data_1R1L
#
_model_server_result.job_id            EuydNf4RQ-JWcyZRx0Kk1g 
_model_server_result.datetime_utc      '2024-10-25 20:34:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1r1l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":961}' 
#
_entry.id    1R1L 
#
_exptl.entry_id    1R1L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.29 
_cell.angle_gamma         90 
_cell.entry_id            1R1L 
_cell.length_a            69.171 
_cell.length_b            100.421 
_cell.length_c            87.198 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1R1L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 L CYS 8 1_555 A SG CYS 128 L CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 21 L CYS 21 1_555 A SG CYS 95 L CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 247 L CYS 247 1_555 A SG CYS 430 L CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 B SG CYS 8 I CYS 8 1_555 B SG CYS 128 I CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 B SG CYS 21 I CYS 21 1_555 B SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 247 I CYS 247 1_555 B SG CYS 430 I CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 C C ACE 1 C ACE 1 1_555 C N SER 2 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 M C FOR . D FOR 9 1_555 D N NLE 1 D NLE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 D C NLE 1 D NLE 10 1_555 D N LEU 2 D LEU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 259 n n 
C1 O1 NAG sing 260 n n 
C1 O5 NAG sing 261 n n 
C1 H1 NAG sing 262 n n 
C2 C3 NAG sing 263 n n 
C2 N2 NAG sing 264 n n 
C2 H2 NAG sing 265 n n 
C3 C4 NAG sing 266 n n 
C3 O3 NAG sing 267 n n 
C3 H3 NAG sing 268 n n 
C4 C5 NAG sing 269 n n 
C4 O4 NAG sing 270 n n 
C4 H4 NAG sing 271 n n 
C5 C6 NAG sing 272 n n 
C5 O5 NAG sing 273 n n 
C5 H5 NAG sing 274 n n 
C6 O6 NAG sing 275 n n 
C6 H61 NAG sing 276 n n 
C6 H62 NAG sing 277 n n 
C7 C8 NAG sing 278 n n 
C7 N2 NAG sing 279 n n 
C7 O7 NAG doub 280 n n 
C8 H81 NAG sing 281 n n 
C8 H82 NAG sing 282 n n 
C8 H83 NAG sing 283 n n 
N2 HN2 NAG sing 284 n n 
O1 HO1 NAG sing 285 n n 
O3 HO3 NAG sing 286 n n 
O4 HO4 NAG sing 287 n n 
O6 HO6 NAG sing 288 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1R1L 
_atom_sites.fract_transf_matrix[1][1]    0.014457 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003682 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009958 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 NAG L 1 801 801 NAG NAG . 
F 4 NAG L 1 841 841 NAG NAG . 
G 4 NAG I 1 901 801 NAG NAG . 
H 4 NAG I 1 941 841 NAG NAG . 
I 4 NAG I 1 942 842 NAG NAG . 
J 4 NAG I 1 961 861 NAG NAG . 
K 4 NAG I 1 962 862 NAG NAG . 
L 5 GOL C 1 200 100 GOL GOL . 
M 6 FOR D 1 9 9 FOR FOR . 
N 7 HOH L 1 842 3 HOH HOH . 
N 7 HOH L 2 843 7 HOH HOH . 
N 7 HOH L 3 844 10 HOH HOH . 
N 7 HOH L 4 845 12 HOH HOH . 
N 7 HOH L 5 846 13 HOH HOH . 
N 7 HOH L 6 847 18 HOH HOH . 
N 7 HOH L 7 848 27 HOH HOH . 
N 7 HOH L 8 849 31 HOH HOH . 
N 7 HOH L 9 850 32 HOH HOH . 
N 7 HOH L 10 851 35 HOH HOH . 
N 7 HOH L 11 852 36 HOH HOH . 
N 7 HOH L 12 853 38 HOH HOH . 
N 7 HOH L 13 854 39 HOH HOH . 
N 7 HOH L 14 855 40 HOH HOH . 
N 7 HOH L 15 856 42 HOH HOH . 
N 7 HOH L 16 857 43 HOH HOH . 
N 7 HOH L 17 858 44 HOH HOH . 
N 7 HOH L 18 859 49 HOH HOH . 
N 7 HOH L 19 860 59 HOH HOH . 
N 7 HOH L 20 861 63 HOH HOH . 
N 7 HOH L 21 862 67 HOH HOH . 
N 7 HOH L 22 863 70 HOH HOH . 
N 7 HOH L 23 864 72 HOH HOH . 
N 7 HOH L 24 865 74 HOH HOH . 
N 7 HOH L 25 866 75 HOH HOH . 
N 7 HOH L 26 867 76 HOH HOH . 
N 7 HOH L 27 868 78 HOH HOH . 
N 7 HOH L 28 869 81 HOH HOH . 
N 7 HOH L 29 870 83 HOH HOH . 
N 7 HOH L 30 871 84 HOH HOH . 
N 7 HOH L 31 872 85 HOH HOH . 
N 7 HOH L 32 873 86 HOH HOH . 
N 7 HOH L 33 874 90 HOH HOH . 
N 7 HOH L 34 875 92 HOH HOH . 
N 7 HOH L 35 876 93 HOH HOH . 
N 7 HOH L 36 877 94 HOH HOH . 
N 7 HOH L 37 878 95 HOH HOH . 
N 7 HOH L 38 879 96 HOH HOH . 
N 7 HOH L 39 880 97 HOH HOH . 
N 7 HOH L 40 881 98 HOH HOH . 
N 7 HOH L 41 882 114 HOH HOH . 
N 7 HOH L 42 883 115 HOH HOH . 
O 7 HOH I 1 963 1 HOH HOH . 
O 7 HOH I 2 964 2 HOH HOH . 
O 7 HOH I 3 965 4 HOH HOH . 
O 7 HOH I 4 966 5 HOH HOH . 
O 7 HOH I 5 967 6 HOH HOH . 
O 7 HOH I 6 968 8 HOH HOH . 
O 7 HOH I 7 969 9 HOH HOH . 
O 7 HOH I 8 970 11 HOH HOH . 
O 7 HOH I 9 971 14 HOH HOH . 
O 7 HOH I 10 972 15 HOH HOH . 
O 7 HOH I 11 973 16 HOH HOH . 
O 7 HOH I 12 974 17 HOH HOH . 
O 7 HOH I 13 975 19 HOH HOH . 
O 7 HOH I 14 976 20 HOH HOH . 
O 7 HOH I 15 977 21 HOH HOH . 
O 7 HOH I 16 978 22 HOH HOH . 
O 7 HOH I 17 979 23 HOH HOH . 
O 7 HOH I 18 980 24 HOH HOH . 
O 7 HOH I 19 981 25 HOH HOH . 
O 7 HOH I 20 982 26 HOH HOH . 
O 7 HOH I 21 983 28 HOH HOH . 
O 7 HOH I 22 984 29 HOH HOH . 
O 7 HOH I 23 985 30 HOH HOH . 
O 7 HOH I 24 986 33 HOH HOH . 
O 7 HOH I 25 987 34 HOH HOH . 
O 7 HOH I 26 988 37 HOH HOH . 
O 7 HOH I 27 989 41 HOH HOH . 
O 7 HOH I 28 990 48 HOH HOH . 
O 7 HOH I 29 991 45 HOH HOH . 
O 7 HOH I 30 992 46 HOH HOH . 
O 7 HOH I 31 993 47 HOH HOH . 
O 7 HOH I 32 994 50 HOH HOH . 
O 7 HOH I 33 995 51 HOH HOH . 
O 7 HOH I 34 996 52 HOH HOH . 
O 7 HOH I 35 997 53 HOH HOH . 
O 7 HOH I 36 998 54 HOH HOH . 
O 7 HOH I 37 999 55 HOH HOH . 
O 7 HOH I 38 1000 56 HOH HOH . 
O 7 HOH I 39 1001 57 HOH HOH . 
O 7 HOH I 40 1002 58 HOH HOH . 
O 7 HOH I 41 1003 60 HOH HOH . 
O 7 HOH I 42 1004 61 HOH HOH . 
O 7 HOH I 43 1005 62 HOH HOH . 
O 7 HOH I 44 1006 64 HOH HOH . 
O 7 HOH I 45 1007 66 HOH HOH . 
O 7 HOH I 46 1008 69 HOH HOH . 
O 7 HOH I 47 1009 71 HOH HOH . 
O 7 HOH I 48 1010 73 HOH HOH . 
O 7 HOH I 49 1011 77 HOH HOH . 
O 7 HOH I 50 1012 79 HOH HOH . 
O 7 HOH I 51 1013 80 HOH HOH . 
O 7 HOH I 52 1014 82 HOH HOH . 
O 7 HOH I 53 1015 87 HOH HOH . 
O 7 HOH I 54 1016 88 HOH HOH . 
O 7 HOH I 55 1017 89 HOH HOH . 
O 7 HOH I 56 1018 91 HOH HOH . 
O 7 HOH I 57 1019 99 HOH HOH . 
O 7 HOH I 58 1020 100 HOH HOH . 
O 7 HOH I 59 1021 101 HOH HOH . 
O 7 HOH I 60 1022 102 HOH HOH . 
O 7 HOH I 61 1023 103 HOH HOH . 
O 7 HOH I 62 1024 104 HOH HOH . 
O 7 HOH I 63 1025 105 HOH HOH . 
O 7 HOH I 64 1026 106 HOH HOH . 
O 7 HOH I 65 1027 107 HOH HOH . 
O 7 HOH I 66 1028 108 HOH HOH . 
O 7 HOH I 67 1029 109 HOH HOH . 
O 7 HOH I 68 1030 110 HOH HOH . 
O 7 HOH I 69 1031 111 HOH HOH . 
O 7 HOH I 70 1032 112 HOH HOH . 
O 7 HOH I 71 1033 113 HOH HOH . 
O 7 HOH I 72 1034 116 HOH HOH . 
O 7 HOH I 73 1035 117 HOH HOH . 
O 7 HOH I 74 1036 118 HOH HOH . 
O 7 HOH I 75 1037 119 HOH HOH . 
O 7 HOH I 76 1038 120 HOH HOH . 
P 7 HOH D 1 68 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 4 21.36 19.283 1.612 1 88.23 ? C1 NAG 961 I 1 
HETATM 2 C C2 NAG . . . J 4 20.261 19.547 0.57 1 88.23 ? C2 NAG 961 I 1 
HETATM 3 C C3 NAG . . . J 4 20.787 20.455 -0.566 1 88.23 ? C3 NAG 961 I 1 
HETATM 4 C C4 NAG . . . J 4 21.513 21.684 -0.007 1 88.23 ? C4 NAG 961 I 1 
HETATM 5 C C5 NAG . . . J 4 22.571 21.236 0.985 1 88.23 ? C5 NAG 961 I 1 
HETATM 6 C C6 NAG . . . J 4 23.338 22.395 1.59 1 88.23 ? C6 NAG 961 I 1 
HETATM 7 C C7 NAG . . . J 4 18.912 18.232 -0.949 1 88.23 ? C7 NAG 961 I 1 
HETATM 8 C C8 NAG . . . J 4 19.429 18.017 -2.364 1 88.23 ? C8 NAG 961 I 1 
HETATM 9 N N2 NAG . . . J 4 19.816 18.274 0.027 1 88.23 ? N2 NAG 961 I 1 
HETATM 10 O O1 NAG . . . J 4 20.819 18.636 2.711 1 88.23 ? O1 NAG 961 I 1 
HETATM 11 O O3 NAG . . . J 4 19.706 20.881 -1.387 1 88.23 ? O3 NAG 961 I 1 
HETATM 12 O O4 NAG . . . J 4 22.127 22.405 -1.061 1 88.23 ? O4 NAG 961 I 1 
HETATM 13 O O5 NAG . . . J 4 21.934 20.518 2.058 1 88.23 ? O5 NAG 961 I 1 
HETATM 14 O O6 NAG . . . J 4 24.092 23.081 0.603 1 88.23 ? O6 NAG 961 I 1 
HETATM 15 O O7 NAG . . . J 4 17.703 18.358 -0.746 1 88.23 ? O7 NAG 961 I 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#