data_1R15 # _model_server_result.job_id s8RDsjLmfMxd1gfSl-oIXw _model_server_result.datetime_utc '2024-11-04 22:37:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":419}' # _entry.id 1R15 # _exptl.entry_id 1R15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.125 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment nicotinamide _entity.pdbx_ec ? # _cell.angle_alpha 88.16 _cell.angle_beta 89.22 _cell.angle_gamma 89.09 _cell.entry_id 1R15 _cell.length_a 60.4 _cell.length_b 75.32 _cell.length_c 138.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N 1 1 C,D,O,P,Q,R,S,T 2 1 E,F,U,V,W,X,Y,Z 3 1 G,H,AA,BA,CA,DA,EA,FA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 M N N ? 3 N N N ? 3 P N N ? 3 Q N N ? 3 S N N ? 3 T N N ? 3 V N N ? 3 W N N ? 3 Y N N ? 3 Z N N ? 3 BA N N ? 3 CA N N ? 3 EA N N ? 3 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 A SG CYS 34 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 51 A CYS 51 1_555 A SG CYS 131 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 112 A CYS 112 1_555 A SG CYS 125 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 A SG CYS 206 A CYS 206 1_555 A SG CYS 227 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 A SG CYS 239 A CYS 239 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 15 B CYS 15 1_555 B SG CYS 34 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf7 B SG CYS 51 B CYS 51 1_555 B SG CYS 131 B CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf8 B SG CYS 112 B CYS 112 1_555 B SG CYS 125 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf9 B SG CYS 206 B CYS 206 1_555 B SG CYS 227 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf10 B SG CYS 239 B CYS 239 1_555 B SG CYS 248 B CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 C SG CYS 15 C CYS 15 1_555 C SG CYS 34 C CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf12 C SG CYS 51 C CYS 51 1_555 C SG CYS 131 C CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 C SG CYS 112 C CYS 112 1_555 C SG CYS 125 C CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf14 C SG CYS 206 C CYS 206 1_555 C SG CYS 227 C CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf15 C SG CYS 239 C CYS 239 1_555 C SG CYS 248 C CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf16 D SG CYS 15 D CYS 15 1_555 D SG CYS 34 D CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf17 D SG CYS 51 D CYS 51 1_555 D SG CYS 131 D CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf18 D SG CYS 112 D CYS 112 1_555 D SG CYS 125 D CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf19 D SG CYS 206 D CYS 206 1_555 D SG CYS 227 D CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf20 D SG CYS 239 D CYS 239 1_555 D SG CYS 248 D CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 E SG CYS 15 E CYS 15 1_555 E SG CYS 34 E CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf22 E SG CYS 51 E CYS 51 1_555 E SG CYS 131 E CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf23 E SG CYS 112 E CYS 112 1_555 E SG CYS 125 E CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf24 E SG CYS 206 E CYS 206 1_555 E SG CYS 227 E CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf25 E SG CYS 239 E CYS 239 1_555 E SG CYS 248 E CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf26 F SG CYS 15 F CYS 15 1_555 F SG CYS 34 F CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf27 F SG CYS 51 F CYS 51 1_555 F SG CYS 131 F CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf28 F SG CYS 112 F CYS 112 1_555 F SG CYS 125 F CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf29 F SG CYS 206 F CYS 206 1_555 F SG CYS 227 F CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf30 F SG CYS 239 F CYS 239 1_555 F SG CYS 248 F CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf31 G SG CYS 15 G CYS 15 1_555 G SG CYS 34 G CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf32 G SG CYS 51 G CYS 51 1_555 G SG CYS 131 G CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf33 G SG CYS 112 G CYS 112 1_555 G SG CYS 125 G CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf34 G SG CYS 206 G CYS 206 1_555 G SG CYS 227 G CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf35 G SG CYS 239 G CYS 239 1_555 G SG CYS 248 G CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf36 H SG CYS 15 H CYS 15 1_555 H SG CYS 34 H CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf37 H SG CYS 51 H CYS 51 1_555 H SG CYS 131 H CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf38 H SG CYS 112 H CYS 112 1_555 H SG CYS 125 H CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf39 H SG CYS 206 H CYS 206 1_555 H SG CYS 227 H CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf40 H SG CYS 239 H CYS 239 1_555 H SG CYS 248 H CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A OE2 GLU 179 A GLU 179 1_555 I C3' N . A N 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.525 ? covale ? covale2 B OE2 GLU 179 B GLU 179 1_555 L C3' N . B N 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale3 C OE2 GLU 179 C GLU 179 1_555 O C3' N . C N 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale4 D OE2 GLU 179 D GLU 179 1_555 R C3' N . D N 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale5 E OE2 GLU 179 E GLU 179 1_555 U C3' N . E N 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? covale ? covale6 F OE2 GLU 179 F GLU 179 1_555 X C3' N . F N 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale7 G OE2 GLU 179 G GLU 179 1_555 AA C3' N . G N 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.534 ? covale ? covale8 H OE2 GLU 179 H GLU 179 1_555 DA C3' N . H N 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? # _chem_comp.formula 'C6 H6 N2 O' _chem_comp.formula_weight 122.125 _chem_comp.id NCA _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NCA doub 235 n y N1 C6 NCA sing 236 n y C2 C3 NCA sing 237 n y C2 H2 NCA sing 238 n n C3 C4 NCA doub 239 n y C3 C7 NCA sing 240 n n C4 C5 NCA sing 241 n y C4 H4 NCA sing 242 n n C5 C6 NCA doub 243 n y C5 H5 NCA sing 244 n n C6 H6 NCA sing 245 n n C7 O7 NCA doub 246 n n C7 N7 NCA sing 247 n n N7 HN71 NCA sing 248 n n N7 HN72 NCA sing 249 n n # _atom_sites.entry_id 1R15 _atom_sites.fract_transf_matrix[1][1] 0.016556 _atom_sites.fract_transf_matrix[1][2] -0.000263 _atom_sites.fract_transf_matrix[1][3] -0.000217 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013278 _atom_sites.fract_transf_matrix[2][3] -0.000424 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 N A 1 1179 179 N GLR . J 3 NCA A 1 319 319 NCA NCA . K 3 NCA A 1 419 419 NCA NCA . L 2 N B 1 1179 179 N GLR . M 3 NCA B 1 329 329 NCA NCA . N 3 NCA B 1 429 429 NCA NCA . O 2 N C 1 1179 179 N GLR . P 3 NCA C 1 339 339 NCA NCA . Q 3 NCA C 1 439 439 NCA NCA . R 2 N D 1 1179 179 N GLR . S 3 NCA D 1 349 349 NCA NCA . T 3 NCA D 1 449 449 NCA NCA . U 2 N E 1 1179 179 N GLR . V 3 NCA E 1 359 359 NCA NCA . W 3 NCA E 1 459 459 NCA NCA . X 2 N F 1 1179 179 N GLR . Y 3 NCA F 1 369 369 NCA NCA . Z 3 NCA F 1 469 469 NCA NCA . AA 2 N G 1 1179 179 N GLR . BA 3 NCA G 1 379 379 NCA NCA . CA 3 NCA G 1 479 479 NCA NCA . DA 2 N H 1 1179 179 N GLR . EA 3 NCA H 1 389 389 NCA NCA . FA 3 NCA H 1 489 489 NCA NCA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NCA . . . K 3 0.499 -0.456 22.771 1 58.68 ? N1 NCA 419 A 1 HETATM 2 C C2 NCA . . . K 3 0.894 -1.833 22.77 1 58.14 ? C2 NCA 419 A 1 HETATM 3 C C3 NCA . . . K 3 1.057 -2.574 21.56 1 59.85 ? C3 NCA 419 A 1 HETATM 4 C C4 NCA . . . K 3 0.798 -1.826 20.386 1 60.34 ? C4 NCA 419 A 1 HETATM 5 C C5 NCA . . . K 3 0.415 -0.507 20.391 1 60.27 ? C5 NCA 419 A 1 HETATM 6 C C6 NCA . . . K 3 0.267 0.168 21.58 1 59.51 ? C6 NCA 419 A 1 HETATM 7 C C7 NCA . . . K 3 1.469 -4.082 21.483 1 60.49 ? C7 NCA 419 A 1 HETATM 8 O O7 NCA . . . K 3 1.569 -4.587 20.384 1 60.64 ? O7 NCA 419 A 1 HETATM 9 N N7 NCA . . . K 3 1.702 -4.786 22.572 1 61.21 ? N7 NCA 419 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #