data_1R1I # _model_server_result.job_id DKloa6pGG73rou5n0kj9LQ _model_server_result.datetime_utc '2024-11-25 09:53:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":754}' # _entry.id 1R1I # _exptl.entry_id 1R1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R1I _cell.length_a 108.845 _cell.length_b 108.845 _cell.length_c 113.071 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 56 1_555 A SG CYS 8 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 26 A CYS 79 1_555 A SG CYS 681 A CYS 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 34 A CYS 87 1_555 A SG CYS 641 A CYS 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 89 A CYS 142 1_555 A SG CYS 357 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 180 A CYS 233 1_555 A SG CYS 188 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 A SG CYS 567 A CYS 620 1_555 A SG CYS 693 A CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 91 A ASN 144 1_555 B C1 NAG . A NAG 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 271 A ASN 324 1_555 C C1 NAG . A NAG 753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 574 A ASN 627 1_555 D C1 NAG . A NAG 754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 A ND2 ASN 574 A ASN 627 1_555 D C2 NAG . A NAG 754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc1 A NE2 HIS 530 A HIS 583 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.707 ? metalc ? metalc2 A NE2 HIS 534 A HIS 587 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc3 A OE1 GLU 593 A GLU 646 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc4 A OE2 GLU 593 A GLU 646 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc5 E ZN ZN . A ZN 1001 1_555 F SG TI1 . A TI1 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc6 E ZN ZN . A ZN 1001 1_555 F O1 TI1 . A TI1 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1R1I _atom_sites.fract_transf_matrix[1][1] 0.009187 _atom_sites.fract_transf_matrix[1][2] 0.005304 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 752 752 NAG NAG . C 2 NAG A 1 753 753 NAG NAG . D 2 NAG A 1 754 754 NAG NAG . E 3 ZN A 1 1001 1 ZN ZN . F 4 TI1 A 1 2001 1 TI1 TI1 . G 5 HOH A 1 1 1 HOH HOH . G 5 HOH A 2 2 2 HOH HOH . G 5 HOH A 3 3 3 HOH HOH . G 5 HOH A 4 4 4 HOH HOH . G 5 HOH A 5 5 5 HOH HOH . G 5 HOH A 6 6 6 HOH HOH . G 5 HOH A 7 7 7 HOH HOH . G 5 HOH A 8 8 8 HOH HOH . G 5 HOH A 9 9 9 HOH HOH . G 5 HOH A 10 10 10 HOH HOH . G 5 HOH A 11 11 11 HOH HOH . G 5 HOH A 12 12 12 HOH HOH . G 5 HOH A 13 13 13 HOH HOH . G 5 HOH A 14 14 14 HOH HOH . G 5 HOH A 15 15 15 HOH HOH . G 5 HOH A 16 16 16 HOH HOH . G 5 HOH A 17 17 17 HOH HOH . G 5 HOH A 18 18 18 HOH HOH . G 5 HOH A 19 19 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 3.449 63.541 30.83 1 59.26 ? C1 NAG 754 A 1 HETATM 2 C C2 NAG . . . D 2 4.14 64.356 29.75 1 57.8 ? C2 NAG 754 A 1 HETATM 3 C C3 NAG . . . D 2 3.15 64.675 28.659 1 58.88 ? C3 NAG 754 A 1 HETATM 4 C C4 NAG . . . D 2 2.513 63.373 28.223 1 60.87 ? C4 NAG 754 A 1 HETATM 5 C C5 NAG . . . D 2 2.049 62.533 29.405 1 65.65 ? C5 NAG 754 A 1 HETATM 6 C C6 NAG . . . D 2 1.366 61.274 28.867 1 69.05 ? C6 NAG 754 A 1 HETATM 7 C C7 NAG . . . D 2 5.994 65.793 30.104 1 61.21 ? C7 NAG 754 A 1 HETATM 8 C C8 NAG . . . D 2 6.77 66.485 31.184 1 59.84 ? C8 NAG 754 A 1 HETATM 9 N N2 NAG . . . D 2 4.707 65.562 30.301 1 59.54 ? N2 NAG 754 A 1 HETATM 10 O O3 NAG . . . D 2 3.853 65.237 27.58 1 64.28 ? O3 NAG 754 A 1 HETATM 11 O O4 NAG . . . D 2 1.379 63.614 27.447 1 57.89 ? O4 NAG 754 A 1 HETATM 12 O O5 NAG . . . D 2 3.136 62.282 30.283 1 56.22 ? O5 NAG 754 A 1 HETATM 13 O O6 NAG . . . D 2 1.014 61.485 27.507 1 71.06 ? O6 NAG 754 A 1 HETATM 14 O O7 NAG . . . D 2 6.552 65.444 29.076 1 68 ? O7 NAG 754 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #