data_1R2C # _model_server_result.job_id bpMEJMxm8xZZgI7fW-rwLA _model_server_result.datetime_utc '2024-11-13 07:53:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":600}' # _entry.id 1R2C # _exptl.entry_id 1R2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.904 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 15-cis-1,2-dihydroneurosporene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R2C _cell.length_a 223.5 _cell.length_b 223.5 _cell.length_c 112.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -56.25 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 87 C CYS 87 1_555 E CAB HEM . C HEM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale2 A SG CYS 90 C CYS 90 1_555 E CAC HEM . C HEM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale3 A SG CYS 132 C CYS 132 1_555 F CAB HEM . C HEM 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? covale ? covale4 A SG CYS 135 C CYS 135 1_555 F CAC HEM . C HEM 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? covale ? covale5 A SG CYS 244 C CYS 244 1_555 G CAB HEM . C HEM 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale6 A SG CYS 247 C CYS 247 1_555 G CAC HEM . C HEM 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale7 A SG CYS 305 C CYS 305 1_555 H CAB HEM . C HEM 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? covale ? covale8 A SG CYS 308 C CYS 308 1_555 H CAC HEM . C HEM 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale9 D C FME 1 H FME 1 1_555 D N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEM . C HEM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEM . C HEM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEM . C HEM 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEM . C HEM 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEM . C HEM 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEM . C HEM 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEM . C HEM 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEM . C HEM 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc9 B NE2 HIS 153 L HIS 153 1_555 J MG BCB . L BCB 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc10 B NE2 HIS 173 L HIS 173 1_555 I MG BCB . L BCB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc11 B NE2 HIS 190 L HIS 190 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc12 B NE2 HIS 230 L HIS 230 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc13 C NE2 HIS 180 M HIS 180 1_555 R MG BCB . M BCB 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc14 C NE2 HIS 200 M HIS 200 1_555 S MG BCB . M BCB 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc15 C NE2 HIS 217 M HIS 217 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc16 C CD GLU 232 M GLU 232 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc17 C OE1 GLU 232 M GLU 232 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc18 C OE2 GLU 232 M GLU 232 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc19 C NE2 HIS 264 M HIS 264 1_555 N FE FE2 . M FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C40 H60' _chem_comp.formula_weight 540.904 _chem_comp.id NS5 _chem_comp.mon_nstd_flag . _chem_comp.name 15-cis-1,2-dihydroneurosporene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CM1 NS5 sing 787 n n C1 CM2 NS5 sing 788 n n C1 C2 NS5 sing 789 n n C1 H1 NS5 sing 790 n n CM1 HM11 NS5 sing 791 n n CM1 HM12 NS5 sing 792 n n CM1 HM13 NS5 sing 793 n n CM2 HM21 NS5 sing 794 n n CM2 HM22 NS5 sing 795 n n CM2 HM23 NS5 sing 796 n n C2 C3 NS5 sing 797 n n C2 H21 NS5 sing 798 n n C2 H22 NS5 sing 799 n n C3 C4 NS5 sing 800 n n C3 H31 NS5 sing 801 n n C3 H32 NS5 sing 802 n n C4 C5 NS5 sing 803 n n C4 H41 NS5 sing 804 n n C4 H42 NS5 sing 805 n n C5 C6 NS5 sing 806 n n C5 C7 NS5 doub 807 e n C6 H61 NS5 sing 808 n n C6 H62 NS5 sing 809 n n C6 H63 NS5 sing 810 n n C7 C8 NS5 sing 811 n n C7 H7 NS5 sing 812 n n C8 C9 NS5 sing 813 n n C8 H81 NS5 sing 814 n n C8 H82 NS5 sing 815 n n C9 C10 NS5 sing 816 n n C9 H91 NS5 sing 817 n n C9 H92 NS5 sing 818 n n C10 C11 NS5 sing 819 n n C10 C12 NS5 doub 820 e n C11 H111 NS5 sing 821 n n C11 H112 NS5 sing 822 n n C11 H113 NS5 sing 823 n n C12 C13 NS5 sing 824 n n C12 H12 NS5 sing 825 n n C13 C14 NS5 doub 826 e n C13 H13 NS5 sing 827 n n C14 C15 NS5 sing 828 n n C14 H14 NS5 sing 829 n n C15 C16 NS5 sing 830 n n C15 C17 NS5 doub 831 e n C16 H161 NS5 sing 832 n n C16 H162 NS5 sing 833 n n C16 H163 NS5 sing 834 n n C17 C18 NS5 sing 835 n n C17 H17 NS5 sing 836 n n C18 C19 NS5 doub 837 z n C18 H18 NS5 sing 838 n n C19 C20 NS5 sing 839 n n C19 H19 NS5 sing 840 n n C20 C21 NS5 doub 841 e n C20 H20 NS5 sing 842 n n C21 C22 NS5 sing 843 n n C21 C23 NS5 sing 844 n n C22 H221 NS5 sing 845 n n C22 H222 NS5 sing 846 n n C22 H223 NS5 sing 847 n n C23 C24 NS5 doub 848 e n C23 H23 NS5 sing 849 n n C24 C25 NS5 sing 850 n n C24 H24 NS5 sing 851 n n C25 C26 NS5 doub 852 e n C25 H25 NS5 sing 853 n n C26 C27 NS5 sing 854 n n C26 C28 NS5 sing 855 n n C27 H271 NS5 sing 856 n n C27 H272 NS5 sing 857 n n C27 H273 NS5 sing 858 n n C28 C29 NS5 doub 859 e n C28 H28 NS5 sing 860 n n C29 C30 NS5 sing 861 n n C29 H29 NS5 sing 862 n n C30 C31 NS5 doub 863 e n C30 H30 NS5 sing 864 n n C31 C32 NS5 sing 865 n n C31 C33 NS5 sing 866 n n C32 H321 NS5 sing 867 n n C32 H322 NS5 sing 868 n n C32 H323 NS5 sing 869 n n C33 C34 NS5 sing 870 n n C33 H331 NS5 sing 871 n n C33 H332 NS5 sing 872 n n C34 C35 NS5 sing 873 n n C34 H341 NS5 sing 874 n n C34 H342 NS5 sing 875 n n C35 C36 NS5 doub 876 n n C35 H351 NS5 sing 877 n n C36 CM3 NS5 sing 878 n n C36 CM4 NS5 sing 879 n n CM3 HM31 NS5 sing 880 n n CM3 HM32 NS5 sing 881 n n CM3 HM33 NS5 sing 882 n n CM4 HM41 NS5 sing 883 n n CM4 HM42 NS5 sing 884 n n CM4 HM43 NS5 sing 885 n n # _atom_sites.entry_id 1R2C _atom_sites.fract_transf_matrix[1][1] 0.004474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM C 1 1201 1201 HEM HEM . F 5 HEM C 1 1202 1202 HEM HEM . G 5 HEM C 1 1203 1203 HEM HEM . H 5 HEM C 1 1204 1204 HEM HEM . I 6 BCB L 1 302 302 BCB BCB . J 6 BCB L 1 304 304 BCB BCB . K 7 BPB L 1 402 402 BPB BPB . L 8 UQ2 L 1 502 502 UQ2 UQ2 . M 9 LDA L 1 705 705 LDA LDA . N 10 FE2 M 1 500 500 FE2 FE2 . O 11 SO4 M 1 802 802 SO4 SO4 . P 11 SO4 M 1 803 803 SO4 SO4 . Q 11 SO4 M 1 804 804 SO4 SO4 . R 6 BCB M 1 1301 1301 BCB BCB . S 6 BCB M 1 1303 1303 BCB BCB . T 7 BPB M 1 401 401 BPB BPB . U 12 MQ7 M 1 501 501 MQ7 7MQ . V 13 NS5 M 1 600 600 NS5 NS5 . W 9 LDA M 1 701 701 LDA LDA . X 9 LDA M 1 702 702 LDA LDA . Y 9 LDA M 1 704 704 LDA LDA . Z 9 LDA M 1 706 706 LDA LDA . AA 11 SO4 H 1 801 801 SO4 SO4 . BA 9 LDA H 1 703 703 LDA LDA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NS5 . . . V 13 59.04 -13.454 2.859 0 60.27 ? C1 NS5 600 M 1 HETATM 2 C CM1 NS5 . . . V 13 59.054 -13.779 4.346 0 60.1 ? CM1 NS5 600 M 1 HETATM 3 C CM2 NS5 . . . V 13 58.85 -14.715 2.029 0 60.1 ? CM2 NS5 600 M 1 HETATM 4 C C2 NS5 . . . V 13 60.31 -12.706 2.442 0 60.52 ? C2 NS5 600 M 1 HETATM 5 C C3 NS5 . . . V 13 61.603 -13.469 2.694 0 61.01 ? C3 NS5 600 M 1 HETATM 6 C C4 NS5 . . . V 13 62.812 -12.659 2.252 0 61.59 ? C4 NS5 600 M 1 HETATM 7 C C5 NS5 . . . V 13 64.103 -13.344 2.524 0 62.15 ? C5 NS5 600 M 1 HETATM 8 C C6 NS5 . . . V 13 64.715 -13.04 3.844 0 62.05 ? C6 NS5 600 M 1 HETATM 9 C C7 NS5 . . . V 13 64.575 -14.307 1.71 0 62.79 ? C7 NS5 600 M 1 HETATM 10 C C8 NS5 . . . V 13 65.946 -14.898 1.82 1 63.78 ? C8 NS5 600 M 1 HETATM 11 C C9 NS5 . . . V 13 67.055 -13.932 1.35 1 64.52 ? C9 NS5 600 M 1 HETATM 12 C C10 NS5 . . . V 13 67.298 -13.987 -0.156 1 63.76 ? C10 NS5 600 M 1 HETATM 13 C C11 NS5 . . . V 13 68.301 -14.997 -0.585 1 64.03 ? C11 NS5 600 M 1 HETATM 14 C C12 NS5 . . . V 13 66.814 -13.022 -0.975 1 60.72 ? C12 NS5 600 M 1 HETATM 15 C C13 NS5 . . . V 13 66.584 -13.075 -2.418 1 58.07 ? C13 NS5 600 M 1 HETATM 16 C C14 NS5 . . . V 13 65.696 -13.859 -3.068 1 54.87 ? C14 NS5 600 M 1 HETATM 17 C C15 NS5 . . . V 13 65.005 -13.493 -4.334 1 54.03 ? C15 NS5 600 M 1 HETATM 18 C C16 NS5 . . . V 13 63.962 -12.425 -4.174 1 51.91 ? C16 NS5 600 M 1 HETATM 19 C C17 NS5 . . . V 13 65.122 -14.226 -5.466 1 53.36 ? C17 NS5 600 M 1 HETATM 20 C C18 NS5 . . . V 13 64.375 -14.033 -6.71 1 50.66 ? C18 NS5 600 M 1 HETATM 21 C C19 NS5 . . . V 13 64.412 -14.719 -7.876 1 49.57 ? C19 NS5 600 M 1 HETATM 22 C C20 NS5 . . . V 13 65.301 -15.824 -8.272 1 46.52 ? C20 NS5 600 M 1 HETATM 23 C C21 NS5 . . . V 13 65.034 -16.708 -9.268 1 44.65 ? C21 NS5 600 M 1 HETATM 24 C C22 NS5 . . . V 13 63.681 -16.831 -9.916 1 43.36 ? C22 NS5 600 M 1 HETATM 25 C C23 NS5 . . . V 13 66.067 -17.67 -9.717 1 42.55 ? C23 NS5 600 M 1 HETATM 26 C C24 NS5 . . . V 13 65.852 -18.759 -10.486 1 41.1 ? C24 NS5 600 M 1 HETATM 27 C C25 NS5 . . . V 13 66.866 -19.716 -10.932 1 40.59 ? C25 NS5 600 M 1 HETATM 28 C C26 NS5 . . . V 13 66.692 -21.006 -11.3 1 40.62 ? C26 NS5 600 M 1 HETATM 29 C C27 NS5 . . . V 13 65.35 -21.623 -11.46 1 39.91 ? C27 NS5 600 M 1 HETATM 30 C C28 NS5 . . . V 13 67.834 -21.824 -11.738 1 42.58 ? C28 NS5 600 M 1 HETATM 31 C C29 NS5 . . . V 13 67.793 -23.157 -11.943 1 46.24 ? C29 NS5 600 M 1 HETATM 32 C C30 NS5 . . . V 13 68.9 -23.998 -12.385 1 50.54 ? C30 NS5 600 M 1 HETATM 33 C C31 NS5 . . . V 13 68.885 -25.318 -12.696 1 54.57 ? C31 NS5 600 M 1 HETATM 34 C C32 NS5 . . . V 13 67.63 -26.123 -12.808 1 53.13 ? C32 NS5 600 M 1 HETATM 35 C C33 NS5 . . . V 13 70.095 -25.947 -13.339 1 58.37 ? C33 NS5 600 M 1 HETATM 36 C C34 NS5 . . . V 13 71.242 -26.155 -12.35 1 63.85 ? C34 NS5 600 M 1 HETATM 37 C C35 NS5 . . . V 13 72.519 -26.623 -13.022 1 67.09 ? C35 NS5 600 M 1 HETATM 38 C C36 NS5 . . . V 13 72.757 -27.881 -13.453 1 68.18 ? C36 NS5 600 M 1 HETATM 39 C CM3 NS5 . . . V 13 74.021 -28.259 -14.132 0 67.77 ? CM3 NS5 600 M 1 HETATM 40 C CM4 NS5 . . . V 13 71.798 -28.996 -13.247 0 67.77 ? CM4 NS5 600 M 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #