data_1R13 # _model_server_result.job_id x5tIorz9loQq0eJo1wjNng _model_server_result.datetime_utc '2024-11-28 15:14:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1R13 # _exptl.entry_id 1R13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R13 _cell.length_a 97.68 _cell.length_b 97.68 _cell.length_c 44.54 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 97.68 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.84 84.593361 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 135 1_555 A SG CYS 146 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 124 A CYS 204 1_555 A SG CYS 138 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OE1 GLU 115 A GLU 195 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc2 A O ARG 117 A ARG 197 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc3 A OD1 ASN 134 A ASN 214 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc4 A O ASP 135 A ASP 215 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc5 A OD1 ASP 135 A ASP 215 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 B CA CA . A CA 300 1_555 E O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc7 B CA CA . A CA 300 1_555 E O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1R13 _atom_sites.fract_transf_matrix[1][1] 0.010238 _atom_sites.fract_transf_matrix[1][2] 0.005911 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 300 300 CA CA . C 3 SO4 A 1 350 350 SO4 SO4 . D 4 MES A 1 700 700 MES MES . E 5 HOH A 1 401 401 HOH HOH . E 5 HOH A 2 402 402 HOH HOH . E 5 HOH A 3 403 403 HOH HOH . E 5 HOH A 4 405 405 HOH HOH . E 5 HOH A 5 406 406 HOH HOH . E 5 HOH A 6 407 407 HOH HOH . E 5 HOH A 7 408 408 HOH HOH . E 5 HOH A 8 409 409 HOH HOH . E 5 HOH A 9 410 410 HOH HOH . E 5 HOH A 10 411 411 HOH HOH . E 5 HOH A 11 412 412 HOH HOH . E 5 HOH A 12 413 413 HOH HOH . E 5 HOH A 13 414 414 HOH HOH . E 5 HOH A 14 415 415 HOH HOH . E 5 HOH A 15 416 416 HOH HOH . E 5 HOH A 16 417 417 HOH HOH . E 5 HOH A 17 418 418 HOH HOH . E 5 HOH A 18 419 419 HOH HOH . E 5 HOH A 19 420 420 HOH HOH . E 5 HOH A 20 421 421 HOH HOH . E 5 HOH A 21 422 422 HOH HOH . E 5 HOH A 22 423 423 HOH HOH . E 5 HOH A 23 424 424 HOH HOH . E 5 HOH A 24 425 425 HOH HOH . E 5 HOH A 25 426 426 HOH HOH . E 5 HOH A 26 427 427 HOH HOH . E 5 HOH A 27 428 428 HOH HOH . E 5 HOH A 28 429 429 HOH HOH . E 5 HOH A 29 430 430 HOH HOH . E 5 HOH A 30 431 431 HOH HOH . E 5 HOH A 31 432 432 HOH HOH . E 5 HOH A 32 433 433 HOH HOH . E 5 HOH A 33 434 434 HOH HOH . E 5 HOH A 34 435 435 HOH HOH . E 5 HOH A 35 436 436 HOH HOH . E 5 HOH A 36 437 437 HOH HOH . E 5 HOH A 37 438 438 HOH HOH . E 5 HOH A 38 439 439 HOH HOH . E 5 HOH A 39 440 440 HOH HOH . E 5 HOH A 40 441 441 HOH HOH . E 5 HOH A 41 442 442 HOH HOH . E 5 HOH A 42 443 443 HOH HOH . E 5 HOH A 43 444 444 HOH HOH . E 5 HOH A 44 445 445 HOH HOH . E 5 HOH A 45 446 446 HOH HOH . E 5 HOH A 46 447 447 HOH HOH . E 5 HOH A 47 448 448 HOH HOH . E 5 HOH A 48 449 449 HOH HOH . E 5 HOH A 49 450 450 HOH HOH . E 5 HOH A 50 451 451 HOH HOH . E 5 HOH A 51 452 452 HOH HOH . E 5 HOH A 52 453 453 HOH HOH . E 5 HOH A 53 454 454 HOH HOH . E 5 HOH A 54 455 455 HOH HOH . E 5 HOH A 55 456 456 HOH HOH . E 5 HOH A 56 457 457 HOH HOH . E 5 HOH A 57 458 458 HOH HOH . E 5 HOH A 58 459 459 HOH HOH . E 5 HOH A 59 460 460 HOH HOH . E 5 HOH A 60 461 461 HOH HOH . E 5 HOH A 61 462 462 HOH HOH . E 5 HOH A 62 463 463 HOH HOH . E 5 HOH A 63 464 464 HOH HOH . E 5 HOH A 64 465 465 HOH HOH . E 5 HOH A 65 466 466 HOH HOH . E 5 HOH A 66 467 467 HOH HOH . E 5 HOH A 67 468 468 HOH HOH . E 5 HOH A 68 470 470 HOH HOH . E 5 HOH A 69 471 471 HOH HOH . E 5 HOH A 70 472 472 HOH HOH . E 5 HOH A 71 473 473 HOH HOH . E 5 HOH A 72 474 474 HOH HOH . E 5 HOH A 73 475 475 HOH HOH . E 5 HOH A 74 476 476 HOH HOH . E 5 HOH A 75 477 477 HOH HOH . E 5 HOH A 76 478 478 HOH HOH . E 5 HOH A 77 479 479 HOH HOH . E 5 HOH A 78 480 480 HOH HOH . E 5 HOH A 79 481 481 HOH HOH . E 5 HOH A 80 482 482 HOH HOH . E 5 HOH A 81 483 483 HOH HOH . E 5 HOH A 82 484 484 HOH HOH . E 5 HOH A 83 485 485 HOH HOH . E 5 HOH A 84 486 486 HOH HOH . E 5 HOH A 85 487 487 HOH HOH . E 5 HOH A 86 488 488 HOH HOH . E 5 HOH A 87 489 489 HOH HOH . E 5 HOH A 88 491 491 HOH HOH . E 5 HOH A 89 492 492 HOH HOH . E 5 HOH A 90 493 493 HOH HOH . E 5 HOH A 91 494 494 HOH HOH . E 5 HOH A 92 495 495 HOH HOH . E 5 HOH A 93 496 496 HOH HOH . E 5 HOH A 94 497 497 HOH HOH . E 5 HOH A 95 498 498 HOH HOH . E 5 HOH A 96 499 499 HOH HOH . E 5 HOH A 97 500 500 HOH HOH . E 5 HOH A 98 501 501 HOH HOH . E 5 HOH A 99 502 502 HOH HOH . E 5 HOH A 100 503 503 HOH HOH . E 5 HOH A 101 504 504 HOH HOH . E 5 HOH A 102 505 505 HOH HOH . E 5 HOH A 103 506 506 HOH HOH . E 5 HOH A 104 507 507 HOH HOH . E 5 HOH A 105 508 508 HOH HOH . E 5 HOH A 106 509 509 HOH HOH . E 5 HOH A 107 510 510 HOH HOH . E 5 HOH A 108 511 511 HOH HOH . E 5 HOH A 109 512 512 HOH HOH . E 5 HOH A 110 513 513 HOH HOH . E 5 HOH A 111 514 514 HOH HOH . E 5 HOH A 112 515 515 HOH HOH . E 5 HOH A 113 516 516 HOH HOH . E 5 HOH A 114 517 517 HOH HOH . E 5 HOH A 115 518 518 HOH HOH . E 5 HOH A 116 519 519 HOH HOH . E 5 HOH A 117 520 520 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 82.877 _atom_site.Cartn_y 36.537 _atom_site.Cartn_z 46.613 _atom_site.occupancy 0.92 _atom_site.B_iso_or_equiv 29.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #