data_1R1J # _model_server_result.job_id n6tDGhVM6VsECqVLI13oRA _model_server_result.datetime_utc '2024-11-14 18:57:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2001}' # _entry.id 1R1J # _exptl.entry_id 1R1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.491 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-PHENYL-2-SULFANYLPROPANOYL)PHENYLALANYLALANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R1J _cell.length_a 107.458 _cell.length_b 107.458 _cell.length_c 111.997 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 56 1_555 A SG CYS 8 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 26 A CYS 79 1_555 A SG CYS 681 A CYS 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 34 A CYS 87 1_555 A SG CYS 641 A CYS 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 89 A CYS 142 1_555 A SG CYS 357 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 A SG CYS 180 A CYS 233 1_555 A SG CYS 188 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 567 A CYS 620 1_555 A SG CYS 693 A CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 91 A ASN 144 1_555 B C1 NAG . A NAG 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 271 A ASN 324 1_555 C C1 NAG . A NAG 753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 574 A ASN 627 1_555 D C1 NAG . A NAG 754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A NE2 HIS 530 A HIS 583 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc2 A NE2 HIS 534 A HIS 587 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 A OE1 GLU 593 A GLU 646 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc4 A OE2 GLU 593 A GLU 646 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc5 E ZN ZN . A ZN 1001 1_555 F O19 OIR . A OIR 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? metalc ? metalc6 E ZN ZN . A ZN 1001 1_555 F S26 OIR . A OIR 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'C21 H24 N2 O4 S' _chem_comp.formula_weight 400.491 _chem_comp.id OIR _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-PHENYL-2-SULFANYLPROPANOYL)PHENYLALANYLALANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C18 OIR doub 267 n n C18 C20 OIR sing 268 n n C18 N9 OIR sing 269 n n C20 C21 OIR sing 270 n n C20 S26 OIR sing 271 n n C20 H20 OIR sing 272 n n C21 C23 OIR sing 273 n n C21 H211 OIR sing 274 n n C21 H212 OIR sing 275 n n C23 C24 OIR doub 276 n y C23 C28 OIR sing 277 n y C24 C25 OIR sing 278 n y C24 H24 OIR sing 279 n n C25 C26 OIR doub 280 n y C25 H25 OIR sing 281 n n C26 C27 OIR sing 282 n y C26 H1 OIR sing 283 n n C27 C28 OIR doub 284 n y C27 H27 OIR sing 285 n n C28 H28 OIR sing 286 n n S26 H26 OIR sing 287 n n N9 C2 OIR sing 288 n n N9 HN9 OIR sing 289 n n C2 C11 OIR sing 290 n n C2 C1 OIR sing 291 n n C2 H2 OIR sing 292 n n C11 O12 OIR doub 293 n n C11 N13 OIR sing 294 n n N13 C14 OIR sing 295 n n N13 H13 OIR sing 296 n n C14 C15 OIR sing 297 n n C14 C19 OIR sing 298 n n C14 H14 OIR sing 299 n n C15 O16 OIR sing 300 n n C15 O17 OIR doub 301 n n O16 H16 OIR sing 302 n n C19 H191 OIR sing 303 n n C19 H192 OIR sing 304 n n C19 H193 OIR sing 305 n n C1 C3 OIR sing 306 n n C1 H11 OIR sing 307 n n C1 H12 OIR sing 308 n n C3 C4 OIR doub 309 n y C3 C8 OIR sing 310 n y C4 C5 OIR sing 311 n y C4 H4 OIR sing 312 n n C5 C6 OIR doub 313 n y C5 H5 OIR sing 314 n n C6 C7 OIR sing 315 n y C6 H6 OIR sing 316 n n C7 C8 OIR doub 317 n y C7 H7 OIR sing 318 n n C8 H8 OIR sing 319 n n # _atom_sites.entry_id 1R1J _atom_sites.fract_transf_matrix[1][1] 0.009306 _atom_sites.fract_transf_matrix[1][2] 0.005373 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 752 752 NAG NAG . C 2 NAG A 1 753 753 NAG NAG . D 2 NAG A 1 754 754 NAG NAG . E 3 ZN A 1 1001 1 ZN ZN . F 4 OIR A 1 2001 1 OIR ROI . G 5 HOH A 1 2002 1 HOH HOH . G 5 HOH A 2 2003 2 HOH HOH . G 5 HOH A 3 2004 3 HOH HOH . G 5 HOH A 4 2005 4 HOH HOH . G 5 HOH A 5 2006 5 HOH HOH . G 5 HOH A 6 2007 6 HOH HOH . G 5 HOH A 7 2008 7 HOH HOH . G 5 HOH A 8 2009 8 HOH HOH . G 5 HOH A 9 2010 9 HOH HOH . G 5 HOH A 10 2011 10 HOH HOH . G 5 HOH A 11 2012 11 HOH HOH . G 5 HOH A 12 2013 12 HOH HOH . G 5 HOH A 13 2014 13 HOH HOH . G 5 HOH A 14 2015 14 HOH HOH . G 5 HOH A 15 2016 15 HOH HOH . G 5 HOH A 16 2017 16 HOH HOH . G 5 HOH A 17 2018 17 HOH HOH . G 5 HOH A 18 2019 18 HOH HOH . G 5 HOH A 19 2020 19 HOH HOH . G 5 HOH A 20 2021 20 HOH HOH . G 5 HOH A 21 2022 21 HOH HOH . G 5 HOH A 22 2023 22 HOH HOH . G 5 HOH A 23 2024 23 HOH HOH . G 5 HOH A 24 2025 24 HOH HOH . G 5 HOH A 25 2026 25 HOH HOH . G 5 HOH A 26 2027 26 HOH HOH . G 5 HOH A 27 2028 27 HOH HOH . G 5 HOH A 28 2029 28 HOH HOH . G 5 HOH A 29 2030 29 HOH HOH . G 5 HOH A 30 2031 30 HOH HOH . G 5 HOH A 31 2032 31 HOH HOH . G 5 HOH A 32 2033 32 HOH HOH . G 5 HOH A 33 2034 33 HOH HOH . G 5 HOH A 34 2035 34 HOH HOH . G 5 HOH A 35 2036 35 HOH HOH . G 5 HOH A 36 2037 36 HOH HOH . G 5 HOH A 37 2038 37 HOH HOH . G 5 HOH A 38 2039 38 HOH HOH . G 5 HOH A 39 2040 39 HOH HOH . G 5 HOH A 40 2041 40 HOH HOH . G 5 HOH A 41 2042 41 HOH HOH . G 5 HOH A 42 2043 42 HOH HOH . G 5 HOH A 43 2044 43 HOH HOH . G 5 HOH A 44 2045 44 HOH HOH . G 5 HOH A 45 2046 45 HOH HOH . G 5 HOH A 46 2047 46 HOH HOH . G 5 HOH A 47 2048 47 HOH HOH . G 5 HOH A 48 2049 48 HOH HOH . G 5 HOH A 49 2050 49 HOH HOH . G 5 HOH A 50 2051 50 HOH HOH . G 5 HOH A 51 2052 51 HOH HOH . G 5 HOH A 52 2053 52 HOH HOH . G 5 HOH A 53 2054 53 HOH HOH . G 5 HOH A 54 2055 54 HOH HOH . G 5 HOH A 55 2056 55 HOH HOH . G 5 HOH A 56 2057 56 HOH HOH . G 5 HOH A 57 2058 57 HOH HOH . G 5 HOH A 58 2059 58 HOH HOH . G 5 HOH A 59 2060 59 HOH HOH . G 5 HOH A 60 2061 60 HOH HOH . G 5 HOH A 61 2062 61 HOH HOH . G 5 HOH A 62 2063 62 HOH HOH . G 5 HOH A 63 2064 63 HOH HOH . G 5 HOH A 64 2065 64 HOH HOH . G 5 HOH A 65 2066 65 HOH HOH . G 5 HOH A 66 2067 66 HOH HOH . G 5 HOH A 67 2068 67 HOH HOH . G 5 HOH A 68 2069 68 HOH HOH . G 5 HOH A 69 2070 69 HOH HOH . G 5 HOH A 70 2071 70 HOH HOH . G 5 HOH A 71 2072 71 HOH HOH . G 5 HOH A 72 2073 72 HOH HOH . G 5 HOH A 73 2074 73 HOH HOH . G 5 HOH A 74 2075 74 HOH HOH . G 5 HOH A 75 2076 75 HOH HOH . G 5 HOH A 76 2077 76 HOH HOH . G 5 HOH A 77 2078 77 HOH HOH . G 5 HOH A 78 2079 78 HOH HOH . G 5 HOH A 79 2080 79 HOH HOH . G 5 HOH A 80 2081 80 HOH HOH . G 5 HOH A 81 2082 81 HOH HOH . G 5 HOH A 82 2083 82 HOH HOH . G 5 HOH A 83 2084 83 HOH HOH . G 5 HOH A 84 2085 84 HOH HOH . G 5 HOH A 85 2086 85 HOH HOH . G 5 HOH A 86 2087 86 HOH HOH . G 5 HOH A 87 2088 87 HOH HOH . G 5 HOH A 88 2089 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 OIR . . . F 4 30.852 42.722 31.325 1 43.98 ? O19 OIR 2001 A 1 HETATM 2 C C18 OIR . . . F 4 29.684 43.069 31.277 1 41.92 ? C18 OIR 2001 A 1 HETATM 3 C C20 OIR . . . F 4 28.821 42.52 30.19 1 45.8 ? C20 OIR 2001 A 1 HETATM 4 C C21 OIR . . . F 4 27.349 42.503 30.575 1 48.19 ? C21 OIR 2001 A 1 HETATM 5 C C23 OIR . . . F 4 26.981 41.075 30.905 1 50.72 ? C23 OIR 2001 A 1 HETATM 6 C C24 OIR . . . F 4 25.765 40.78 31.507 1 52.33 ? C24 OIR 2001 A 1 HETATM 7 C C25 OIR . . . F 4 25.443 39.464 31.813 1 53.87 ? C25 OIR 2001 A 1 HETATM 8 C C26 OIR . . . F 4 26.336 38.44 31.515 1 53.61 ? C26 OIR 2001 A 1 HETATM 9 C C27 OIR . . . F 4 27.55 38.735 30.911 1 52.67 ? C27 OIR 2001 A 1 HETATM 10 C C28 OIR . . . F 4 27.873 40.053 30.608 1 52.17 ? C28 OIR 2001 A 1 HETATM 11 S S26 OIR . . . F 4 29.104 43.579 28.762 1 42.47 ? S26 OIR 2001 A 1 HETATM 12 N N9 OIR . . . F 4 29.175 43.941 32.137 1 36.76 ? N9 OIR 2001 A 1 HETATM 13 C C2 OIR . . . F 4 30.114 44.386 33.158 1 35.18 ? C2 OIR 2001 A 1 HETATM 14 C C11 OIR . . . F 4 30.343 43.305 34.183 1 33.76 ? C11 OIR 2001 A 1 HETATM 15 O O12 OIR . . . F 4 31.478 43.015 34.498 1 34.42 ? O12 OIR 2001 A 1 HETATM 16 N N13 OIR . . . F 4 29.279 42.699 34.691 1 31.76 ? N13 OIR 2001 A 1 HETATM 17 C C14 OIR . . . F 4 29.392 41.793 35.825 1 35.69 ? C14 OIR 2001 A 1 HETATM 18 C C15 OIR . . . F 4 28.464 40.623 35.667 1 36.32 ? C15 OIR 2001 A 1 HETATM 19 O O16 OIR . . . F 4 27.503 40.732 34.924 1 40.13 ? O16 OIR 2001 A 1 HETATM 20 O O17 OIR . . . F 4 28.662 39.57 36.262 1 34.43 ? O17 OIR 2001 A 1 HETATM 21 C C19 OIR . . . F 4 29.057 42.54 37.114 1 33.76 ? C19 OIR 2001 A 1 HETATM 22 C C1 OIR . . . F 4 29.613 45.673 33.811 1 31.16 ? C1 OIR 2001 A 1 HETATM 23 C C3 OIR . . . F 4 30.788 46.213 34.597 1 32.2 ? C3 OIR 2001 A 1 HETATM 24 C C4 OIR . . . F 4 30.71 46.379 35.977 1 33.46 ? C4 OIR 2001 A 1 HETATM 25 C C5 OIR . . . F 4 31.803 46.866 36.687 1 32.1 ? C5 OIR 2001 A 1 HETATM 26 C C6 OIR . . . F 4 32.982 47.177 36.02 1 27.46 ? C6 OIR 2001 A 1 HETATM 27 C C7 OIR . . . F 4 33.062 47.007 34.647 1 26.51 ? C7 OIR 2001 A 1 HETATM 28 C C8 OIR . . . F 4 31.97 46.527 33.936 1 29.73 ? C8 OIR 2001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #