data_1R3I # _model_server_result.job_id B5A4svnwC9nD2bT6x_7XDA _model_server_result.datetime_utc '2024-11-28 11:07:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 1R3I # _exptl.entry_id 1R3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 85.468 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUBIDIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R3I _cell.length_a 155.84 _cell.length_b 155.84 _cell.length_c 75.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 311.68 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 311.68 0 0 4 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 311.68 311.68 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? disulf ? disulf2 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc1 C O THR 75 C THR 75 1_555 F RB RB . C RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? metalc ? metalc2 C O THR 75 C THR 75 4_575 F RB RB . C RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc3 C O THR 75 C THR 75 3_755 F RB RB . C RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.158 ? metalc ? metalc4 C O THR 75 C THR 75 2_775 F RB RB . C RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? metalc ? metalc5 C O THR 75 C THR 75 1_555 G RB RB . C RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc6 C OG1 THR 75 C THR 75 1_555 G RB RB . C RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc7 C OG1 THR 75 C THR 75 4_575 G RB RB . C RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? metalc ? metalc8 C O THR 75 C THR 75 4_575 G RB RB . C RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc9 C OG1 THR 75 C THR 75 3_755 G RB RB . C RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc10 C O THR 75 C THR 75 3_755 G RB RB . C RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc11 C OG1 THR 75 C THR 75 2_775 G RB RB . C RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? metalc ? metalc12 C O THR 75 C THR 75 2_775 G RB RB . C RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? metalc ? metalc13 C O VAL 76 C VAL 76 1_555 F RB RB . C RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc14 C O VAL 76 C VAL 76 4_575 F RB RB . C RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc15 C O VAL 76 C VAL 76 3_755 F RB RB . C RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc16 C O VAL 76 C VAL 76 2_775 F RB RB . C RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc17 C O GLY 77 C GLY 77 1_555 E RB RB . C RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? metalc ? metalc18 C O GLY 77 C GLY 77 4_575 E RB RB . C RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc19 C O GLY 77 C GLY 77 3_755 E RB RB . C RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc20 C O GLY 77 C GLY 77 2_775 E RB RB . C RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc21 C O TYR 78 C TYR 78 1_555 E RB RB . C RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc22 C O TYR 78 C TYR 78 4_575 E RB RB . C RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc23 C O TYR 78 C TYR 78 3_755 E RB RB . C RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc24 C O TYR 78 C TYR 78 2_775 E RB RB . C RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc25 F RB RB . C RB 202 1_555 G RB RB . C RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.785 ? metalc ? metalc26 F RB RB . C RB 202 1_555 G RB RB . C RB 203 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.785 ? metalc ? metalc27 F RB RB . C RB 202 1_555 G RB RB . C RB 203 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.785 ? metalc ? metalc28 F RB RB . C RB 202 1_555 G RB RB . C RB 203 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 3.785 ? metalc ? metalc29 H RB RB . C RB 204 1_555 L O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.574 ? metalc ? metalc30 H RB RB . C RB 204 1_555 L O HOH . C HOH 302 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.582 ? metalc ? metalc31 H RB RB . C RB 204 1_555 L O HOH . C HOH 302 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 3.574 ? metalc ? metalc32 H RB RB . C RB 204 1_555 L O HOH . C HOH 302 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.582 ? metalc ? metalc33 H RB RB . C RB 204 1_555 L O HOH . C HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.602 ? metalc ? metalc34 H RB RB . C RB 204 1_555 L O HOH . C HOH 306 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 3.615 ? metalc ? metalc35 H RB RB . C RB 204 1_555 L O HOH . C HOH 306 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 3.608 ? metalc ? metalc36 H RB RB . C RB 204 1_555 L O HOH . C HOH 306 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.608 ? # _chem_comp.formula 'Rb 1' _chem_comp.formula_weight 85.468 _chem_comp.id RB _chem_comp.mon_nstd_flag . _chem_comp.name 'RUBIDIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1R3I _atom_sites.fract_transf_matrix[1][1] 0.006417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 H 1 401 401 F09 F09 . E 5 RB C 1 201 201 RB RB . F 5 RB C 1 202 202 RB RB . G 5 RB C 1 203 203 RB RB . H 5 RB C 1 204 204 RB RB . I 6 DGA C 1 301 301 DGA DGA . J 7 HOH L 1 213 2 HOH TIP . J 7 HOH L 2 214 3 HOH TIP . J 7 HOH L 3 215 5 HOH TIP . J 7 HOH L 4 216 6 HOH TIP . J 7 HOH L 5 217 8 HOH TIP . J 7 HOH L 6 218 10 HOH TIP . J 7 HOH L 7 219 11 HOH TIP . J 7 HOH L 8 220 12 HOH TIP . J 7 HOH L 9 221 16 HOH TIP . J 7 HOH L 10 222 18 HOH TIP . J 7 HOH L 11 223 21 HOH TIP . J 7 HOH L 12 224 22 HOH TIP . J 7 HOH L 13 225 23 HOH TIP . J 7 HOH L 14 226 25 HOH TIP . J 7 HOH L 15 227 27 HOH TIP . J 7 HOH L 16 228 29 HOH TIP . J 7 HOH L 17 229 31 HOH TIP . J 7 HOH L 18 230 33 HOH TIP . J 7 HOH L 19 231 34 HOH TIP . J 7 HOH L 20 232 35 HOH TIP . J 7 HOH L 21 233 37 HOH TIP . J 7 HOH L 22 234 41 HOH TIP . J 7 HOH L 23 235 43 HOH TIP . J 7 HOH L 24 236 44 HOH TIP . J 7 HOH L 25 237 48 HOH TIP . J 7 HOH L 26 238 51 HOH TIP . J 7 HOH L 27 239 55 HOH TIP . J 7 HOH L 28 240 59 HOH TIP . J 7 HOH L 29 241 61 HOH TIP . J 7 HOH L 30 242 62 HOH TIP . J 7 HOH L 31 243 66 HOH TIP . J 7 HOH L 32 244 67 HOH TIP . J 7 HOH L 33 245 68 HOH TIP . J 7 HOH L 34 246 69 HOH TIP . J 7 HOH L 35 247 70 HOH TIP . J 7 HOH L 36 248 77 HOH TIP . J 7 HOH L 37 249 79 HOH TIP . J 7 HOH L 38 250 83 HOH TIP . J 7 HOH L 39 251 84 HOH TIP . J 7 HOH L 40 252 93 HOH TIP . J 7 HOH L 41 253 94 HOH TIP . J 7 HOH L 42 254 95 HOH TIP . J 7 HOH L 43 255 96 HOH TIP . J 7 HOH L 44 256 97 HOH TIP . J 7 HOH L 45 257 98 HOH TIP . J 7 HOH L 46 258 103 HOH TIP . J 7 HOH L 47 259 104 HOH TIP . J 7 HOH L 48 260 105 HOH TIP . J 7 HOH L 49 261 108 HOH TIP . J 7 HOH L 50 262 109 HOH TIP . J 7 HOH L 51 263 111 HOH TIP . J 7 HOH L 52 264 117 HOH TIP . J 7 HOH L 53 265 118 HOH TIP . J 7 HOH L 54 266 119 HOH TIP . J 7 HOH L 55 267 121 HOH TIP . J 7 HOH L 56 268 124 HOH TIP . J 7 HOH L 57 269 129 HOH TIP . J 7 HOH L 58 270 132 HOH TIP . J 7 HOH L 59 271 133 HOH TIP . J 7 HOH L 60 272 134 HOH TIP . J 7 HOH L 61 273 136 HOH TIP . J 7 HOH L 62 274 140 HOH TIP . J 7 HOH L 63 275 141 HOH TIP . J 7 HOH L 64 276 143 HOH TIP . J 7 HOH L 65 277 152 HOH TIP . J 7 HOH L 66 278 153 HOH TIP . J 7 HOH L 67 279 161 HOH TIP . J 7 HOH L 68 280 167 HOH TIP . J 7 HOH L 69 281 170 HOH TIP . K 7 HOH H 1 402 1 HOH TIP . K 7 HOH H 2 403 7 HOH TIP . K 7 HOH H 3 404 13 HOH TIP . K 7 HOH H 4 405 14 HOH TIP . K 7 HOH H 5 406 15 HOH TIP . K 7 HOH H 6 407 19 HOH TIP . K 7 HOH H 7 408 24 HOH TIP . K 7 HOH H 8 409 32 HOH TIP . K 7 HOH H 9 410 38 HOH TIP . K 7 HOH H 10 411 39 HOH TIP . K 7 HOH H 11 412 42 HOH TIP . K 7 HOH H 12 413 46 HOH TIP . K 7 HOH H 13 414 47 HOH TIP . K 7 HOH H 14 415 49 HOH TIP . K 7 HOH H 15 416 50 HOH TIP . K 7 HOH H 16 417 52 HOH TIP . K 7 HOH H 17 418 56 HOH TIP . K 7 HOH H 18 419 58 HOH TIP . K 7 HOH H 19 420 60 HOH TIP . K 7 HOH H 20 421 63 HOH TIP . K 7 HOH H 21 422 64 HOH TIP . K 7 HOH H 22 423 65 HOH TIP . K 7 HOH H 23 424 71 HOH TIP . K 7 HOH H 24 425 72 HOH TIP . K 7 HOH H 25 426 73 HOH TIP . K 7 HOH H 26 427 74 HOH TIP . K 7 HOH H 27 428 75 HOH TIP . K 7 HOH H 28 429 78 HOH TIP . K 7 HOH H 29 430 80 HOH TIP . K 7 HOH H 30 431 82 HOH TIP . K 7 HOH H 31 432 86 HOH TIP . K 7 HOH H 32 433 87 HOH TIP . K 7 HOH H 33 434 88 HOH TIP . K 7 HOH H 34 435 90 HOH TIP . K 7 HOH H 35 436 91 HOH TIP . K 7 HOH H 36 437 92 HOH TIP . K 7 HOH H 37 438 99 HOH TIP . K 7 HOH H 38 439 100 HOH TIP . K 7 HOH H 39 440 102 HOH TIP . K 7 HOH H 40 441 106 HOH TIP . K 7 HOH H 41 442 110 HOH TIP . K 7 HOH H 42 443 114 HOH TIP . K 7 HOH H 43 444 115 HOH TIP . K 7 HOH H 44 445 116 HOH TIP . K 7 HOH H 45 446 120 HOH TIP . K 7 HOH H 46 447 122 HOH TIP . K 7 HOH H 47 448 123 HOH TIP . K 7 HOH H 48 449 125 HOH TIP . K 7 HOH H 49 450 126 HOH TIP . K 7 HOH H 50 451 127 HOH TIP . K 7 HOH H 51 452 128 HOH TIP . K 7 HOH H 52 453 130 HOH TIP . K 7 HOH H 53 454 131 HOH TIP . K 7 HOH H 54 455 135 HOH TIP . K 7 HOH H 55 456 138 HOH TIP . K 7 HOH H 56 457 139 HOH TIP . K 7 HOH H 57 458 142 HOH TIP . K 7 HOH H 58 459 144 HOH TIP . K 7 HOH H 59 460 147 HOH TIP . K 7 HOH H 60 461 148 HOH TIP . K 7 HOH H 61 462 149 HOH TIP . K 7 HOH H 62 463 150 HOH TIP . K 7 HOH H 63 464 151 HOH TIP . K 7 HOH H 64 465 154 HOH TIP . K 7 HOH H 65 466 156 HOH TIP . K 7 HOH H 66 467 157 HOH TIP . K 7 HOH H 67 468 158 HOH TIP . K 7 HOH H 68 469 159 HOH TIP . K 7 HOH H 69 470 160 HOH TIP . K 7 HOH H 70 471 162 HOH TIP . K 7 HOH H 71 472 163 HOH TIP . K 7 HOH H 72 473 165 HOH TIP . K 7 HOH H 73 474 166 HOH TIP . K 7 HOH H 74 475 169 HOH TIP . K 7 HOH H 75 476 171 HOH TIP . K 7 HOH H 76 477 172 HOH TIP . L 7 HOH C 1 302 4 HOH TIP . L 7 HOH C 2 303 9 HOH TIP . L 7 HOH C 3 304 17 HOH TIP . L 7 HOH C 4 305 20 HOH TIP . L 7 HOH C 5 306 26 HOH TIP . L 7 HOH C 6 307 28 HOH TIP . L 7 HOH C 7 308 30 HOH TIP . L 7 HOH C 8 309 36 HOH TIP . L 7 HOH C 9 310 40 HOH TIP . L 7 HOH C 10 311 45 HOH TIP . L 7 HOH C 11 312 53 HOH TIP . L 7 HOH C 12 313 54 HOH TIP . L 7 HOH C 13 314 57 HOH TIP . L 7 HOH C 14 315 76 HOH TIP . L 7 HOH C 15 316 81 HOH TIP . L 7 HOH C 16 317 85 HOH TIP . L 7 HOH C 17 318 89 HOH TIP . L 7 HOH C 18 319 101 HOH TIP . L 7 HOH C 19 320 107 HOH TIP . L 7 HOH C 20 321 112 HOH TIP . L 7 HOH C 21 322 113 HOH TIP . L 7 HOH C 22 323 137 HOH TIP . L 7 HOH C 23 324 145 HOH TIP . L 7 HOH C 24 325 146 HOH TIP . L 7 HOH C 25 326 155 HOH TIP . L 7 HOH C 26 327 164 HOH TIP . L 7 HOH C 27 328 168 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RB _atom_site.label_atom_id RB _atom_site.label_comp_id RB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 155.833 _atom_site.Cartn_y 155.852 _atom_site.Cartn_z -31.036 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 23.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RB _atom_site.auth_comp_id RB _atom_site.auth_seq_id 201 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #