data_1R2C # _model_server_result.job_id zuOs6E-KtimF6nC9Lz7EDQ _model_server_result.datetime_utc '2024-11-23 11:21:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1201}' # _entry.id 1R2C # _exptl.entry_id 1R2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R2C _cell.length_a 223.5 _cell.length_b 223.5 _cell.length_c 112.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -56.25 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 87 C CYS 87 1_555 E CAB HEM . C HEM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale2 A SG CYS 90 C CYS 90 1_555 E CAC HEM . C HEM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale3 A SG CYS 132 C CYS 132 1_555 F CAB HEM . C HEM 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? covale ? covale4 A SG CYS 135 C CYS 135 1_555 F CAC HEM . C HEM 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? covale ? covale5 A SG CYS 244 C CYS 244 1_555 G CAB HEM . C HEM 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale6 A SG CYS 247 C CYS 247 1_555 G CAC HEM . C HEM 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale7 A SG CYS 305 C CYS 305 1_555 H CAB HEM . C HEM 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? covale ? covale8 A SG CYS 308 C CYS 308 1_555 H CAC HEM . C HEM 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale9 D C FME 1 H FME 1 1_555 D N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEM . C HEM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEM . C HEM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEM . C HEM 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEM . C HEM 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEM . C HEM 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEM . C HEM 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEM . C HEM 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEM . C HEM 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc9 B NE2 HIS 153 L HIS 153 1_555 J MG BCB . L BCB 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc10 B NE2 HIS 173 L HIS 173 1_555 I MG BCB . L BCB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc11 B NE2 HIS 190 L HIS 190 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc12 B NE2 HIS 230 L HIS 230 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc13 C NE2 HIS 180 M HIS 180 1_555 R MG BCB . M BCB 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc14 C NE2 HIS 200 M HIS 200 1_555 S MG BCB . M BCB 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc15 C NE2 HIS 217 M HIS 217 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc16 C CD GLU 232 M GLU 232 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc17 C OE1 GLU 232 M GLU 232 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc18 C OE2 GLU 232 M GLU 232 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc19 C NE2 HIS 264 M HIS 264 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 440 n n CHA C4D HEM doub 441 n n CHA HHA HEM sing 442 n n CHB C4A HEM sing 443 n n CHB C1B HEM doub 444 n n CHB HHB HEM sing 445 n n CHC C4B HEM sing 446 n n CHC C1C HEM doub 447 n n CHC HHC HEM sing 448 n n CHD C4C HEM doub 449 n n CHD C1D HEM sing 450 n n CHD HHD HEM sing 451 n n C1A C2A HEM doub 452 n y C1A NA HEM sing 453 n y C2A C3A HEM sing 454 n y C2A CAA HEM sing 455 n n C3A C4A HEM doub 456 n y C3A CMA HEM sing 457 n n C4A NA HEM sing 458 n y CMA HMA HEM sing 459 n n CMA HMAA HEM sing 460 n n CMA HMAB HEM sing 461 n n CAA CBA HEM sing 462 n n CAA HAA HEM sing 463 n n CAA HAAA HEM sing 464 n n CBA CGA HEM sing 465 n n CBA HBA HEM sing 466 n n CBA HBAA HEM sing 467 n n CGA O1A HEM doub 468 n n CGA O2A HEM sing 469 n n C1B C2B HEM sing 470 n n C1B NB HEM sing 471 n n C2B C3B HEM doub 472 n n C2B CMB HEM sing 473 n n C3B C4B HEM sing 474 n n C3B CAB HEM sing 475 n n C4B NB HEM doub 476 n n CMB HMB HEM sing 477 n n CMB HMBA HEM sing 478 n n CMB HMBB HEM sing 479 n n CAB CBB HEM doub 480 n n CAB HAB HEM sing 481 n n CBB HBB HEM sing 482 n n CBB HBBA HEM sing 483 n n C1C C2C HEM sing 484 n y C1C NC HEM sing 485 n y C2C C3C HEM doub 486 n y C2C CMC HEM sing 487 n n C3C C4C HEM sing 488 n y C3C CAC HEM sing 489 n n C4C NC HEM sing 490 n y CMC HMC HEM sing 491 n n CMC HMCA HEM sing 492 n n CMC HMCB HEM sing 493 n n CAC CBC HEM doub 494 n n CAC HAC HEM sing 495 n n CBC HBC HEM sing 496 n n CBC HBCA HEM sing 497 n n C1D C2D HEM sing 498 n n C1D ND HEM doub 499 n n C2D C3D HEM doub 500 n n C2D CMD HEM sing 501 n n C3D C4D HEM sing 502 n n C3D CAD HEM sing 503 n n C4D ND HEM sing 504 n n CMD HMD HEM sing 505 n n CMD HMDA HEM sing 506 n n CMD HMDB HEM sing 507 n n CAD CBD HEM sing 508 n n CAD HAD HEM sing 509 n n CAD HADA HEM sing 510 n n CBD CGD HEM sing 511 n n CBD HBD HEM sing 512 n n CBD HBDA HEM sing 513 n n CGD O1D HEM doub 514 n n CGD O2D HEM sing 515 n n O2A H2A HEM sing 516 n n O2D H2D HEM sing 517 n n FE NA HEM sing 518 n n FE NB HEM sing 519 n n FE NC HEM sing 520 n n FE ND HEM sing 521 n n # _atom_sites.entry_id 1R2C _atom_sites.fract_transf_matrix[1][1] 0.004474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM C 1 1201 1201 HEM HEM . F 5 HEM C 1 1202 1202 HEM HEM . G 5 HEM C 1 1203 1203 HEM HEM . H 5 HEM C 1 1204 1204 HEM HEM . I 6 BCB L 1 302 302 BCB BCB . J 6 BCB L 1 304 304 BCB BCB . K 7 BPB L 1 402 402 BPB BPB . L 8 UQ2 L 1 502 502 UQ2 UQ2 . M 9 LDA L 1 705 705 LDA LDA . N 10 FE2 M 1 500 500 FE2 FE2 . O 11 SO4 M 1 802 802 SO4 SO4 . P 11 SO4 M 1 803 803 SO4 SO4 . Q 11 SO4 M 1 804 804 SO4 SO4 . R 6 BCB M 1 1301 1301 BCB BCB . S 6 BCB M 1 1303 1303 BCB BCB . T 7 BPB M 1 401 401 BPB BPB . U 12 MQ7 M 1 501 501 MQ7 7MQ . V 13 NS5 M 1 600 600 NS5 NS5 . W 9 LDA M 1 701 701 LDA LDA . X 9 LDA M 1 702 702 LDA LDA . Y 9 LDA M 1 704 704 LDA LDA . Z 9 LDA M 1 706 706 LDA LDA . AA 11 SO4 H 1 801 801 SO4 SO4 . BA 9 LDA H 1 703 703 LDA LDA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 102.016 31.86 -18.225 1 53.04 ? CHA HEM 1201 C 1 HETATM 2 C CHB HEM . . . E 5 100.941 35.513 -15.211 1 50.95 ? CHB HEM 1201 C 1 HETATM 3 C CHC HEM . . . E 5 97.988 32.618 -12.711 1 49.09 ? CHC HEM 1201 C 1 HETATM 4 C CHD HEM . . . E 5 99.141 28.944 -15.648 1 51.22 ? CHD HEM 1201 C 1 HETATM 5 C C1A HEM . . . E 5 102.07 33.084 -17.547 1 52.85 ? C1A HEM 1201 C 1 HETATM 6 C C2A HEM . . . E 5 102.958 34.181 -17.865 1 53.85 ? C2A HEM 1201 C 1 HETATM 7 C C3A HEM . . . E 5 102.615 35.214 -17.07 1 52.99 ? C3A HEM 1201 C 1 HETATM 8 C C4A HEM . . . E 5 101.558 34.747 -16.197 1 51.9 ? C4A HEM 1201 C 1 HETATM 9 C CMA HEM . . . E 5 103.264 36.592 -17.123 1 51.53 ? CMA HEM 1201 C 1 HETATM 10 C CAA HEM . . . E 5 104.054 34.215 -18.909 1 56.93 ? CAA HEM 1201 C 1 HETATM 11 C CBA HEM . . . E 5 105.448 33.951 -18.388 1 61.14 ? CBA HEM 1201 C 1 HETATM 12 C CGA HEM . . . E 5 106.36 33.407 -19.468 1 63.76 ? CGA HEM 1201 C 1 HETATM 13 O O1A HEM . . . E 5 106.144 32.254 -19.9 1 65.39 ? O1A HEM 1201 C 1 HETATM 14 O O2A HEM . . . E 5 107.284 34.132 -19.89 1 64.76 ? O2A HEM 1201 C 1 HETATM 15 C C1B HEM . . . E 5 100.013 35.059 -14.282 1 49.59 ? C1B HEM 1201 C 1 HETATM 16 C C2B HEM . . . E 5 99.296 35.896 -13.345 1 48.94 ? C2B HEM 1201 C 1 HETATM 17 C C3B HEM . . . E 5 98.461 35.089 -12.653 1 48.6 ? C3B HEM 1201 C 1 HETATM 18 C C4B HEM . . . E 5 98.676 33.744 -13.14 1 48.74 ? C4B HEM 1201 C 1 HETATM 19 C CMB HEM . . . E 5 99.415 37.406 -13.155 1 47.94 ? CMB HEM 1201 C 1 HETATM 20 C CAB HEM . . . E 5 97.423 35.346 -11.546 1 47.04 ? CAB HEM 1201 C 1 HETATM 21 C CBB HEM . . . E 5 96.565 36.584 -11.776 1 47.6 ? CBB HEM 1201 C 1 HETATM 22 C C1C HEM . . . E 5 98.075 31.35 -13.268 1 50.23 ? C1C HEM 1201 C 1 HETATM 23 C C2C HEM . . . E 5 97.472 30.163 -12.71 1 50.25 ? C2C HEM 1201 C 1 HETATM 24 C C3C HEM . . . E 5 97.86 29.123 -13.482 1 49.3 ? C3C HEM 1201 C 1 HETATM 25 C C4C HEM . . . E 5 98.635 29.67 -14.574 1 49.7 ? C4C HEM 1201 C 1 HETATM 26 C CMC HEM . . . E 5 96.595 30.109 -11.461 1 48.77 ? CMC HEM 1201 C 1 HETATM 27 C CAC HEM . . . E 5 97.68 27.625 -13.371 1 49.91 ? CAC HEM 1201 C 1 HETATM 28 C CBC HEM . . . E 5 96.227 27.182 -13.291 1 48.16 ? CBC HEM 1201 C 1 HETATM 29 C C1D HEM . . . E 5 99.952 29.437 -16.664 1 51.72 ? C1D HEM 1201 C 1 HETATM 30 C C2D HEM . . . E 5 100.347 28.704 -17.845 1 52.32 ? C2D HEM 1201 C 1 HETATM 31 C C3D HEM . . . E 5 101.059 29.552 -18.618 1 52.69 ? C3D HEM 1201 C 1 HETATM 32 C C4D HEM . . . E 5 101.229 30.77 -17.858 1 52.46 ? C4D HEM 1201 C 1 HETATM 33 C CMD HEM . . . E 5 100.017 27.262 -18.2 1 52.11 ? CMD HEM 1201 C 1 HETATM 34 C CAD HEM . . . E 5 101.498 29.184 -20.038 1 53.5 ? CAD HEM 1201 C 1 HETATM 35 C CBD HEM . . . E 5 100.637 29.795 -21.145 1 54.52 ? CBD HEM 1201 C 1 HETATM 36 C CGD HEM . . . E 5 100.898 29.17 -22.512 1 54.54 ? CGD HEM 1201 C 1 HETATM 37 O O1D HEM . . . E 5 100.405 29.712 -23.527 1 53.34 ? O1D HEM 1201 C 1 HETATM 38 O O2D HEM . . . E 5 101.591 28.132 -22.567 1 54.41 ? O2D HEM 1201 C 1 HETATM 39 N NA HEM . . . E 5 101.313 33.413 -16.44 1 51.12 ? NA HEM 1201 C 1 HETATM 40 N NB HEM . . . E 5 99.588 33.753 -14.174 1 49.75 ? NB HEM 1201 C 1 HETATM 41 N NC HEM . . . E 5 98.834 31.016 -14.373 1 50.45 ? NC HEM 1201 C 1 HETATM 42 N ND HEM . . . E 5 100.428 30.726 -16.736 1 51.46 ? ND HEM 1201 C 1 HETATM 43 FE FE HEM . . . E 5 100.052 32.218 -15.442 1 50.63 ? FE HEM 1201 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #