data_1R10 # _model_server_result.job_id N7isgZuBqHW9sBEOY7iEiA _model_server_result.datetime_utc '2024-11-26 09:00:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2}' # _entry.id 1R10 # _exptl.entry_id 1R10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R10 _cell.length_a 141.2 _cell.length_b 141.2 _cell.length_c 279.46 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I 2 1 A,B,C,D,E,F,G,H,I 3 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_667 -y+1,-x+1,-z+2 0 -1 0 -1 0 0 0 0 -1 141.2 141.2 558.92 3 'crystal symmetry operation' 10_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 282.4 0 0 4 'crystal symmetry operation' 15_647 y+1,x-1,-z+2 0 1 0 1 0 0 0 0 -1 141.2 -141.2 558.92 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2G ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc2 D O2B ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc3 C MG MG . A MG 3 1_555 A OG1 THR 78 A THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc4 C MG MG . A MG 3 1_555 A OE1 GLN 106 A GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? metalc ? metalc5 H O2G ATP . B ATP 2 1_555 G MG MG . B MG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc6 H O2B ATP . B ATP 2 1_555 G MG MG . B MG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc7 G MG MG . B MG 4 1_555 B OG1 THR 78 B THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc8 G MG MG . B MG 4 1_555 B OE1 GLN 106 B GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 77 n n PG O2G ATP sing 78 n n PG O3G ATP sing 79 n n PG O3B ATP sing 80 n n O2G HOG2 ATP sing 81 n n O3G HOG3 ATP sing 82 n n PB O1B ATP doub 83 n n PB O2B ATP sing 84 n n PB O3B ATP sing 85 n n PB O3A ATP sing 86 n n O2B HOB2 ATP sing 87 n n PA O1A ATP doub 88 n n PA O2A ATP sing 89 n n PA O3A ATP sing 90 n n PA O5' ATP sing 91 n n O2A HOA2 ATP sing 92 n n O5' C5' ATP sing 93 n n C5' C4' ATP sing 94 n n C5' "H5'1" ATP sing 95 n n C5' "H5'2" ATP sing 96 n n C4' O4' ATP sing 97 n n C4' C3' ATP sing 98 n n C4' H4' ATP sing 99 n n O4' C1' ATP sing 100 n n C3' O3' ATP sing 101 n n C3' C2' ATP sing 102 n n C3' H3' ATP sing 103 n n O3' HO3' ATP sing 104 n n C2' O2' ATP sing 105 n n C2' C1' ATP sing 106 n n C2' H2' ATP sing 107 n n O2' HO2' ATP sing 108 n n C1' N9 ATP sing 109 n n C1' H1' ATP sing 110 n n N9 C8 ATP sing 111 n y N9 C4 ATP sing 112 n y C8 N7 ATP doub 113 n y C8 H8 ATP sing 114 n n N7 C5 ATP sing 115 n y C5 C6 ATP sing 116 n y C5 C4 ATP doub 117 n y C6 N6 ATP sing 118 n n C6 N1 ATP doub 119 n y N6 HN61 ATP sing 120 n n N6 HN62 ATP sing 121 n n N1 C2 ATP sing 122 n y C2 N3 ATP doub 123 n y C2 H2 ATP sing 124 n n N3 C4 ATP sing 125 n y # _atom_sites.entry_id 1R10 _atom_sites.fract_transf_matrix[1][1] 0.007082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 3 3 MG MG . D 3 ATP A 1 1 1 ATP ATP . E 4 ACY A 1 7 7 ACY ACY . F 4 ACY A 1 9 9 ACY ACY . G 2 MG B 1 4 4 MG MG . H 3 ATP B 1 2 2 ATP ATP . I 4 ACY B 1 8 8 ACY ACY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 3 132.726 26.938 282.956 1 82.82 ? PG ATP 2 B 1 HETATM 2 O O1G ATP . . . H 3 131.245 27.21 283.166 1 82.82 ? O1G ATP 2 B 1 HETATM 3 O O2G ATP . . . H 3 133.516 26.881 284.257 1 82.82 ? O2G ATP 2 B 1 HETATM 4 O O3G ATP . . . H 3 132.969 25.701 282.104 1 82.82 ? O3G ATP 2 B 1 HETATM 5 P PB ATP . . . H 3 134.657 29.159 282.436 1 82.82 ? PB ATP 2 B 1 HETATM 6 O O1B ATP . . . H 3 134.739 30.422 281.736 1 82.82 ? O1B ATP 2 B 1 HETATM 7 O O2B ATP . . . H 3 135.516 28.885 283.6 1 82.82 ? O2B ATP 2 B 1 HETATM 8 O O3B ATP . . . H 3 133.386 28.22 282.127 1 82.82 ? O3B ATP 2 B 1 HETATM 9 P PA ATP . . . H 3 137.145 28.409 281.295 1 82.82 ? PA ATP 2 B 1 HETATM 10 O O1A ATP . . . H 3 137.654 27.113 281.685 1 82.82 ? O1A ATP 2 B 1 HETATM 11 O O2A ATP . . . H 3 138.01 29.634 281.166 1 82.82 ? O2A ATP 2 B 1 HETATM 12 O O3A ATP . . . H 3 135.584 28.552 281.171 1 82.82 ? O3A ATP 2 B 1 HETATM 13 O O5' ATP . . . H 3 137.416 27.925 279.928 1 82.82 ? O5' ATP 2 B 1 HETATM 14 C C5' ATP . . . H 3 137.473 27.966 278.688 1 82.82 ? C5' ATP 2 B 1 HETATM 15 C C4' ATP . . . H 3 138.238 27.991 277.405 1 82.82 ? C4' ATP 2 B 1 HETATM 16 O O4' ATP . . . H 3 138.887 26.652 277.383 1 82.82 ? O4' ATP 2 B 1 HETATM 17 C C3' ATP . . . H 3 137.016 28.016 276.535 1 82.82 ? C3' ATP 2 B 1 HETATM 18 O O3' ATP . . . H 3 137.23 28.559 275.206 1 82.82 ? O3' ATP 2 B 1 HETATM 19 C C2' ATP . . . H 3 136.542 26.494 276.673 1 82.82 ? C2' ATP 2 B 1 HETATM 20 O O2' ATP . . . H 3 135.735 26.064 275.581 1 82.82 ? O2' ATP 2 B 1 HETATM 21 C C1' ATP . . . H 3 137.892 25.661 276.857 1 82.82 ? C1' ATP 2 B 1 HETATM 22 N N9 ATP . . . H 3 137.832 24.527 277.816 1 82.82 ? N9 ATP 2 B 1 HETATM 23 C C8 ATP . . . H 3 137.866 24.495 279.247 1 82.82 ? C8 ATP 2 B 1 HETATM 24 N N7 ATP . . . H 3 137.789 23.311 279.763 1 82.82 ? N7 ATP 2 B 1 HETATM 25 C C5 ATP . . . H 3 137.685 22.478 278.62 1 82.82 ? C5 ATP 2 B 1 HETATM 26 C C6 ATP . . . H 3 137.559 21.049 278.449 1 82.82 ? C6 ATP 2 B 1 HETATM 27 N N6 ATP . . . H 3 137.508 20.221 279.505 1 82.82 ? N6 ATP 2 B 1 HETATM 28 N N1 ATP . . . H 3 137.474 20.526 277.15 1 82.82 ? N1 ATP 2 B 1 HETATM 29 C C2 ATP . . . H 3 137.514 21.361 276.055 1 82.82 ? C2 ATP 2 B 1 HETATM 30 N N3 ATP . . . H 3 137.633 22.73 276.074 1 82.82 ? N3 ATP 2 B 1 HETATM 31 C C4 ATP . . . H 3 137.712 23.225 277.439 1 82.82 ? C4 ATP 2 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #