data_1R4L # _model_server_result.job_id '_mFYb8wLvIRWTf4kpLRjfQ' _model_server_result.datetime_utc '2024-10-11 13:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":804}' # _entry.id 1R4L # _exptl.entry_id 1R4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.31 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(S,S)-2-{1-CARBOXY-2-[3-(3,5-DICHLORO-BENZYL)-3H-IMIDAZOL-4-YL]-ETHYLAMINO}-4-METHYL-PENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.65 _cell.angle_gamma 90 _cell.entry_id 1R4L _cell.length_a 100.531 _cell.length_b 86.509 _cell.length_c 105.858 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 133 A CYS 133 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 344 A CYS 344 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 530 A CYS 530 1_555 A SG CYS 542 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 90 A ASN 90 1_555 F C1 NAG . A NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 103 A ASN 103 1_555 G C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? metalc ? metalc1 A NE2 HIS 374 A HIS 374 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 378 A HIS 378 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A OE1 GLU 402 A GLU 402 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc4 I ZN ZN . A ZN 803 1_555 J O3 XX5 . A XX5 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc5 I ZN ZN . A ZN 803 1_555 J O1 XX5 . A XX5 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C19 H23 Cl2 N3 O4' _chem_comp.formula_weight 428.31 _chem_comp.id XX5 _chem_comp.mon_nstd_flag . _chem_comp.name '(S,S)-2-{1-CARBOXY-2-[3-(3,5-DICHLORO-BENZYL)-3H-IMIDAZOL-4-YL]-ETHYLAMINO}-4-METHYL-PENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MLN-4760 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 XX5 doub 406 n n C2 O3 XX5 sing 407 n n C2 C4 XX5 sing 408 n n C4 C5 XX5 sing 409 n n C4 N9 XX5 sing 410 n n C4 HC4 XX5 sing 411 n n C5 C6 XX5 sing 412 n n C5 HC51 XX5 sing 413 n n C5 HC52 XX5 sing 414 n n C6 C7 XX5 sing 415 n n C6 C8 XX5 sing 416 n n C6 HC6 XX5 sing 417 n n C7 HC71 XX5 sing 418 n n C7 HC72 XX5 sing 419 n n C7 HC73 XX5 sing 420 n n C8 HC81 XX5 sing 421 n n C8 HC82 XX5 sing 422 n n C8 HC83 XX5 sing 423 n n N9 C10 XX5 sing 424 n n N9 HN9 XX5 sing 425 n n C10 C11 XX5 sing 426 n n C10 C14 XX5 sing 427 n n C10 H10 XX5 sing 428 n n C11 O12 XX5 sing 429 n n C11 O13 XX5 doub 430 n n O12 H12 XX5 sing 431 n n C14 C15 XX5 sing 432 n n C14 H141 XX5 sing 433 n n C14 H142 XX5 sing 434 n n C15 C16 XX5 doub 435 n y C15 N19 XX5 sing 436 n y C16 N17 XX5 sing 437 n y C16 H16 XX5 sing 438 n n N17 C18 XX5 doub 439 n y C18 N19 XX5 sing 440 n y C18 H18 XX5 sing 441 n n N19 C20 XX5 sing 442 n n C20 C21 XX5 sing 443 n n C20 H201 XX5 sing 444 n n C20 H202 XX5 sing 445 n n C21 C22 XX5 doub 446 n y C21 C26 XX5 sing 447 n y C22 C23 XX5 sing 448 n y C22 H22 XX5 sing 449 n n C23 CL24 XX5 sing 450 n n C23 C25 XX5 doub 451 n y C25 C27 XX5 sing 452 n y C25 H25 XX5 sing 453 n n C26 C27 XX5 doub 454 n y C26 H26 XX5 sing 455 n n C27 CL28 XX5 sing 456 n n HO1 O3 XX5 sing 457 n n # _atom_sites.entry_id 1R4L _atom_sites.fract_transf_matrix[1][1] 0.009947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002416 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 800 800 NAG NAG . G 6 NAG A 1 801 801 NAG NAG . H 7 CL A 1 802 2 CL CL . I 8 ZN A 1 803 1 ZN ZN . J 9 XX5 A 1 804 500 XX5 XX5 . K 10 HOH A 1 805 1 HOH TIP . K 10 HOH A 2 806 2 HOH TIP . K 10 HOH A 3 807 3 HOH TIP . K 10 HOH A 4 808 4 HOH TIP . K 10 HOH A 5 809 5 HOH TIP . K 10 HOH A 6 810 6 HOH TIP . K 10 HOH A 7 811 7 HOH TIP . K 10 HOH A 8 812 8 HOH TIP . K 10 HOH A 9 813 9 HOH TIP . K 10 HOH A 10 814 10 HOH TIP . K 10 HOH A 11 815 11 HOH TIP . K 10 HOH A 12 816 12 HOH TIP . K 10 HOH A 13 817 13 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 XX5 . . . J 9 38.275 6.568 23.496 1 34.24 ? O1 XX5 804 A 1 HETATM 2 C C2 XX5 . . . J 9 38.329 6.978 24.645 1 37.98 ? C2 XX5 804 A 1 HETATM 3 O O3 XX5 . . . J 9 38.258 8.171 24.888 1 35.41 ? O3 XX5 804 A 1 HETATM 4 C C4 XX5 . . . J 9 38.497 5.953 25.798 1 43.43 ? C4 XX5 804 A 1 HETATM 5 C C5 XX5 . . . J 9 37.212 5.541 26.544 1 40.81 ? C5 XX5 804 A 1 HETATM 6 C C6 XX5 . . . J 9 35.846 6.059 26.119 1 38.4 ? C6 XX5 804 A 1 HETATM 7 C C7 XX5 . . . J 9 34.829 5.531 27.11 1 44.99 ? C7 XX5 804 A 1 HETATM 8 C C8 XX5 . . . J 9 35.445 5.521 24.741 1 42.43 ? C8 XX5 804 A 1 HETATM 9 N N9 XX5 . . . J 9 39.477 6.366 26.812 1 49.77 ? N9 XX5 804 A 1 HETATM 10 C C10 XX5 . . . J 9 40.87 6.006 26.523 1 52.31 ? C10 XX5 804 A 1 HETATM 11 C C11 XX5 . . . J 9 41.104 4.529 26.073 1 52.07 ? C11 XX5 804 A 1 HETATM 12 O O12 XX5 . . . J 9 41.443 4.331 24.91 1 50.89 ? O12 XX5 804 A 1 HETATM 13 O O13 XX5 . . . J 9 40.957 3.615 26.874 1 50.99 ? O13 XX5 804 A 1 HETATM 14 C C14 XX5 . . . J 9 41.777 6.341 27.739 1 50.77 ? C14 XX5 804 A 1 HETATM 15 C C15 XX5 . . . J 9 43.235 6.162 27.357 1 48.32 ? C15 XX5 804 A 1 HETATM 16 C C16 XX5 . . . J 9 43.858 6.771 26.249 1 41.23 ? C16 XX5 804 A 1 HETATM 17 N N17 XX5 . . . J 9 45.121 6.364 26.246 1 47.37 ? N17 XX5 804 A 1 HETATM 18 C C18 XX5 . . . J 9 45.264 5.543 27.309 1 47.63 ? C18 XX5 804 A 1 HETATM 19 N N19 XX5 . . . J 9 44.158 5.367 28.044 1 47.23 ? N19 XX5 804 A 1 HETATM 20 C C20 XX5 . . . J 9 43.951 4.519 29.301 1 42.67 ? C20 XX5 804 A 1 HETATM 21 C C21 XX5 . . . J 9 43.925 5.153 30.723 1 40.42 ? C21 XX5 804 A 1 HETATM 22 C C22 XX5 . . . J 9 44.666 6.346 30.99 1 41.89 ? C22 XX5 804 A 1 HETATM 23 C C23 XX5 . . . J 9 44.653 6.95 32.307 1 49.05 ? C23 XX5 804 A 1 HETATM 24 CL CL24 XX5 . . . J 9 45.569 8.433 32.649 1 51.74 ? CL24 XX5 804 A 1 HETATM 25 C C25 XX5 . . . J 9 43.905 6.381 33.369 1 41.9 ? C25 XX5 804 A 1 HETATM 26 C C26 XX5 . . . J 9 43.171 4.591 31.824 1 40.69 ? C26 XX5 804 A 1 HETATM 27 C C27 XX5 . . . J 9 43.162 5.207 33.146 1 45.72 ? C27 XX5 804 A 1 HETATM 28 CL CL28 XX5 . . . J 9 42.225 4.519 34.516 1 35.7 ? CL28 XX5 804 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #