data_1R4N
#
_model_server_result.job_id            '_kdPJIZ0wX2EADlcQJR6ew' 
_model_server_result.datetime_utc      '2024-12-23 05:51:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1r4n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":5}' 
#
_entry.id    1R4N 
#
_exptl.entry_id    1R4N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1R4N 
_cell.length_a            135 
_cell.length_b            197.9 
_cell.length_c            211 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1R4N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
PISA trimeric 3 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,M 1 1 
D,E,F,N,O 2 1 
G,H,I,P,Q 3 1 
J,K,L,R,S,T 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 Q N N 
? 4 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 188 B CYS 199 1_555 B SG CYS 191 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? 
disulf ? disulf2 B SG CYS 188 B CYS 199 1_555 B SG CYS 332 B CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
disulf ? disulf3 B SG CYS 191 B CYS 202 1_555 B SG CYS 332 B CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? 
disulf ? disulf4 B SG CYS 191 B CYS 202 1_555 B SG CYS 335 B CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
disulf ? disulf5 B SG CYS 332 B CYS 343 1_555 B SG CYS 335 B CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? 
disulf ? disulf6 E SG CYS 188 D CYS 199 1_555 E SG CYS 191 D CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
disulf ? disulf7 E SG CYS 188 D CYS 199 1_555 E SG CYS 332 D CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
disulf ? disulf8 E SG CYS 191 D CYS 202 1_555 E SG CYS 335 D CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc1 P ZN ZN . F ZN 3 1_555 H SG CYS 188 F CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc2 P ZN ZN . F ZN 3 1_555 H SG CYS 191 F CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc3 P ZN ZN . F ZN 3 1_555 H SG CYS 332 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc4 P ZN ZN . F ZN 3 1_555 H SG CYS 335 F CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc5 R ZN ZN . H ZN 1 1_555 K SG CYS 188 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc6 R ZN ZN . H ZN 1 1_555 K SG CYS 191 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc7 R ZN ZN . H ZN 1 1_555 K SG CYS 332 H CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc8 R ZN ZN . H ZN 1 1_555 K SG CYS 335 H CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     1R4N 
_atom_sites.fract_transf_matrix[1][1]    0.007407 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005053 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 ATP B 1 5 5 ATP ATP . 
N 4 ATP D 1 6 6 ATP ATP . 
O 5 ZN J 1 2 2 ZN ZN . 
P 5 ZN F 1 3 3 ZN ZN . 
Q 4 ATP F 1 7 7 ATP ATP . 
R 5 ZN H 1 1 1 ZN ZN . 
S 5 ZN H 1 4 4 ZN ZN . 
T 4 ATP H 1 8 8 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 4 55.628 102.122 18.922 1 49.44 ? PG ATP 5 B 1 
HETATM 2 O O1G ATP . . . M 4 57.085 102.448 19.159 1 50.05 ? O1G ATP 5 B 1 
HETATM 3 O O2G ATP . . . M 4 54.994 101.312 20.114 1 52.36 ? O2G ATP 5 B 1 
HETATM 4 O O3G ATP . . . M 4 54.87 103.459 18.652 1 48.18 ? O3G ATP 5 B 1 
HETATM 5 P PB ATP . . . M 4 55.876 99.752 17.573 1 38.57 ? PB ATP 5 B 1 
HETATM 6 O O1B ATP . . . M 4 55.841 99.208 16.186 1 49.41 ? O1B ATP 5 B 1 
HETATM 7 O O2B ATP . . . M 4 55.717 98.997 18.918 1 46.92 ? O2B ATP 5 B 1 
HETATM 8 O O3B ATP . . . M 4 55.567 101.295 17.558 1 52.48 ? O3B ATP 5 B 1 
HETATM 9 P PA ATP . . . M 4 52.926 98.863 18.163 1 31.94 ? PA ATP 5 B 1 
HETATM 10 O O1A ATP . . . M 4 53.476 98.136 19.318 1 38.34 ? O1A ATP 5 B 1 
HETATM 11 O O2A ATP . . . M 4 51.928 99.91 18.614 1 38.02 ? O2A ATP 5 B 1 
HETATM 12 O O3A ATP . . . M 4 54.189 99.574 17.342 1 43.52 ? O3A ATP 5 B 1 
HETATM 13 O O5' ATP . . . M 4 52.203 97.81 17.148 1 35.26 ? O5' ATP 5 B 1 
HETATM 14 C C5' ATP . . . M 4 52.891 97.213 16.086 1 38.13 ? C5' ATP 5 B 1 
HETATM 15 C C4' ATP . . . M 4 53.074 95.718 16.351 1 33.42 ? C4' ATP 5 B 1 
HETATM 16 O O4' ATP . . . M 4 53.163 95.028 15.119 1 32.29 ? O4' ATP 5 B 1 
HETATM 17 C C3' ATP . . . M 4 54.349 95.427 17.065 1 30.37 ? C3' ATP 5 B 1 
HETATM 18 O O3' ATP . . . M 4 54.021 94.371 17.971 1 31.11 ? O3' ATP 5 B 1 
HETATM 19 C C2' ATP . . . M 4 55.321 95.052 15.934 1 33.04 ? C2' ATP 5 B 1 
HETATM 20 O O2' ATP . . . M 4 56.465 94.338 16.205 1 42.84 ? O2' ATP 5 B 1 
HETATM 21 C C1' ATP . . . M 4 54.42 94.323 14.988 1 39.04 ? C1' ATP 5 B 1 
HETATM 22 N N9 ATP . . . M 4 54.666 94.453 13.53 1 38.79 ? N9 ATP 5 B 1 
HETATM 23 C C8 ATP . . . M 4 54.749 95.661 12.925 1 33.38 ? C8 ATP 5 B 1 
HETATM 24 N N7 ATP . . . M 4 54.984 95.472 11.651 1 29.73 ? N7 ATP 5 B 1 
HETATM 25 C C5 ATP . . . M 4 55.06 94.172 11.356 1 38.22 ? C5 ATP 5 B 1 
HETATM 26 C C6 ATP . . . M 4 55.309 93.416 10.198 1 36.79 ? C6 ATP 5 B 1 
HETATM 27 N N6 ATP . . . M 4 55.555 93.928 8.993 1 25.68 ? N6 ATP 5 B 1 
HETATM 28 N N1 ATP . . . M 4 55.318 92.022 10.285 1 43.14 ? N1 ATP 5 B 1 
HETATM 29 C C2 ATP . . . M 4 55.123 91.384 11.49 1 37.04 ? C2 ATP 5 B 1 
HETATM 30 N N3 ATP . . . M 4 54.885 92.127 12.649 1 38.25 ? N3 ATP 5 B 1 
HETATM 31 C C4 ATP . . . M 4 54.883 93.492 12.572 1 36.17 ? C4 ATP 5 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    55 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#