data_1R3K # _model_server_result.job_id y0yITHfccz1u8HEj7ce5Yw _model_server_result.datetime_utc '2024-11-28 12:06:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1R3K # _exptl.entry_id 1R3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 625.018 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIACYL GLYCEROL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R3K _cell.length_a 154.18 _cell.length_b 154.18 _cell.length_c 75.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 308.36 308.36 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 308.36 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 308.36 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 145 B CYS 145 1_555 B SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 C OG1 THR 75 C THR 75 1_555 F TL TL . C TL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.304 ? metalc ? metalc2 C O THR 75 C THR 75 1_555 F TL TL . C TL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc3 C OG1 THR 75 C THR 75 4_575 F TL TL . C TL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.304 ? metalc ? metalc4 C O THR 75 C THR 75 4_575 F TL TL . C TL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc5 C OG1 THR 75 C THR 75 3_755 F TL TL . C TL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.304 ? metalc ? metalc6 C O THR 75 C THR 75 3_755 F TL TL . C TL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc7 C OG1 THR 75 C THR 75 2_775 F TL TL . C TL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.304 ? metalc ? metalc8 C O THR 75 C THR 75 2_775 F TL TL . C TL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? # _chem_comp.formula 'C39 H76 O5' _chem_comp.formula_weight 625.018 _chem_comp.id DGA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIACYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 DGA sing 83 n n CA1 OA1 DGA doub 84 n n CA1 OG1 DGA sing 85 n n CA2 CA3 DGA sing 86 n n CA2 HA21 DGA sing 87 n n CA2 HA22 DGA sing 88 n n CA3 CA4 DGA sing 89 n n CA3 HA31 DGA sing 90 n n CA3 HA32 DGA sing 91 n n CA4 CA5 DGA sing 92 n n CA4 HA41 DGA sing 93 n n CA4 HA42 DGA sing 94 n n CA5 CA6 DGA sing 95 n n CA5 HA51 DGA sing 96 n n CA5 HA52 DGA sing 97 n n CA6 CA7 DGA sing 98 n n CA6 HA61 DGA sing 99 n n CA6 HA62 DGA sing 100 n n CA7 CA8 DGA sing 101 n n CA7 HA71 DGA sing 102 n n CA7 HA72 DGA sing 103 n n CA8 CA9 DGA sing 104 n n CA8 HA81 DGA sing 105 n n CA8 HA82 DGA sing 106 n n CA9 CAA DGA sing 107 n n CA9 HA91 DGA sing 108 n n CA9 HA92 DGA sing 109 n n CAA CBA DGA sing 110 n n CAA HAT1 DGA sing 111 n n CAA HAT2 DGA sing 112 n n CBA CCA DGA sing 113 n n CBA HAE1 DGA sing 114 n n CBA HAE2 DGA sing 115 n n CCA CDA DGA sing 116 n n CCA HAW1 DGA sing 117 n n CCA HAW2 DGA sing 118 n n CDA CEA DGA sing 119 n n CDA HAH1 DGA sing 120 n n CDA HAH2 DGA sing 121 n n CEA CFA DGA sing 122 n n CEA HAF1 DGA sing 123 n n CEA HAF2 DGA sing 124 n n CFA CGA DGA sing 125 n n CFA HAN1 DGA sing 126 n n CFA HAN2 DGA sing 127 n n CGA CHA DGA sing 128 n n CGA HAS1 DGA sing 129 n n CGA HAS2 DGA sing 130 n n CHA CIA DGA sing 131 n n CHA HAV1 DGA sing 132 n n CHA HAV2 DGA sing 133 n n CIA HAG1 DGA sing 134 n n CIA HAG2 DGA sing 135 n n CIA HAG3 DGA sing 136 n n CB1 CB2 DGA sing 137 n n CB1 OB1 DGA doub 138 n n CB1 OG2 DGA sing 139 n n CB2 CB3 DGA sing 140 n n CB2 HB21 DGA sing 141 n n CB2 HB22 DGA sing 142 n n CB3 CB4 DGA sing 143 n n CB3 HB31 DGA sing 144 n n CB3 HB32 DGA sing 145 n n CB4 CB5 DGA sing 146 n n CB4 HB41 DGA sing 147 n n CB4 HB42 DGA sing 148 n n CB5 CB6 DGA sing 149 n n CB5 HB51 DGA sing 150 n n CB5 HB52 DGA sing 151 n n CB6 CB7 DGA sing 152 n n CB6 HB61 DGA sing 153 n n CB6 HB62 DGA sing 154 n n CB7 CB8 DGA sing 155 n n CB7 HB71 DGA sing 156 n n CB7 HB72 DGA sing 157 n n CB8 CB9 DGA sing 158 n n CB8 HB81 DGA sing 159 n n CB8 HB82 DGA sing 160 n n CB9 CAB DGA sing 161 n n CB9 HB91 DGA sing 162 n n CB9 HB92 DGA sing 163 n n CAB CBB DGA sing 164 n n CAB HBT1 DGA sing 165 n n CAB HBT2 DGA sing 166 n n CBB CCB DGA sing 167 n n CBB HBE1 DGA sing 168 n n CBB HBE2 DGA sing 169 n n CCB CDB DGA sing 170 n n CCB HBW1 DGA sing 171 n n CCB HBW2 DGA sing 172 n n CDB CEB DGA sing 173 n n CDB HBH1 DGA sing 174 n n CDB HBH2 DGA sing 175 n n CEB CFB DGA sing 176 n n CEB HBF1 DGA sing 177 n n CEB HBF2 DGA sing 178 n n CFB CGB DGA sing 179 n n CFB HBN1 DGA sing 180 n n CFB HBN2 DGA sing 181 n n CGB CHB DGA sing 182 n n CGB HBS1 DGA sing 183 n n CGB HBS2 DGA sing 184 n n CHB CIB DGA sing 185 n n CHB HBV1 DGA sing 186 n n CHB HBV2 DGA sing 187 n n CIB HBG1 DGA sing 188 n n CIB HBG2 DGA sing 189 n n CIB HBG3 DGA sing 190 n n OG1 CG1 DGA sing 191 n n CG1 CG2 DGA sing 192 n n CG1 HG11 DGA sing 193 n n CG1 HG12 DGA sing 194 n n CG2 OG2 DGA sing 195 n n CG2 CG3 DGA sing 196 n n CG2 HG2 DGA sing 197 n n CG3 OXT DGA sing 198 n n CG3 HG31 DGA sing 199 n n CG3 HG32 DGA sing 200 n n OXT HXT DGA sing 201 n n # _atom_sites.entry_id 1R3K _atom_sites.fract_transf_matrix[1][1] 0.006486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DGA C 1 201 201 DGA DGA . E 5 TL C 1 301 301 TL TL . F 5 TL C 1 302 302 TL TL . G 5 TL C 1 303 303 TL TL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 DGA . . . D 4 164.116 137.649 -29.13 1 81.8 ? CA1 DGA 201 C 1 HETATM 2 C CA2 DGA . . . D 4 164.611 138.403 -30.377 1 78.95 ? CA2 DGA 201 C 1 HETATM 3 C CA3 DGA . . . D 4 163.671 138.213 -31.56 1 77.47 ? CA3 DGA 201 C 1 HETATM 4 C CA4 DGA . . . D 4 164.238 138.823 -32.839 1 76.01 ? CA4 DGA 201 C 1 HETATM 5 C CA5 DGA . . . D 4 163.323 138.585 -34.045 1 74.21 ? CA5 DGA 201 C 1 HETATM 6 C CA6 DGA . . . D 4 163.983 139.092 -35.313 1 74.35 ? CA6 DGA 201 C 1 HETATM 7 C CA7 DGA . . . D 4 163.165 138.803 -36.56 1 74.12 ? CA7 DGA 201 C 1 HETATM 8 C CA8 DGA . . . D 4 163.956 139.207 -37.81 1 75.35 ? CA8 DGA 201 C 1 HETATM 9 C CA9 DGA . . . D 4 163.212 138.872 -39.099 1 75.28 ? CA9 DGA 201 C 1 HETATM 10 O OA1 DGA . . . D 4 163.154 138.08 -28.486 1 81.14 ? OA1 DGA 201 C 1 HETATM 11 C CB1 DGA . . . D 4 167.694 134.733 -29.154 1 91.07 ? CB1 DGA 201 C 1 HETATM 12 C CB2 DGA . . . D 4 167.003 134.955 -30.546 1 90.05 ? CB2 DGA 201 C 1 HETATM 13 C CB3 DGA . . . D 4 167.976 135.473 -31.605 1 89.01 ? CB3 DGA 201 C 1 HETATM 14 C CB4 DGA . . . D 4 167.287 135.694 -32.941 1 88.61 ? CB4 DGA 201 C 1 HETATM 15 O OB1 DGA . . . D 4 168.531 133.818 -29.018 1 92.12 ? OB1 DGA 201 C 1 HETATM 16 O OG1 DGA . . . D 4 164.723 136.36 -28.788 1 84.44 ? OG1 DGA 201 C 1 HETATM 17 C CG1 DGA . . . D 4 165.056 136.194 -27.373 1 86.54 ? CG1 DGA 201 C 1 HETATM 18 C CG2 DGA . . . D 4 166.21 135.183 -27.217 1 87.78 ? CG2 DGA 201 C 1 HETATM 19 O OG2 DGA . . . D 4 167.381 135.621 -27.99 1 89.38 ? OG2 DGA 201 C 1 HETATM 20 C CG3 DGA . . . D 4 166.583 134.983 -25.738 1 86.78 ? CG3 DGA 201 C 1 HETATM 21 O OXT DGA . . . D 4 165.609 134.181 -25.023 1 84.14 ? OXT DGA 201 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #