data_1R30 # _model_server_result.job_id YVAZoUCewOdhleIJpI-7Og _model_server_result.datetime_utc '2024-11-22 14:56:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1R30 # _exptl.entry_id 1R30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R30 _cell.length_a 155.69 _cell.length_b 155.69 _cell.length_c 90.88 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 76 A CYS 53 1_555 D FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A SG CYS 80 A CYS 57 1_555 D FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A SG CYS 83 A CYS 60 1_555 D FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A SG CYS 120 A CYS 97 1_555 E FE2 FES . A FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 A SG CYS 151 A CYS 128 1_555 E FE2 FES . A FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 A SG CYS 211 A CYS 188 1_555 E FE1 FES . A FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 A NH1 ARG 283 A ARG 260 1_555 E FE1 FES . A FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc8 A NH2 ARG 283 A ARG 260 1_555 E FE1 FES . A FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc9 D FE2 SF4 . A SF4 401 1_555 C N SAM . A SAM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc10 D FE2 SF4 . A SF4 401 1_555 C O SAM . A SAM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc11 B SG CYS 76 B CYS 53 1_555 I FE4 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc12 B SG CYS 80 B CYS 57 1_555 I FE1 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc13 B SG CYS 83 B CYS 60 1_555 I FE3 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc14 B SG CYS 120 B CYS 97 1_555 J FE2 FES . B FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc15 B SG CYS 151 B CYS 128 1_555 J FE2 FES . B FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc16 B SG CYS 211 B CYS 188 1_555 J FE1 FES . B FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc17 B NH1 ARG 283 B ARG 260 1_555 J FE1 FES . B FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc18 B NH2 ARG 283 B ARG 260 1_555 J FE1 FES . B FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc19 I FE2 SF4 . B SF4 401 1_555 H N SAM . B SAM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc20 I FE2 SF4 . B SF4 401 1_555 H O SAM . B SAM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.194 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 312 n n N HN1 SAM sing 313 n n N HN2 SAM sing 314 n n CA C SAM sing 315 n n CA CB SAM sing 316 n n CA HA SAM sing 317 n n C O SAM doub 318 n n C OXT SAM sing 319 n n CB CG SAM sing 320 n n CB HB1 SAM sing 321 n n CB HB2 SAM sing 322 n n CG SD SAM sing 323 n n CG HG1 SAM sing 324 n n CG HG2 SAM sing 325 n n SD CE SAM sing 326 n n SD C5' SAM sing 327 n n CE HE1 SAM sing 328 n n CE HE2 SAM sing 329 n n CE HE3 SAM sing 330 n n C5' C4' SAM sing 331 n n C5' "H5'1" SAM sing 332 n n C5' "H5'2" SAM sing 333 n n C4' O4' SAM sing 334 n n C4' C3' SAM sing 335 n n C4' H4' SAM sing 336 n n O4' C1' SAM sing 337 n n C3' O3' SAM sing 338 n n C3' C2' SAM sing 339 n n C3' H3' SAM sing 340 n n O3' HO3' SAM sing 341 n n C2' O2' SAM sing 342 n n C2' C1' SAM sing 343 n n C2' H2' SAM sing 344 n n O2' HO2' SAM sing 345 n n C1' N9 SAM sing 346 n n C1' H1' SAM sing 347 n n N9 C8 SAM sing 348 n y N9 C4 SAM sing 349 n y C8 N7 SAM doub 350 n y C8 H8 SAM sing 351 n n N7 C5 SAM sing 352 n y C5 C6 SAM sing 353 n y C5 C4 SAM doub 354 n y C6 N6 SAM sing 355 n n C6 N1 SAM doub 356 n y N6 HN61 SAM sing 357 n n N6 HN62 SAM sing 358 n n N1 C2 SAM sing 359 n y C2 N3 SAM doub 360 n y C2 H2 SAM sing 361 n n N3 C4 SAM sing 362 n y # _atom_sites.entry_id 1R30 _atom_sites.fract_transf_matrix[1][1] 0.006423 _atom_sites.fract_transf_matrix[1][2] 0.003708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 501 501 SAM SAM . D 3 SF4 A 1 401 401 SF4 FS4 . E 4 FES A 1 402 402 FES FS2 . F 5 DTB A 1 502 502 DTB DTB . G 6 TRS A 1 503 503 TRS TRI . H 2 SAM B 1 501 501 SAM SAM . I 3 SF4 B 1 401 401 SF4 FS4 . J 4 FES B 1 402 402 FES FS2 . K 5 DTB B 1 502 502 DTB DTB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 2 62.934 56.061 34.854 1 130.55 ? N SAM 501 A 1 HETATM 2 C CA SAM . . . C 2 63.379 56.737 36.087 1 130.55 ? CA SAM 501 A 1 HETATM 3 C C SAM . . . C 2 62.353 57.791 36.492 1 130.55 ? C SAM 501 A 1 HETATM 4 O O SAM . . . C 2 62.224 58.779 35.733 1 130.55 ? O SAM 501 A 1 HETATM 5 O OXT SAM . . . C 2 61.739 57.6 37.563 1 130.55 ? OXT SAM 501 A 1 HETATM 6 C CB SAM . . . C 2 64.69 57.456 35.831 1 130.55 ? CB SAM 501 A 1 HETATM 7 C CG SAM . . . C 2 65.766 56.482 35.404 1 130.55 ? CG SAM 501 A 1 HETATM 8 S SD SAM . . . C 2 67.169 57.533 34.954 1 130.55 ? SD SAM 501 A 1 HETATM 9 C CE SAM . . . C 2 68.543 56.519 34.335 1 130.55 ? CE SAM 501 A 1 HETATM 10 C C5' SAM . . . C 2 67.71 58.487 36.402 1 84.6 ? C5' SAM 501 A 1 HETATM 11 C C4' SAM . . . C 2 68.469 59.747 35.999 1 84.6 ? C4' SAM 501 A 1 HETATM 12 O O4' SAM . . . C 2 69.481 59.467 35.032 1 84.6 ? O4' SAM 501 A 1 HETATM 13 C C3' SAM . . . C 2 67.603 60.692 35.232 1 84.6 ? C3' SAM 501 A 1 HETATM 14 O O3' SAM . . . C 2 66.559 61.283 36.031 1 84.6 ? O3' SAM 501 A 1 HETATM 15 C C2' SAM . . . C 2 68.637 61.689 34.777 1 84.6 ? C2' SAM 501 A 1 HETATM 16 O O2' SAM . . . C 2 68.929 62.587 35.849 1 84.6 ? O2' SAM 501 A 1 HETATM 17 C C1' SAM . . . C 2 69.86 60.779 34.514 1 84.6 ? C1' SAM 501 A 1 HETATM 18 N N9 SAM . . . C 2 70.139 60.622 33.073 1 68.35 ? N9 SAM 501 A 1 HETATM 19 C C8 SAM . . . C 2 69.616 59.691 32.268 1 68.35 ? C8 SAM 501 A 1 HETATM 20 N N7 SAM . . . C 2 70.091 59.868 31.035 1 68.35 ? N7 SAM 501 A 1 HETATM 21 C C5 SAM . . . C 2 70.908 60.903 31.062 1 68.35 ? C5 SAM 501 A 1 HETATM 22 C C6 SAM . . . C 2 71.667 61.543 30.099 1 76.31 ? C6 SAM 501 A 1 HETATM 23 N N6 SAM . . . C 2 71.663 61.1 28.852 1 68.35 ? N6 SAM 501 A 1 HETATM 24 N N1 SAM . . . C 2 72.42 62.613 30.443 1 68.35 ? N1 SAM 501 A 1 HETATM 25 C C2 SAM . . . C 2 72.44 63.059 31.704 1 68.35 ? C2 SAM 501 A 1 HETATM 26 N N3 SAM . . . C 2 71.711 62.45 32.65 1 68.35 ? N3 SAM 501 A 1 HETATM 27 C C4 SAM . . . C 2 70.942 61.382 32.35 1 68.35 ? C4 SAM 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #