data_1R46 # _model_server_result.job_id s5_6v6vefSCtLKqpnj7xEg _model_server_result.datetime_utc '2024-11-23 03:06:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":639}' # _entry.id 1R46 # _exptl.entry_id 1R46 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R46 _cell.length_a 88.458 _cell.length_b 88.458 _cell.length_c 215.482 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN MAN C1 O1 . O6 HO6 . sing 5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 8 ? 4 4 3 MAN MAN C1 O1 . O3 HO3 . sing 9 ? 4 5 3 MAN MAN C1 O1 . O6 HO6 . sing 10 ? 4 6 1 FUC NAG C1 O1 . O6 HO6 . sing 11 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 12 ? 5 3 2 MAN NAG C1 O1 . O4 HO4 . sing 13 ? 5 4 3 MAN MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG D 692 NAG 2 n C NAG 2 C 2 NAG D 693 NAG 2 n C MAN 3 C 3 MAN D 694 MAN 2 n C MAN 4 C 4 MAN D 696 MAN 2 n C MAN 5 C 5 MAN D 695 MAN 3 n D NAG 1 D 1 NAG E 715 NAG 3 n D NAG 2 D 2 NAG E 716 NAG 4 n E NAG 1 E 1 NAG F 639 NAG 4 n E NAG 2 E 2 NAG F 640 NAG 4 n E MAN 3 E 3 MAN F 641 MAN 4 n E MAN 4 E 4 MAN F 642 MAN 4 n E MAN 5 E 5 MAN F 643 MAN 4 n E FUC 6 E 6 FUC F 644 FUC 5 n F NAG 1 F 1 NAG G 692 NAG 5 n F NAG 2 F 2 NAG G 693 NAG 5 n F MAN 3 F 3 MAN G 694 MAN 5 n F MAN 4 F 4 MAN G 695 MAN 3 n G NAG 1 G 1 NAG H 715 NAG 3 n G NAG 2 G 2 NAG H 716 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 52 1_555 A SG CYS 63 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 25 A CYS 56 1_555 A SG CYS 32 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 111 A CYS 142 1_555 A SG CYS 141 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 171 A CYS 202 1_555 A SG CYS 192 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 347 A CYS 378 1_555 A SG CYS 351 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 B SG CYS 21 B CYS 52 1_555 B SG CYS 63 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf7 B SG CYS 25 B CYS 56 1_555 B SG CYS 32 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 111 B CYS 142 1_555 B SG CYS 141 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 B SG CYS 171 B CYS 202 1_555 B SG CYS 192 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 B SG CYS 347 B CYS 378 1_555 B SG CYS 351 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 108 A ASN 139 1_555 H C1 NAG . A NAG 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 A ND2 ASN 161 A ASN 192 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 184 A ASN 215 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale4 B ND2 ASN 108 B ASN 139 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 B ND2 ASN 161 B ASN 192 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale6 B ND2 ASN 184 B ASN 215 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale8 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale9 C O3 MAN . C MAN 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale10 C O6 MAN . C MAN 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale12 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale13 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 MAN . E MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale15 E O3 MAN . E MAN 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale16 E O6 MAN . E MAN 3 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale17 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale18 F O4 NAG . F NAG 2 1_555 F C1 MAN . F MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale19 F O3 MAN . F MAN 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale20 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 293 n n C1 O1 NAG sing 294 n n C1 O5 NAG sing 295 n n C1 H1 NAG sing 296 n n C2 C3 NAG sing 297 n n C2 N2 NAG sing 298 n n C2 H2 NAG sing 299 n n C3 C4 NAG sing 300 n n C3 O3 NAG sing 301 n n C3 H3 NAG sing 302 n n C4 C5 NAG sing 303 n n C4 O4 NAG sing 304 n n C4 H4 NAG sing 305 n n C5 C6 NAG sing 306 n n C5 O5 NAG sing 307 n n C5 H5 NAG sing 308 n n C6 O6 NAG sing 309 n n C6 H61 NAG sing 310 n n C6 H62 NAG sing 311 n n C7 C8 NAG sing 312 n n C7 N2 NAG sing 313 n n C7 O7 NAG doub 314 n n C8 H81 NAG sing 315 n n C8 H82 NAG sing 316 n n C8 H83 NAG sing 317 n n N2 HN2 NAG sing 318 n n O1 HO1 NAG sing 319 n n O3 HO3 NAG sing 320 n n O4 HO4 NAG sing 321 n n O6 HO6 NAG sing 322 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1R46 _atom_sites.fract_transf_matrix[1][1] 0.011305 _atom_sites.fract_transf_matrix[1][2] 0.006527 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 NAG A 1 639 639 NAG NAG . I 7 EDO A 1 1101 1101 EDO EGL . J 7 EDO A 1 1102 1102 EDO EGL . K 7 EDO B 1 1103 1103 EDO EGL . L 7 EDO B 1 1104 1104 EDO EGL . M 8 HOH A 1 1 1 HOH HOH . M 8 HOH A 2 2 2 HOH HOH . M 8 HOH A 3 3 3 HOH HOH . M 8 HOH A 4 4 4 HOH HOH . M 8 HOH A 5 5 5 HOH HOH . M 8 HOH A 6 8 8 HOH HOH . M 8 HOH A 7 9 9 HOH HOH . M 8 HOH A 8 14 14 HOH HOH . M 8 HOH A 9 15 15 HOH HOH . N 8 HOH B 1 6 6 HOH HOH . N 8 HOH B 2 7 7 HOH HOH . N 8 HOH B 3 10 10 HOH HOH . N 8 HOH B 4 11 11 HOH HOH . N 8 HOH B 5 12 12 HOH HOH . N 8 HOH B 6 13 13 HOH HOH . N 8 HOH B 7 16 16 HOH HOH . N 8 HOH B 8 17 17 HOH HOH . N 8 HOH B 9 18 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 6 -32.392 69.366 110.823 1 89.12 ? C1 NAG 639 A 1 HETATM 2 C C2 NAG . . . H 6 -31.756 70.068 112.036 1 87.34 ? C2 NAG 639 A 1 HETATM 3 C C3 NAG . . . H 6 -32.824 70.878 112.794 1 90.99 ? C3 NAG 639 A 1 HETATM 4 C C4 NAG . . . H 6 -33.483 71.883 111.834 1 93.75 ? C4 NAG 639 A 1 HETATM 5 C C5 NAG . . . H 6 -34.081 71.114 110.634 1 91.21 ? C5 NAG 639 A 1 HETATM 6 C C6 NAG . . . H 6 -34.795 71.984 109.58 1 80 ? C6 NAG 639 A 1 HETATM 7 C C7 NAG . . . H 6 -29.859 69.112 113.155 1 75.94 ? C7 NAG 639 A 1 HETATM 8 C C8 NAG . . . H 6 -29.312 68.048 114.082 1 78.72 ? C8 NAG 639 A 1 HETATM 9 N N2 NAG . . . H 6 -31.162 69.082 112.913 1 81.58 ? N2 NAG 639 A 1 HETATM 10 O O3 NAG . . . H 6 -32.232 71.562 113.892 1 79.77 ? O3 NAG 639 A 1 HETATM 11 O O4 NAG . . . H 6 -34.495 72.625 112.511 1 98.85 ? O4 NAG 639 A 1 HETATM 12 O O5 NAG . . . H 6 -33.033 70.345 109.958 1 95.79 ? O5 NAG 639 A 1 HETATM 13 O O6 NAG . . . H 6 -34.245 73.299 109.482 1 67.83 ? O6 NAG 639 A 1 HETATM 14 O O7 NAG . . . H 6 -29.103 69.942 112.663 1 78.48 ? O7 NAG 639 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #