data_1R20 # _model_server_result.job_id 35npjKvM8bkeMdN34Gg4vw _model_server_result.datetime_utc '2025-07-09 18:50:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4000}' # _entry.id 1R20 # _exptl.entry_id 1R20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 709.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R20 _cell.length_a 149.429 _cell.length_b 149.429 _cell.length_c 61.058 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 61.058 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C39 H68 N O8 P' _chem_comp.formula_weight 709.933 _chem_comp.id EPH _chem_comp.mon_nstd_flag . _chem_comp.name L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EPH sing 83 n n C1 O2 EPH sing 84 n n C1 H11 EPH sing 85 n n C1 H12A EPH sing 86 n n C2 C37 EPH sing 87 n n C2 O1 EPH sing 88 n n C2 H2 EPH sing 89 n n C4 O2 EPH sing 90 n n C4 O4 EPH doub 91 n n C4 C18 EPH sing 92 n n C18 C19 EPH sing 93 n n C18 H181 EPH sing 94 n n C18 H182 EPH sing 95 n n C19 C20 EPH sing 96 n n C19 H191 EPH sing 97 n n C19 H192 EPH sing 98 n n C20 C21 EPH sing 99 n n C20 H201 EPH sing 100 n n C20 H202 EPH sing 101 n n C21 C22 EPH sing 102 n n C21 H211 EPH sing 103 n n C21 H212 EPH sing 104 n n C22 C23 EPH sing 105 n n C22 H221 EPH sing 106 n n C22 H222 EPH sing 107 n n C23 C24 EPH sing 108 n n C23 H231 EPH sing 109 n n C23 H232 EPH sing 110 n n C24 C25 EPH doub 111 e n C24 H24 EPH sing 112 n n C25 C26 EPH sing 113 n n C25 H25 EPH sing 114 n n C26 C27 EPH sing 115 n n C26 H261 EPH sing 116 n n C26 H262 EPH sing 117 n n C27 C28 EPH sing 118 n n C27 H271 EPH sing 119 n n C27 H272 EPH sing 120 n n C28 C29 EPH doub 121 e n C28 H28 EPH sing 122 n n C29 C30 EPH sing 123 n n C29 H29 EPH sing 124 n n C30 C31 EPH sing 125 n n C30 H301 EPH sing 126 n n C30 H302 EPH sing 127 n n C31 C32 EPH sing 128 n n C31 H311 EPH sing 129 n n C31 H312 EPH sing 130 n n C32 C33 EPH doub 131 e n C32 H32 EPH sing 132 n n C33 C34 EPH sing 133 n n C33 H33 EPH sing 134 n n C34 H341 EPH sing 135 n n C34 H342 EPH sing 136 n n C34 H343 EPH sing 137 n n C37 O5 EPH sing 138 n n C37 H371 EPH sing 139 n n C37 H372 EPH sing 140 n n O5 P1 EPH sing 141 n n C3 O1 EPH sing 142 n n C3 O3 EPH doub 143 n n C3 C5 EPH sing 144 n n C5 C6 EPH sing 145 n n C5 H51 EPH sing 146 n n C5 H52 EPH sing 147 n n C6 C7 EPH sing 148 n n C6 H61 EPH sing 149 n n C6 H62 EPH sing 150 n n C7 C8 EPH sing 151 n n C7 H71 EPH sing 152 n n C7 H72 EPH sing 153 n n C8 C9 EPH sing 154 n n C8 H81 EPH sing 155 n n C8 H82 EPH sing 156 n n C9 C10 EPH sing 157 n n C9 H91 EPH sing 158 n n C9 H92 EPH sing 159 n n C10 C11 EPH sing 160 n n C10 H101 EPH sing 161 n n C10 H102 EPH sing 162 n n C11 C12 EPH sing 163 n n C11 H111 EPH sing 164 n n C11 H112 EPH sing 165 n n C12 C13 EPH doub 166 e n C12 H12 EPH sing 167 n n C13 C14 EPH sing 168 n n C13 H13 EPH sing 169 n n C14 C15 EPH sing 170 n n C14 H141 EPH sing 171 n n C14 H142 EPH sing 172 n n C15 C16 EPH doub 173 e n C15 H15 EPH sing 174 n n C16 C17 EPH sing 175 n n C16 H16 EPH sing 176 n n C17 C35 EPH sing 177 n n C17 H171 EPH sing 178 n n C17 H172 EPH sing 179 n n C35 C36 EPH sing 180 n n C35 H351 EPH sing 181 n n C35 H352 EPH sing 182 n n C36 H361 EPH sing 183 n n C36 H362 EPH sing 184 n n C36 H363 EPH sing 185 n n P1 O6 EPH sing 186 n n P1 O7 EPH doub 187 n n P1 O8 EPH sing 188 n n O6 HO6 EPH sing 189 n n O8 C38 EPH sing 190 n n C38 C39 EPH sing 191 n n C38 H381 EPH sing 192 n n C38 H382 EPH sing 193 n n C39 N1 EPH sing 194 n n C39 H391 EPH sing 195 n n C39 H392 EPH sing 196 n n N1 HN11 EPH sing 197 n n N1 HN12 EPH sing 198 n n # _atom_sites.entry_id 1R20 _atom_sites.fract_transf_matrix[1][1] 0.006692 _atom_sites.fract_transf_matrix[1][2] 0.003864 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPH A 1 4000 4000 EPH EPH . D 4 HWG D 1 2000 2000 HWG HWG . E 5 HOH A 1 1002 1002 HOH TIP . F 5 HOH D 1 1000 1000 HOH TIP . F 5 HOH D 2 1001 1001 HOH TIP . F 5 HOH D 3 1003 1003 HOH TIP . F 5 HOH D 4 1005 1005 HOH TIP . F 5 HOH D 5 1006 1006 HOH TIP . F 5 HOH D 6 1007 1007 HOH TIP . F 5 HOH D 7 1008 1008 HOH TIP . F 5 HOH D 8 1009 1009 HOH TIP . F 5 HOH D 9 1010 1010 HOH TIP . F 5 HOH D 10 1011 1011 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPH . . . C 3 28.803 45.061 16.274 1 88.51 ? C1 EPH 4000 A 1 HETATM 2 C C2 EPH . . . C 3 29.755 45.498 15.37 1 90.01 ? C2 EPH 4000 A 1 HETATM 3 C C4 EPH . . . C 3 28.384 45.44 18.712 1 85.88 ? C4 EPH 4000 A 1 HETATM 4 O O2 EPH . . . C 3 29.105 45.658 17.577 1 86.03 ? O2 EPH 4000 A 1 HETATM 5 O O4 EPH . . . C 3 27.402 44.724 18.808 1 86.89 ? O4 EPH 4000 A 1 HETATM 6 C C18 EPH . . . C 3 28.979 46.253 19.911 1 84.35 ? C18 EPH 4000 A 1 HETATM 7 C C19 EPH . . . C 3 28.866 45.571 21.285 1 81.97 ? C19 EPH 4000 A 1 HETATM 8 C C20 EPH . . . C 3 29.866 44.668 21.419 1 81.69 ? C20 EPH 4000 A 1 HETATM 9 C C21 EPH . . . C 3 30.003 43.919 22.538 1 81.43 ? C21 EPH 4000 A 1 HETATM 10 C C22 EPH . . . C 3 30.928 42.687 22.541 1 81.17 ? C22 EPH 4000 A 1 HETATM 11 C C23 EPH . . . C 3 32.283 42.962 22.327 1 80.56 ? C23 EPH 4000 A 1 HETATM 12 C C24 EPH . . . C 3 33.055 43.761 23.393 1 82.31 ? C24 EPH 4000 A 1 HETATM 13 C C25 EPH . . . C 3 34.471 44.219 22.947 1 82.54 ? C25 EPH 4000 A 1 HETATM 14 C C26 EPH . . . C 3 34.773 45.734 23.079 1 81.38 ? C26 EPH 4000 A 1 HETATM 15 C C27 EPH . . . C 3 36.179 46.043 23.632 1 81.13 ? C27 EPH 4000 A 1 HETATM 16 C C28 EPH . . . C 3 36.13 46.992 24.841 1 80.6 ? C28 EPH 4000 A 1 HETATM 17 C C29 EPH . . . C 3 36.871 46.473 26.074 1 80.31 ? C29 EPH 4000 A 1 HETATM 18 C C30 EPH . . . C 3 36.215 45.265 26.793 1 79.14 ? C30 EPH 4000 A 1 HETATM 19 C C31 EPH . . . C 3 36.635 45.006 28.263 1 80.14 ? C31 EPH 4000 A 1 HETATM 20 C C32 EPH . . . C 3 37.746 43.907 28.471 1 81.39 ? C32 EPH 4000 A 1 HETATM 21 C C33 EPH . . . C 3 38.325 43.173 27.223 1 80.75 ? C33 EPH 4000 A 1 HETATM 22 C C34 EPH . . . C 3 39.755 42.61 27.452 1 80.08 ? C34 EPH 4000 A 1 HETATM 23 C C37 EPH . . . C 3 29.511 44.947 13.93 1 93.75 ? C37 EPH 4000 A 1 HETATM 24 O O5 EPH . . . C 3 30.571 45.449 13.035 1 99.17 ? O5 EPH 4000 A 1 HETATM 25 C C3 EPH . . . C 3 31.965 46.014 16.074 1 87.16 ? C3 EPH 4000 A 1 HETATM 26 O O1 EPH . . . C 3 31.041 45.1 15.868 1 88.2 ? O1 EPH 4000 A 1 HETATM 27 O O3 EPH . . . C 3 31.817 47.185 15.898 1 87.83 ? O3 EPH 4000 A 1 HETATM 28 C C5 EPH . . . C 3 33.285 45.436 16.57 1 86.15 ? C5 EPH 4000 A 1 HETATM 29 C C6 EPH . . . C 3 33.77 46.112 17.841 1 85.01 ? C6 EPH 4000 A 1 HETATM 30 C C7 EPH . . . C 3 35.111 45.612 18.326 1 83.99 ? C7 EPH 4000 A 1 HETATM 31 C C8 EPH . . . C 3 35.061 44.648 19.47 1 82.45 ? C8 EPH 4000 A 1 HETATM 32 C C9 EPH . . . C 3 36.48 44.27 19.846 1 81.4 ? C9 EPH 4000 A 1 HETATM 33 C C10 EPH . . . C 3 36.601 42.91 20.467 1 80.52 ? C10 EPH 4000 A 1 HETATM 34 C C11 EPH . . . C 3 37.8 42.832 21.378 1 79.94 ? C11 EPH 4000 A 1 HETATM 35 C C12 EPH . . . C 3 37.829 41.518 22.118 1 80.59 ? C12 EPH 4000 A 1 HETATM 36 C C13 EPH . . . C 3 37.604 41.732 23.61 1 81.37 ? C13 EPH 4000 A 1 HETATM 37 C C14 EPH . . . C 3 38.195 40.589 24.443 1 82 ? C14 EPH 4000 A 1 HETATM 38 C C15 EPH . . . C 3 37.257 39.981 25.532 1 82.57 ? C15 EPH 4000 A 1 HETATM 39 C C16 EPH . . . C 3 36.371 38.793 25.068 1 82.2 ? C16 EPH 4000 A 1 HETATM 40 C C17 EPH . . . C 3 34.904 38.998 25.379 1 82.89 ? C17 EPH 4000 A 1 HETATM 41 C C35 EPH . . . C 3 34.355 40.196 24.594 1 84.3 ? C35 EPH 4000 A 1 HETATM 42 C C36 EPH . . . C 3 33.164 39.757 23.743 1 85.31 ? C36 EPH 4000 A 1 HETATM 43 P P1 EPH . . . C 3 30.438 44.982 11.544 1 101.06 ? P1 EPH 4000 A 1 HETATM 44 O O6 EPH . . . C 3 31.25 43.798 11.319 1 99.96 ? O6 EPH 4000 A 1 HETATM 45 O O7 EPH . . . C 3 31.565 45.778 11.152 1 100.45 ? O7 EPH 4000 A 1 HETATM 46 O O8 EPH . . . C 3 29.622 45.674 10.555 1 99.99 ? O8 EPH 4000 A 1 HETATM 47 C C38 EPH . . . C 3 28.558 44.735 9.957 1 100.25 ? C38 EPH 4000 A 1 HETATM 48 C C39 EPH . . . C 3 27.518 44.332 11.015 1 100.02 ? C39 EPH 4000 A 1 HETATM 49 N N1 EPH . . . C 3 27.877 43.01 11.568 1 98.96 ? N1 EPH 4000 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #