data_1R3M # _model_server_result.job_id spaboheUq8Xyv30T-mdvXg _model_server_result.datetime_utc '2025-03-03 00:11:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":126}' # _entry.id 1R3M # _exptl.entry_id 1R3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116 _cell.angle_gamma 90 _cell.entry_id 1R3M _cell.length_a 49.48 _cell.length_b 57.55 _cell.length_c 53.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 31 A CYS 31 1_555 B SG CYS 32 B CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 32 A CYS 32 1_555 B SG CYS 31 B CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1R3M _atom_sites.fract_transf_matrix[1][1] 0.02021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009857 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 125 125 PO4 PO4 . D 2 PO4 B 1 126 126 PO4 PO4 . E 3 HOH A 1 202 202 HOH HOH . E 3 HOH A 2 210 210 HOH HOH . E 3 HOH A 3 212 212 HOH HOH . E 3 HOH A 4 228 228 HOH HOH . E 3 HOH A 5 229 229 HOH HOH . E 3 HOH A 6 230 230 HOH HOH . E 3 HOH A 7 232 232 HOH HOH . E 3 HOH A 8 233 233 HOH HOH . E 3 HOH A 9 236 236 HOH HOH . E 3 HOH A 10 244 244 HOH HOH . E 3 HOH A 11 245 245 HOH HOH . E 3 HOH A 12 246 246 HOH HOH . E 3 HOH A 13 250 250 HOH HOH . E 3 HOH A 14 251 251 HOH HOH . E 3 HOH A 15 266 266 HOH HOH . E 3 HOH A 16 270 270 HOH HOH . E 3 HOH A 17 271 271 HOH HOH . E 3 HOH A 18 272 272 HOH HOH . E 3 HOH A 19 273 273 HOH HOH . E 3 HOH A 20 274 274 HOH HOH . E 3 HOH A 21 276 276 HOH HOH . E 3 HOH A 22 282 282 HOH HOH . E 3 HOH A 23 283 283 HOH HOH . E 3 HOH A 24 284 284 HOH HOH . E 3 HOH A 25 285 285 HOH HOH . E 3 HOH A 26 288 288 HOH HOH . E 3 HOH A 27 290 290 HOH HOH . E 3 HOH A 28 292 292 HOH HOH . E 3 HOH A 29 296 296 HOH HOH . E 3 HOH A 30 297 297 HOH HOH . E 3 HOH A 31 302 302 HOH HOH . E 3 HOH A 32 303 303 HOH HOH . E 3 HOH A 33 307 307 HOH HOH . E 3 HOH A 34 310 310 HOH HOH . E 3 HOH A 35 311 311 HOH HOH . E 3 HOH A 36 312 312 HOH HOH . E 3 HOH A 37 313 313 HOH HOH . E 3 HOH A 38 315 315 HOH HOH . E 3 HOH A 39 316 316 HOH HOH . E 3 HOH A 40 317 317 HOH HOH . E 3 HOH A 41 318 318 HOH HOH . E 3 HOH A 42 319 319 HOH HOH . E 3 HOH A 43 322 322 HOH HOH . E 3 HOH A 44 326 326 HOH HOH . E 3 HOH A 45 327 327 HOH HOH . E 3 HOH A 46 336 336 HOH HOH . E 3 HOH A 47 346 346 HOH HOH . E 3 HOH A 48 356 356 HOH HOH . E 3 HOH A 49 362 362 HOH HOH . F 3 HOH B 1 201 201 HOH HOH . F 3 HOH B 2 203 203 HOH HOH . F 3 HOH B 3 205 205 HOH HOH . F 3 HOH B 4 206 206 HOH HOH . F 3 HOH B 5 207 207 HOH HOH . F 3 HOH B 6 213 213 HOH HOH . F 3 HOH B 7 214 214 HOH HOH . F 3 HOH B 8 215 215 HOH HOH . F 3 HOH B 9 218 218 HOH HOH . F 3 HOH B 10 219 219 HOH HOH . F 3 HOH B 11 220 220 HOH HOH . F 3 HOH B 12 223 223 HOH HOH . F 3 HOH B 13 225 225 HOH HOH . F 3 HOH B 14 226 226 HOH HOH . F 3 HOH B 15 227 227 HOH HOH . F 3 HOH B 16 231 231 HOH HOH . F 3 HOH B 17 234 234 HOH HOH . F 3 HOH B 18 237 237 HOH HOH . F 3 HOH B 19 239 239 HOH HOH . F 3 HOH B 20 240 240 HOH HOH . F 3 HOH B 21 241 241 HOH HOH . F 3 HOH B 22 247 247 HOH HOH . F 3 HOH B 23 248 248 HOH HOH . F 3 HOH B 24 249 249 HOH HOH . F 3 HOH B 25 255 255 HOH HOH . F 3 HOH B 26 268 268 HOH HOH . F 3 HOH B 27 275 275 HOH HOH . F 3 HOH B 28 277 277 HOH HOH . F 3 HOH B 29 278 278 HOH HOH . F 3 HOH B 30 279 279 HOH HOH . F 3 HOH B 31 281 281 HOH HOH . F 3 HOH B 32 286 286 HOH HOH . F 3 HOH B 33 289 289 HOH HOH . F 3 HOH B 34 291 291 HOH HOH . F 3 HOH B 35 294 294 HOH HOH . F 3 HOH B 36 298 298 HOH HOH . F 3 HOH B 37 301 301 HOH HOH . F 3 HOH B 38 306 306 HOH HOH . F 3 HOH B 39 308 308 HOH HOH . F 3 HOH B 40 309 309 HOH HOH . F 3 HOH B 41 314 314 HOH HOH . F 3 HOH B 42 321 321 HOH HOH . F 3 HOH B 43 324 324 HOH HOH . F 3 HOH B 44 332 332 HOH HOH . F 3 HOH B 45 334 334 HOH HOH . F 3 HOH B 46 337 337 HOH HOH . F 3 HOH B 47 339 339 HOH HOH . F 3 HOH B 48 344 344 HOH HOH . F 3 HOH B 49 345 345 HOH HOH . F 3 HOH B 50 355 355 HOH HOH . F 3 HOH B 51 361 361 HOH HOH . F 3 HOH B 52 363 363 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 -20.323 12.994 34.105 1 37.85 ? P PO4 126 B 1 HETATM 2 O O1 PO4 . . . D 2 -20.933 14.352 34.191 1 39.7 ? O1 PO4 126 B 1 HETATM 3 O O2 PO4 . . . D 2 -21.11 12.157 33.12 1 42.05 ? O2 PO4 126 B 1 HETATM 4 O O3 PO4 . . . D 2 -20.591 12.457 35.476 1 38.92 ? O3 PO4 126 B 1 HETATM 5 O O4 PO4 . . . D 2 -18.869 13.053 33.766 1 39.36 ? O4 PO4 126 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #