data_1R1K # _model_server_result.job_id rm7f-ECuA1pyXAnmLiVLnA _model_server_result.datetime_utc '2025-07-13 17:28:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":4000}' # _entry.id 1R1K # _exptl.entry_id 1R1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 709.933 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R1K _cell.length_a 57.401 _cell.length_b 57.401 _cell.length_c 302.696 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 y,x,-z+2 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 605.392 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C39 H68 N O8 P' _chem_comp.formula_weight 709.933 _chem_comp.id EPH _chem_comp.mon_nstd_flag . _chem_comp.name L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EPH sing 83 n n C1 O2 EPH sing 84 n n C1 H11 EPH sing 85 n n C1 H12A EPH sing 86 n n C2 C37 EPH sing 87 n n C2 O1 EPH sing 88 n n C2 H2 EPH sing 89 n n C4 O2 EPH sing 90 n n C4 O4 EPH doub 91 n n C4 C18 EPH sing 92 n n C18 C19 EPH sing 93 n n C18 H181 EPH sing 94 n n C18 H182 EPH sing 95 n n C19 C20 EPH sing 96 n n C19 H191 EPH sing 97 n n C19 H192 EPH sing 98 n n C20 C21 EPH sing 99 n n C20 H201 EPH sing 100 n n C20 H202 EPH sing 101 n n C21 C22 EPH sing 102 n n C21 H211 EPH sing 103 n n C21 H212 EPH sing 104 n n C22 C23 EPH sing 105 n n C22 H221 EPH sing 106 n n C22 H222 EPH sing 107 n n C23 C24 EPH sing 108 n n C23 H231 EPH sing 109 n n C23 H232 EPH sing 110 n n C24 C25 EPH doub 111 e n C24 H24 EPH sing 112 n n C25 C26 EPH sing 113 n n C25 H25 EPH sing 114 n n C26 C27 EPH sing 115 n n C26 H261 EPH sing 116 n n C26 H262 EPH sing 117 n n C27 C28 EPH sing 118 n n C27 H271 EPH sing 119 n n C27 H272 EPH sing 120 n n C28 C29 EPH doub 121 e n C28 H28 EPH sing 122 n n C29 C30 EPH sing 123 n n C29 H29 EPH sing 124 n n C30 C31 EPH sing 125 n n C30 H301 EPH sing 126 n n C30 H302 EPH sing 127 n n C31 C32 EPH sing 128 n n C31 H311 EPH sing 129 n n C31 H312 EPH sing 130 n n C32 C33 EPH doub 131 e n C32 H32 EPH sing 132 n n C33 C34 EPH sing 133 n n C33 H33 EPH sing 134 n n C34 H341 EPH sing 135 n n C34 H342 EPH sing 136 n n C34 H343 EPH sing 137 n n C37 O5 EPH sing 138 n n C37 H371 EPH sing 139 n n C37 H372 EPH sing 140 n n O5 P1 EPH sing 141 n n C3 O1 EPH sing 142 n n C3 O3 EPH doub 143 n n C3 C5 EPH sing 144 n n C5 C6 EPH sing 145 n n C5 H51 EPH sing 146 n n C5 H52 EPH sing 147 n n C6 C7 EPH sing 148 n n C6 H61 EPH sing 149 n n C6 H62 EPH sing 150 n n C7 C8 EPH sing 151 n n C7 H71 EPH sing 152 n n C7 H72 EPH sing 153 n n C8 C9 EPH sing 154 n n C8 H81 EPH sing 155 n n C8 H82 EPH sing 156 n n C9 C10 EPH sing 157 n n C9 H91 EPH sing 158 n n C9 H92 EPH sing 159 n n C10 C11 EPH sing 160 n n C10 H101 EPH sing 161 n n C10 H102 EPH sing 162 n n C11 C12 EPH sing 163 n n C11 H111 EPH sing 164 n n C11 H112 EPH sing 165 n n C12 C13 EPH doub 166 e n C12 H12 EPH sing 167 n n C13 C14 EPH sing 168 n n C13 H13 EPH sing 169 n n C14 C15 EPH sing 170 n n C14 H141 EPH sing 171 n n C14 H142 EPH sing 172 n n C15 C16 EPH doub 173 e n C15 H15 EPH sing 174 n n C16 C17 EPH sing 175 n n C16 H16 EPH sing 176 n n C17 C35 EPH sing 177 n n C17 H171 EPH sing 178 n n C17 H172 EPH sing 179 n n C35 C36 EPH sing 180 n n C35 H351 EPH sing 181 n n C35 H352 EPH sing 182 n n C36 H361 EPH sing 183 n n C36 H362 EPH sing 184 n n C36 H363 EPH sing 185 n n P1 O6 EPH sing 186 n n P1 O7 EPH doub 187 n n P1 O8 EPH sing 188 n n O6 HO6 EPH sing 189 n n O8 C38 EPH sing 190 n n C38 C39 EPH sing 191 n n C38 H381 EPH sing 192 n n C38 H382 EPH sing 193 n n C39 N1 EPH sing 194 n n C39 H391 EPH sing 195 n n C39 H392 EPH sing 196 n n N1 HN11 EPH sing 197 n n N1 HN12 EPH sing 198 n n # _atom_sites.entry_id 1R1K _atom_sites.fract_transf_matrix[1][1] 0.017421 _atom_sites.fract_transf_matrix[1][2] 0.010058 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P1A D 1 3000 3000 P1A P1A . D 4 EPH A 1 4000 4000 EPH EPH . E 5 HOH D 1 1002 1002 HOH TIP . E 5 HOH D 2 1003 1003 HOH TIP . E 5 HOH D 3 1008 1008 HOH TIP . F 5 HOH A 1 1001 1001 HOH TIP . F 5 HOH A 2 1005 1005 HOH TIP . F 5 HOH A 3 1006 1006 HOH TIP . F 5 HOH A 4 1009 1009 HOH TIP . F 5 HOH A 5 1010 1010 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPH . . . D 4 22.385 16.692 293.871 1 98.21 ? C1 EPH 4000 A 1 HETATM 2 C C2 EPH . . . D 4 22.477 15.567 292.815 1 100.25 ? C2 EPH 4000 A 1 HETATM 3 C C4 EPH . . . D 4 20.616 17.367 295.498 1 92.83 ? C4 EPH 4000 A 1 HETATM 4 O O2 EPH . . . D 4 21.069 16.594 294.493 1 94.77 ? O2 EPH 4000 A 1 HETATM 5 O O4 EPH . . . D 4 21.227 18.25 296.046 1 92.57 ? O4 EPH 4000 A 1 HETATM 6 C C18 EPH . . . D 4 19.162 16.962 295.875 1 91.3 ? C18 EPH 4000 A 1 HETATM 7 C C19 EPH . . . D 4 18.172 18.141 295.837 1 88.85 ? C19 EPH 4000 A 1 HETATM 8 C C20 EPH . . . D 4 17.739 18.481 294.414 1 87.6 ? C20 EPH 4000 A 1 HETATM 9 C C21 EPH . . . D 4 16.802 19.646 294.423 1 86.79 ? C21 EPH 4000 A 1 HETATM 10 C C22 EPH . . . D 4 16.181 19.926 293.061 1 87.28 ? C22 EPH 4000 A 1 HETATM 11 C C23 EPH . . . D 4 14.64 19.81 293.058 1 88.01 ? C23 EPH 4000 A 1 HETATM 12 C C24 EPH . . . D 4 14.116 18.357 292.965 1 87.85 ? C24 EPH 4000 A 1 HETATM 13 C C25 EPH . . . D 4 12.715 18.243 292.292 1 88.01 ? C25 EPH 4000 A 1 HETATM 14 C C26 EPH . . . D 4 11.994 16.873 292.45 1 86.32 ? C26 EPH 4000 A 1 HETATM 15 C C27 EPH . . . D 4 10.486 16.966 292.136 1 86.11 ? C27 EPH 4000 A 1 HETATM 16 C C28 EPH . . . D 4 9.607 17.067 293.394 1 86.89 ? C28 EPH 4000 A 1 HETATM 17 C C29 EPH . . . D 4 9.365 18.502 293.915 1 88.34 ? C29 EPH 4000 A 1 HETATM 18 C C30 EPH . . . D 4 8.321 19.372 293.147 1 89.83 ? C30 EPH 4000 A 1 HETATM 19 C C31 EPH . . . D 4 7.123 18.67 292.448 1 91.27 ? C31 EPH 4000 A 1 HETATM 20 C C32 EPH . . . D 4 6.803 19.178 290.999 1 92.33 ? C32 EPH 4000 A 1 HETATM 21 C C33 EPH . . . D 4 7.683 20.305 290.424 1 92.41 ? C33 EPH 4000 A 1 HETATM 22 C C34 EPH . . . D 4 7.147 20.839 289.085 1 92.46 ? C34 EPH 4000 A 1 HETATM 23 C C37 EPH . . . D 4 23.851 15.555 292.116 1 103.2 ? C37 EPH 4000 A 1 HETATM 24 O O5 EPH . . . D 4 23.902 14.422 291.212 1 108.48 ? O5 EPH 4000 A 1 HETATM 25 C C3 EPH . . . D 4 20.471 14.848 291.672 1 98.93 ? C3 EPH 4000 A 1 HETATM 26 O O1 EPH . . . D 4 21.405 15.788 291.875 1 99.01 ? O1 EPH 4000 A 1 HETATM 27 O O3 EPH . . . D 4 20.429 13.776 292.223 1 99.37 ? O3 EPH 4000 A 1 HETATM 28 C C5 EPH . . . D 4 19.428 15.269 290.628 1 98.26 ? C5 EPH 4000 A 1 HETATM 29 C C6 EPH . . . D 4 18.021 14.819 291.004 1 97.7 ? C6 EPH 4000 A 1 HETATM 30 C C7 EPH . . . D 4 16.961 15.181 289.987 1 96.67 ? C7 EPH 4000 A 1 HETATM 31 C C8 EPH . . . D 4 15.861 16.037 290.565 1 97.33 ? C8 EPH 4000 A 1 HETATM 32 C C9 EPH . . . D 4 14.783 16.372 289.544 1 97.1 ? C9 EPH 4000 A 1 HETATM 33 C C10 EPH . . . D 4 15.085 17.635 288.758 1 96.85 ? C10 EPH 4000 A 1 HETATM 34 C C11 EPH . . . D 4 13.848 18.22 288.094 1 94.88 ? C11 EPH 4000 A 1 HETATM 35 C C12 EPH . . . D 4 13.316 19.398 288.878 1 94.29 ? C12 EPH 4000 A 1 HETATM 36 C C13 EPH . . . D 4 12.775 20.491 287.974 1 93.68 ? C13 EPH 4000 A 1 HETATM 37 C C14 EPH . . . D 4 11.334 20.871 288.35 1 93.76 ? C14 EPH 4000 A 1 HETATM 38 C C15 EPH . . . D 4 11.13 22.298 288.942 1 92.51 ? C15 EPH 4000 A 1 HETATM 39 C C16 EPH . . . D 4 10.874 22.375 290.472 1 91.55 ? C16 EPH 4000 A 1 HETATM 40 C C17 EPH . . . D 4 12.139 22.247 291.297 1 90.87 ? C17 EPH 4000 A 1 HETATM 41 C C35 EPH . . . D 4 13.022 23.45 291.056 1 90.02 ? C35 EPH 4000 A 1 HETATM 42 C C36 EPH . . . D 4 14.224 23.375 291.975 1 90.27 ? C36 EPH 4000 A 1 HETATM 43 P P1 EPH . . . D 4 24.043 14.786 289.724 1 111.43 ? P1 EPH 4000 A 1 HETATM 44 O O6 EPH . . . D 4 23.739 13.619 288.945 1 109.87 ? O6 EPH 4000 A 1 HETATM 45 O O7 EPH . . . D 4 25.43 14.417 289.762 1 111.06 ? O7 EPH 4000 A 1 HETATM 46 O O8 EPH . . . D 4 24.401 16.073 289.183 1 111.29 ? O8 EPH 4000 A 1 HETATM 47 C C38 EPH . . . D 4 23.164 16.71 288.522 1 111.04 ? C38 EPH 4000 A 1 HETATM 48 C C39 EPH . . . D 4 23.392 16.865 287.021 1 109.87 ? C39 EPH 4000 A 1 HETATM 49 N N1 EPH . . . D 4 24.443 17.865 286.802 1 110.91 ? N1 EPH 4000 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 49 #