data_1R1K # _model_server_result.job_id kOGT5ZxCs0jeJxYZdyILSw _model_server_result.datetime_utc '2025-07-16 09:39:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3000}' # _entry.id 1R1K # _exptl.entry_id 1R1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.635 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3,14,20,22-PENTAHYDROXYCHOLEST-7-EN-6-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R1K _cell.length_a 57.401 _cell.length_b 57.401 _cell.length_c 302.696 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 y,x,-z+2 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 605.392 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H44 O6' _chem_comp.formula_weight 464.635 _chem_comp.id P1A _chem_comp.mon_nstd_flag . _chem_comp.name 2,3,14,20,22-PENTAHYDROXYCHOLEST-7-EN-6-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PONASTERONE A;25-DEOXYECDYSTERONE;25-DEOXY-20-HYDROXYECDYSONE,' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C10 P1A sing 353 n n C5 C4 P1A sing 354 n n C5 C6 P1A sing 355 n n C5 H5 P1A sing 356 n n C10 C1 P1A sing 357 n n C10 C9 P1A sing 358 n n C10 C19 P1A sing 359 n n C1 C2 P1A sing 360 n n C1 H11 P1A sing 361 n n C1 H12 P1A sing 362 n n C2 C3 P1A sing 363 n n C2 O2 P1A sing 364 n n C2 H2 P1A sing 365 n n C3 C4 P1A sing 366 n n C3 O3 P1A sing 367 n n C3 H3 P1A sing 368 n n C4 H41 P1A sing 369 n n C4 H42 P1A sing 370 n n C9 C11 P1A sing 371 n n C9 C8 P1A sing 372 n n C9 H9 P1A sing 373 n n C19 H191 P1A sing 374 n n C19 H192 P1A sing 375 n n C19 H193 P1A sing 376 n n C11 C12 P1A sing 377 n n C11 H111 P1A sing 378 n n C11 H112 P1A sing 379 n n C8 C14 P1A sing 380 n n C8 C7 P1A doub 381 n n C12 C13 P1A sing 382 n n C12 H121 P1A sing 383 n n C12 H122 P1A sing 384 n n C14 C13 P1A sing 385 n n C14 O14 P1A sing 386 n n C14 C15 P1A sing 387 n n C13 C18 P1A sing 388 n n C13 C17 P1A sing 389 n n C18 H181 P1A sing 390 n n C18 H182 P1A sing 391 n n C18 H183 P1A sing 392 n n C17 C20 P1A sing 393 n n C17 C16 P1A sing 394 n n C17 H17 P1A sing 395 n n O14 H14 P1A sing 396 n n C15 C16 P1A sing 397 n n C15 H151 P1A sing 398 n n C15 H152 P1A sing 399 n n C20 C22 P1A sing 400 n n C20 O20 P1A sing 401 n n C20 C21 P1A sing 402 n n C16 H161 P1A sing 403 n n C16 H162 P1A sing 404 n n C22 O22 P1A sing 405 n n C22 C23 P1A sing 406 n n C22 H22 P1A sing 407 n n O20 H20 P1A sing 408 n n C21 H211 P1A sing 409 n n C21 H212 P1A sing 410 n n C21 H213 P1A sing 411 n n C6 C7 P1A sing 412 n n C6 O6 P1A doub 413 n n C7 H7 P1A sing 414 n n O3 HO3 P1A sing 415 n n O2 HO2 P1A sing 416 n n O22 H1 P1A sing 417 n n C23 C24 P1A sing 418 n n C23 H231 P1A sing 419 n n C23 H232 P1A sing 420 n n C24 C25 P1A sing 421 n n C24 H241 P1A sing 422 n n C24 H242 P1A sing 423 n n C25 C26 P1A sing 424 n n C25 C27 P1A sing 425 n n C25 H25 P1A sing 426 n n C26 H261 P1A sing 427 n n C26 H262 P1A sing 428 n n C26 H263 P1A sing 429 n n C27 H271 P1A sing 430 n n C27 H272 P1A sing 431 n n C27 H273 P1A sing 432 n n # _atom_sites.entry_id 1R1K _atom_sites.fract_transf_matrix[1][1] 0.017421 _atom_sites.fract_transf_matrix[1][2] 0.010058 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P1A D 1 3000 3000 P1A P1A . D 4 EPH A 1 4000 4000 EPH EPH . E 5 HOH D 1 1002 1002 HOH TIP . E 5 HOH D 2 1003 1003 HOH TIP . E 5 HOH D 3 1008 1008 HOH TIP . F 5 HOH A 1 1001 1001 HOH TIP . F 5 HOH A 2 1005 1005 HOH TIP . F 5 HOH A 3 1006 1006 HOH TIP . F 5 HOH A 4 1009 1009 HOH TIP . F 5 HOH A 5 1010 1010 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 P1A . . . C 3 4.823 28.608 253.742 1 46.1 ? C5 P1A 3000 D 1 HETATM 2 C C10 P1A . . . C 3 4.244 28.552 255.216 1 46.56 ? C10 P1A 3000 D 1 HETATM 3 C C1 P1A . . . C 3 3.841 30.07 255.703 1 44.68 ? C1 P1A 3000 D 1 HETATM 4 C C2 P1A . . . C 3 5.052 31.019 255.472 1 44.21 ? C2 P1A 3000 D 1 HETATM 5 C C3 P1A . . . C 3 5.594 30.995 253.97 1 43.93 ? C3 P1A 3000 D 1 HETATM 6 C C4 P1A . . . C 3 5.95 29.601 253.48 1 44.56 ? C4 P1A 3000 D 1 HETATM 7 C C9 P1A . . . C 3 5.352 27.919 256.245 1 45.8 ? C9 P1A 3000 D 1 HETATM 8 C C19 P1A . . . C 3 2.846 27.738 255.089 1 47.93 ? C19 P1A 3000 D 1 HETATM 9 C C11 P1A . . . C 3 4.739 27.778 257.707 1 44.7 ? C11 P1A 3000 D 1 HETATM 10 C C8 P1A . . . C 3 5.986 26.545 255.581 1 46.37 ? C8 P1A 3000 D 1 HETATM 11 C C12 P1A . . . C 3 5.509 26.784 258.541 1 45.42 ? C12 P1A 3000 D 1 HETATM 12 C C14 P1A . . . C 3 6.582 25.576 256.597 1 46.37 ? C14 P1A 3000 D 1 HETATM 13 C C13 P1A . . . C 3 5.661 25.326 257.858 1 46.49 ? C13 P1A 3000 D 1 HETATM 14 C C18 P1A . . . C 3 4.249 24.687 257.536 1 45.46 ? C18 P1A 3000 D 1 HETATM 15 C C17 P1A . . . C 3 6.541 24.284 258.631 1 46.42 ? C17 P1A 3000 D 1 HETATM 16 O O14 P1A . . . C 3 7.811 26.262 256.854 1 46.23 ? O14 P1A 3000 D 1 HETATM 17 C C15 P1A . . . C 3 7.074 24.154 256.165 1 45.38 ? C15 P1A 3000 D 1 HETATM 18 C C20 P1A . . . C 3 6.162 23.545 259.946 1 49.62 ? C20 P1A 3000 D 1 HETATM 19 C C16 P1A . . . C 3 7.027 23.327 257.466 1 45.34 ? C16 P1A 3000 D 1 HETATM 20 C C22 P1A . . . C 3 7.414 22.51 260.372 1 51.02 ? C22 P1A 3000 D 1 HETATM 21 O O20 P1A . . . C 3 5.047 22.793 259.632 1 49.71 ? O20 P1A 3000 D 1 HETATM 22 C C21 P1A . . . C 3 5.702 24.587 261.115 1 47.82 ? C21 P1A 3000 D 1 HETATM 23 C C6 P1A . . . C 3 5.315 27.179 253.263 1 48.6 ? C6 P1A 3000 D 1 HETATM 24 C C7 P1A . . . C 3 5.918 26.221 254.264 1 47.96 ? C7 P1A 3000 D 1 HETATM 25 O O3 P1A . . . C 3 4.654 31.42 253.18 1 43.27 ? O3 P1A 3000 D 1 HETATM 26 O O2 P1A . . . C 3 4.749 32.335 255.855 1 47.33 ? O2 P1A 3000 D 1 HETATM 27 O O22 P1A . . . C 3 7.074 21.727 261.519 1 48.77 ? O22 P1A 3000 D 1 HETATM 28 C C23 P1A . . . C 3 8.793 23.225 260.749 1 52.86 ? C23 P1A 3000 D 1 HETATM 29 C C24 P1A . . . C 3 9.803 22.102 261.036 1 56.1 ? C24 P1A 3000 D 1 HETATM 30 C C25 P1A . . . C 3 11.274 22.383 260.979 1 55.38 ? C25 P1A 3000 D 1 HETATM 31 C C26 P1A . . . C 3 11.752 22.169 259.583 1 55.11 ? C26 P1A 3000 D 1 HETATM 32 C C27 P1A . . . C 3 11.933 21.434 261.972 1 54.01 ? C27 P1A 3000 D 1 HETATM 33 O O6 P1A . . . C 3 5.278 26.812 252.139 1 51.99 ? O6 P1A 3000 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #