data_1R18 # _model_server_result.job_id DQvviaHZKBgPx79Ded2Tlw _model_server_result.datetime_utc '2024-11-05 01:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1R18 # _exptl.entry_id 1R18 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.9 _cell.angle_gamma 90 _cell.entry_id 1R18 _cell.length_a 72.07 _cell.length_b 45.25 _cell.length_c 61.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 58.398163 0 59.694376 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1R18 _atom_sites.fract_transf_matrix[1][1] 0.013875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 300 300 SAH SAH . C 3 HOH A 1 301 1 HOH TIP . C 3 HOH A 2 302 2 HOH TIP . C 3 HOH A 3 303 3 HOH TIP . C 3 HOH A 4 304 4 HOH TIP . C 3 HOH A 5 305 5 HOH TIP . C 3 HOH A 6 306 6 HOH TIP . C 3 HOH A 7 307 7 HOH TIP . C 3 HOH A 8 308 8 HOH TIP . C 3 HOH A 9 309 9 HOH TIP . C 3 HOH A 10 310 10 HOH TIP . C 3 HOH A 11 311 11 HOH TIP . C 3 HOH A 12 312 12 HOH TIP . C 3 HOH A 13 313 13 HOH TIP . C 3 HOH A 14 314 14 HOH TIP . C 3 HOH A 15 315 15 HOH TIP . C 3 HOH A 16 316 16 HOH TIP . C 3 HOH A 17 317 17 HOH TIP . C 3 HOH A 18 318 18 HOH TIP . C 3 HOH A 19 319 19 HOH TIP . C 3 HOH A 20 320 20 HOH TIP . C 3 HOH A 21 321 21 HOH TIP . C 3 HOH A 22 322 22 HOH TIP . C 3 HOH A 23 323 23 HOH TIP . C 3 HOH A 24 324 24 HOH TIP . C 3 HOH A 25 325 25 HOH TIP . C 3 HOH A 26 326 26 HOH TIP . C 3 HOH A 27 327 27 HOH TIP . C 3 HOH A 28 328 28 HOH TIP . C 3 HOH A 29 329 29 HOH TIP . C 3 HOH A 30 330 30 HOH TIP . C 3 HOH A 31 331 31 HOH TIP . C 3 HOH A 32 332 32 HOH TIP . C 3 HOH A 33 333 33 HOH TIP . C 3 HOH A 34 334 34 HOH TIP . C 3 HOH A 35 335 35 HOH TIP . C 3 HOH A 36 336 36 HOH TIP . C 3 HOH A 37 337 37 HOH TIP . C 3 HOH A 38 338 38 HOH TIP . C 3 HOH A 39 339 39 HOH TIP . C 3 HOH A 40 340 40 HOH TIP . C 3 HOH A 41 341 41 HOH TIP . C 3 HOH A 42 342 42 HOH TIP . C 3 HOH A 43 343 43 HOH TIP . C 3 HOH A 44 344 44 HOH TIP . C 3 HOH A 45 345 45 HOH TIP . C 3 HOH A 46 346 46 HOH TIP . C 3 HOH A 47 347 47 HOH TIP . C 3 HOH A 48 348 48 HOH TIP . C 3 HOH A 49 349 49 HOH TIP . C 3 HOH A 50 350 50 HOH TIP . C 3 HOH A 51 351 51 HOH TIP . C 3 HOH A 52 352 52 HOH TIP . C 3 HOH A 53 353 53 HOH TIP . C 3 HOH A 54 354 54 HOH TIP . C 3 HOH A 55 355 55 HOH TIP . C 3 HOH A 56 356 56 HOH TIP . C 3 HOH A 57 357 57 HOH TIP . C 3 HOH A 58 358 58 HOH TIP . C 3 HOH A 59 359 59 HOH TIP . C 3 HOH A 60 360 60 HOH TIP . C 3 HOH A 61 361 61 HOH TIP . C 3 HOH A 62 362 62 HOH TIP . C 3 HOH A 63 363 63 HOH TIP . C 3 HOH A 64 364 64 HOH TIP . C 3 HOH A 65 365 65 HOH TIP . C 3 HOH A 66 366 66 HOH TIP . C 3 HOH A 67 367 67 HOH TIP . C 3 HOH A 68 368 68 HOH TIP . C 3 HOH A 69 369 69 HOH TIP . C 3 HOH A 70 370 70 HOH TIP . C 3 HOH A 71 371 71 HOH TIP . C 3 HOH A 72 372 72 HOH TIP . C 3 HOH A 73 373 73 HOH TIP . C 3 HOH A 74 374 74 HOH TIP . C 3 HOH A 75 375 75 HOH TIP . C 3 HOH A 76 376 76 HOH TIP . C 3 HOH A 77 377 77 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 20.013 -2.3 16.571 1 15.25 ? N SAH 300 A 1 HETATM 2 C CA SAH . . . B 2 19.331 -3.641 16.883 1 15.25 ? CA SAH 300 A 1 HETATM 3 C CB SAH . . . B 2 20.433 -4.728 16.936 1 15.25 ? CB SAH 300 A 1 HETATM 4 C CG SAH . . . B 2 21.222 -5.066 15.72 1 15.25 ? CG SAH 300 A 1 HETATM 5 S SD SAH . . . B 2 22.218 -6.567 16.06 1 15.25 ? SD SAH 300 A 1 HETATM 6 C C SAH . . . B 2 18.779 -3.589 18.325 1 15.25 ? C SAH 300 A 1 HETATM 7 O O SAH . . . B 2 18.992 -2.597 19.052 1 15.25 ? O SAH 300 A 1 HETATM 8 O OXT SAH . . . B 2 18.14 -4.645 18.67 1 15.25 ? OXT SAH 300 A 1 HETATM 9 C C5' SAH . . . B 2 22.884 -6.729 14.47 1 15.25 ? C5' SAH 300 A 1 HETATM 10 C C4' SAH . . . B 2 21.704 -7.021 13.43 1 15.25 ? C4' SAH 300 A 1 HETATM 11 O O4' SAH . . . B 2 22.413 -7.095 12.206 1 15.25 ? O4' SAH 300 A 1 HETATM 12 C C3' SAH . . . B 2 21.038 -8.372 13.56 1 15.25 ? C3' SAH 300 A 1 HETATM 13 O O3' SAH . . . B 2 19.63 -8.245 13.729 1 15.25 ? O3' SAH 300 A 1 HETATM 14 C C2' SAH . . . B 2 21.489 -9.1 12.228 1 15.25 ? C2' SAH 300 A 1 HETATM 15 O O2' SAH . . . B 2 20.582 -10.117 11.813 1 15.25 ? O2' SAH 300 A 1 HETATM 16 C C1' SAH . . . B 2 21.634 -7.909 11.281 1 15.25 ? C1' SAH 300 A 1 HETATM 17 N N9 SAH . . . B 2 22.364 -8.069 10.171 1 15.25 ? N9 SAH 300 A 1 HETATM 18 C C8 SAH . . . B 2 23.623 -8.587 9.934 1 15.25 ? C8 SAH 300 A 1 HETATM 19 N N7 SAH . . . B 2 24.011 -8.561 8.7 1 15.25 ? N7 SAH 300 A 1 HETATM 20 C C5 SAH . . . B 2 22.925 -7.965 8.003 1 15.25 ? C5 SAH 300 A 1 HETATM 21 C C6 SAH . . . B 2 22.745 -7.652 6.603 1 15.25 ? C6 SAH 300 A 1 HETATM 22 N N6 SAH . . . B 2 23.658 -7.9 5.651 1 15.25 ? N6 SAH 300 A 1 HETATM 23 N N1 SAH . . . B 2 21.537 -7.067 6.297 1 15.25 ? N1 SAH 300 A 1 HETATM 24 C C2 SAH . . . B 2 20.578 -6.79 7.226 1 15.25 ? C2 SAH 300 A 1 HETATM 25 N N3 SAH . . . B 2 20.713 -7.07 8.57 1 15.25 ? N3 SAH 300 A 1 HETATM 26 C C4 SAH . . . B 2 21.912 -7.647 8.886 1 15.25 ? C4 SAH 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #