . K 3 HOH C 14 416 76 HOH HOH . K 3 HOH C 15 417 82 HOH HOH . K 3 HOH C 16 418 83 HOH HOH . K 3 HOH C 17 419 92 HOH HOH . K 3 HOH C 18 420 96 HOH HOH . K 3 HOH C 19 421 99 HOH HOH . K 3 HOH C 20 422 101 HOH HOH . K 3 HOH C 21 423 105 HOH HOH . K 3 HOH C 22 424 118 HOH HOH . L 3 HOH D 1 404 3 HOH HOH . L 3 HOH D 2 405 19 HOH HOH . L 3 HOH D 3 406 20 HOH HOH . L 3 HOH D 4 407 26 HOH HOH . L 3 HOH D 5 408 34 HOH HOH . L 3 HOH D 6 409 37 HOH HOH . L 3 HOH D 7 410 39 HOH HOH . L 3 HOH D 8 411 42 HOH HOH . L 3 HOH D 9 412 49 HOH HOH . L 3 HOH D 10 413 54 HOH HOH . L 3 HOH D 11 414 56 HOH HOH . L 3 HOH D 12 415 57 HOH HOH . L 3 HOH D 13 416 71 HOH HOH . L 3 HOH D 14 417 73 HOH HOH . L 3 HOH D 15 418 81 HOH HOH . L 3 HOH D 16 419 87 HOH HOH . L 3 HOH D 17 420 110 HOH HOH . L 3 HOH D 18 421 112 HOH HOH . L 3 HOH D 19 422 114 HOH HOH . L 3 HOH D 20 423 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 2 -13.74 10.176 30.612 1 75.19 ? PA NDP 403 D 1 HETATM 2 O O1A NDP . . . H 2 -13.005 9.899 29.408 1 76.76 ? O1A NDP 403 D 1 HETATM 3 O O2A NDP . . . H 2 -15.12 10.833 30.767 1 74.17 ? O2A NDP 403 D 1 HETATM 4 O O5B NDP . . . H 2 -13.508 8.555 31.098 1 70.48 ? O5B NDP 403 D 1 HETATM 5 C C5B NDP . . . H 2 -14.048 8.717 32.093 1 65.37 ? C5B NDP 403 D 1 HETATM 6 C C4B NDP . . . H 2 -14.13 7.743 32.995 1 59.22 ? C4B NDP 403 D 1 HETATM 7 O O4B NDP . . . H 2 -14.793 8.297 34.241 1 57.37 ? O4B NDP 403 D 1 HETATM 8 C C3B NDP . . . H 2 -14.855 6.703 32.559 1 57.17 ? C3B NDP 403 D 1 HETATM 9 O O3B NDP . . . H 2 -14.226 5.525 33.246 1 56.99 ? O3B NDP 403 D 1 HETATM 10 C C2B NDP . . . H 2 -16.311 6.962 32.995 1 56.59 ? C2B NDP 403 D 1 HETATM 11 O O2B NDP . . . H 2 -17.157 5.841 32.831 1 56.85 ? O2B NDP 403 D 1 HETATM 12 C C1B NDP . . . H 2 -16.04 7.415 34.383 1 55.91 ? C1B NDP 403 D 1 HETATM 13 N N9A NDP . . . H 2 -17.211 8.192 34.762 1 54.89 ? N9A NDP 403 D 1 HETATM 14 C C8A NDP . . . H 2 -17.652 9.219 33.944 1 53.21 ? C8A NDP 403 D 1 HETATM 15 N N7A NDP . . . H 2 -18.623 9.819 34.41 1 52.08 ? N7A NDP 403 D 1 HETATM 16 C C5A NDP . . . H 2 -18.924 9.226 35.622 1 51.92 ? C5A NDP 403 D 1 HETATM 17 C C6A NDP . . . H 2 -19.898 9.516 36.594 1 52.17 ? C6A NDP 403 D 1 HETATM 18 N N6A NDP . . . H 2 -20.742 10.558 36.459 1 52.01 ? N6A NDP 403 D 1 HETATM 19 N N1A NDP . . . H 2 -19.949 8.743 37.713 1 52.57 ? N1A NDP 403 D 1 HETATM 20 C C2A NDP . . . H 2 -19.07 7.698 37.859 1 52.9 ? C2A NDP 403 D 1 HETATM 21 N N3A NDP . . . H 2 -18.099 7.391 36.937 1 51.89 ? N3A NDP 403 D 1 HETATM 22 C C4A NDP . . . H 2 -18.088 8.181 35.862 1 52.27 ? C4A NDP 403 D 1 HETATM 23 O O3 NDP . . . H 2 -13.68 11.353 31.682 1 78.5 ? O3 NDP 403 D 1 HETATM 24 P P2B NDP . . . H 2 -17.552 5.259 31.412 1 56.93 ? P2B NDP 403 D 1 HETATM 25 O O1X NDP . . . H 2 -18.983 5.211 31.106 1 56.51 ? O1X NDP 403 D 1 HETATM 26 O O2X NDP . . . H 2 -16.519 4.488 30.664 1 54.93 ? O2X NDP 403 D 1 HETATM 27 O O3X NDP . . . H 2 -17.856 3.906 32.141 1 55.83 ? O3X NDP 403 D 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 27 #