data_1R4U # _model_server_result.job_id Y01-vVvT2StpQ7X8ytxWlQ _model_server_result.datetime_utc '2024-10-28 06:21:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 1R4U # _exptl.entry_id 1R4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 159.1 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R4U _cell.length_a 79.702 _cell.length_b 96.075 _cell.length_c 105.589 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 79.702 96.075 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 79.702 0 105.589 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 96.075 105.589 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SAC _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SAC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id ALA _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ALA _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H5 N3 O4' _chem_comp.formula_weight 159.1 _chem_comp.id OXC _chem_comp.mon_nstd_flag . _chem_comp.name 'OXONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 OXC sing 237 n n N1 C6 OXC sing 238 n n N1 HN1 OXC sing 239 n n C2 O2 OXC doub 240 n n C2 N3 OXC sing 241 n n N3 C4 OXC sing 242 n n N3 HN3 OXC sing 243 n n C4 N5 OXC sing 244 n n C4 CG OXC sing 245 n n C4 H4 OXC sing 246 n n N5 C6 OXC sing 247 n n N5 HN5 OXC sing 248 n n C6 O6 OXC doub 249 n n CG OD1 OXC sing 250 n n CG OD2 OXC doub 251 n n OD1 HD1 OXC sing 252 n n # _atom_sites.entry_id 1R4U _atom_sites.fract_transf_matrix[1][1] 0.012547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OXC A 1 999 999 OXC OXC . C 3 HOH A 1 1000 1000 HOH WAT . C 3 HOH A 2 1001 1001 HOH WAT . C 3 HOH A 3 1002 1002 HOH WAT . C 3 HOH A 4 1003 1003 HOH WAT . C 3 HOH A 5 1004 1004 HOH WAT . C 3 HOH A 6 1005 1005 HOH WAT . C 3 HOH A 7 1006 1006 HOH WAT . C 3 HOH A 8 1007 1007 HOH WAT . C 3 HOH A 9 1008 1008 HOH WAT . C 3 HOH A 10 1009 1009 HOH WAT . C 3 HOH A 11 1010 1010 HOH WAT . C 3 HOH A 12 1011 1011 HOH WAT . C 3 HOH A 13 1012 1012 HOH WAT . C 3 HOH A 14 1013 1013 HOH WAT . C 3 HOH A 15 1014 1014 HOH WAT . C 3 HOH A 16 1015 1015 HOH WAT . C 3 HOH A 17 1016 1016 HOH WAT . C 3 HOH A 18 1017 1017 HOH WAT . C 3 HOH A 19 1018 1018 HOH WAT . C 3 HOH A 20 1019 1019 HOH WAT . C 3 HOH A 21 1020 1020 HOH WAT . C 3 HOH A 22 1021 1021 HOH WAT . C 3 HOH A 23 1022 1022 HOH WAT . C 3 HOH A 24 1023 1023 HOH WAT . C 3 HOH A 25 1024 1024 HOH WAT . C 3 HOH A 26 1025 1025 HOH WAT . C 3 HOH A 27 1026 1026 HOH WAT . C 3 HOH A 28 1027 1027 HOH WAT . C 3 HOH A 29 1028 1028 HOH WAT . C 3 HOH A 30 1029 1029 HOH WAT . C 3 HOH A 31 1030 1030 HOH WAT . C 3 HOH A 32 1031 1031 HOH WAT . C 3 HOH A 33 1032 1032 HOH WAT . C 3 HOH A 34 1033 1033 HOH WAT . C 3 HOH A 35 1034 1034 HOH WAT . C 3 HOH A 36 1035 1035 HOH WAT . C 3 HOH A 37 1036 1036 HOH WAT . C 3 HOH A 38 1037 1037 HOH WAT . C 3 HOH A 39 1038 1038 HOH WAT . C 3 HOH A 40 1039 1039 HOH WAT . C 3 HOH A 41 1040 1040 HOH WAT . C 3 HOH A 42 1041 1041 HOH WAT . C 3 HOH A 43 1042 1042 HOH WAT . C 3 HOH A 44 1043 1043 HOH WAT . C 3 HOH A 45 1044 1044 HOH WAT . C 3 HOH A 46 1045 1045 HOH WAT . C 3 HOH A 47 1046 1046 HOH WAT . C 3 HOH A 48 1047 1047 HOH WAT . C 3 HOH A 49 1048 1048 HOH WAT . C 3 HOH A 50 1049 1049 HOH WAT . C 3 HOH A 51 1050 1050 HOH WAT . C 3 HOH A 52 1051 1051 HOH WAT . C 3 HOH A 53 1052 1052 HOH WAT . C 3 HOH A 54 1053 1053 HOH WAT . C 3 HOH A 55 1054 1054 HOH WAT . C 3 HOH A 56 1055 1055 HOH WAT . C 3 HOH A 57 1056 1056 HOH WAT . C 3 HOH A 58 1057 1057 HOH WAT . C 3 HOH A 59 1058 1058 HOH WAT . C 3 HOH A 60 1059 1059 HOH WAT . C 3 HOH A 61 1060 1060 HOH WAT . C 3 HOH A 62 1061 1061 HOH WAT . C 3 HOH A 63 1062 1062 HOH WAT . C 3 HOH A 64 1063 1063 HOH WAT . C 3 HOH A 65 1064 1064 HOH WAT . C 3 HOH A 66 1065 1065 HOH WAT . C 3 HOH A 67 1066 1066 HOH WAT . C 3 HOH A 68 1067 1067 HOH WAT . C 3 HOH A 69 1068 1068 HOH WAT . C 3 HOH A 70 1069 1069 HOH WAT . C 3 HOH A 71 1070 1070 HOH WAT . C 3 HOH A 72 1071 1071 HOH WAT . C 3 HOH A 73 1072 1072 HOH WAT . C 3 HOH A 74 1073 1073 HOH WAT . C 3 HOH A 75 1074 1074 HOH WAT . C 3 HOH A 76 1075 1075 HOH WAT . C 3 HOH A 77 1076 1076 HOH WAT . C 3 HOH A 78 1077 1077 HOH WAT . C 3 HOH A 79 1078 1078 HOH WAT . C 3 HOH A 80 1079 1079 HOH WAT . C 3 HOH A 81 1080 1080 HOH WAT . C 3 HOH A 82 1081 1081 HOH WAT . C 3 HOH A 83 1082 1082 HOH WAT . C 3 HOH A 84 1083 1083 HOH WAT . C 3 HOH A 85 1084 1084 HOH WAT . C 3 HOH A 86 1085 1085 HOH WAT . C 3 HOH A 87 1086 1086 HOH WAT . C 3 HOH A 88 1087 1087 HOH WAT . C 3 HOH A 89 1088 1088 HOH WAT . C 3 HOH A 90 1089 1089 HOH WAT . C 3 HOH A 91 1090 1090 HOH WAT . C 3 HOH A 92 1091 1091 HOH WAT . C 3 HOH A 93 1092 1092 HOH WAT . C 3 HOH A 94 1093 1093 HOH WAT . C 3 HOH A 95 1094 1094 HOH WAT . C 3 HOH A 96 1095 1095 HOH WAT . C 3 HOH A 97 1096 1096 HOH WAT . C 3 HOH A 98 1097 1097 HOH WAT . C 3 HOH A 99 1098 1098 HOH WAT . C 3 HOH A 100 1099 1099 HOH WAT . C 3 HOH A 101 1100 1100 HOH WAT . C 3 HOH A 102 1101 1101 HOH WAT . C 3 HOH A 103 1102 1102 HOH WAT . C 3 HOH A 104 1103 1103 HOH WAT . C 3 HOH A 105 1104 1104 HOH WAT . C 3 HOH A 106 1105 1105 HOH WAT . C 3 HOH A 107 1106 1106 HOH WAT . C 3 HOH A 108 1107 1107 HOH WAT . C 3 HOH A 109 1108 1108 HOH WAT . C 3 HOH A 110 1109 1109 HOH WAT . C 3 HOH A 111 1110 1110 HOH WAT . C 3 HOH A 112 1111 1111 HOH WAT . C 3 HOH A 113 1112 1112 HOH WAT . C 3 HOH A 114 1113 1113 HOH WAT . C 3 HOH A 115 1114 1114 HOH WAT . C 3 HOH A 116 1115 1115 HOH WAT . C 3 HOH A 117 1116 1116 HOH WAT . C 3 HOH A 118 1117 1117 HOH WAT . C 3 HOH A 119 1118 1118 HOH WAT . C 3 HOH A 120 1119 1119 HOH WAT . C 3 HOH A 121 1120 1120 HOH WAT . C 3 HOH A 122 1121 1121 HOH WAT . C 3 HOH A 123 1122 1122 HOH WAT . C 3 HOH A 124 1123 1123 HOH WAT . C 3 HOH A 125 1124 1124 HOH WAT . C 3 HOH A 126 1125 1125 HOH WAT . C 3 HOH A 127 1126 1126 HOH WAT . C 3 HOH A 128 1127 1127 HOH WAT . C 3 HOH A 129 1128 1128 HOH WAT . C 3 HOH A 130 1129 1129 HOH WAT . C 3 HOH A 131 1130 1130 HOH WAT . C 3 HOH A 132 1131 1131 HOH WAT . C 3 HOH A 133 1132 1132 HOH WAT . C 3 HOH A 134 1133 1133 HOH WAT . C 3 HOH A 135 1134 1134 HOH WAT . C 3 HOH A 136 1135 1135 HOH WAT . C 3 HOH A 137 1136 1136 HOH WAT . C 3 HOH A 138 1137 1137 HOH WAT . C 3 HOH A 139 1138 1138 HOH WAT . C 3 HOH A 140 1139 1139 HOH WAT . C 3 HOH A 141 1140 1140 HOH WAT . C 3 HOH A 142 1141 1141 HOH WAT . C 3 HOH A 143 1142 1142 HOH WAT . C 3 HOH A 144 1143 1143 HOH WAT . C 3 HOH A 145 1144 1144 HOH WAT . C 3 HOH A 146 1145 1145 HOH WAT . C 3 HOH A 147 1146 1146 HOH WAT . C 3 HOH A 148 1147 1147 HOH WAT . C 3 HOH A 149 1148 1148 HOH WAT . C 3 HOH A 150 1149 1149 HOH WAT . C 3 HOH A 151 1150 1150 HOH WAT . C 3 HOH A 152 1151 1151 HOH WAT . C 3 HOH A 153 1152 1152 HOH WAT . C 3 HOH A 154 1153 1153 HOH WAT . C 3 HOH A 155 1154 1154 HOH WAT . C 3 HOH A 156 1155 1155 HOH WAT . C 3 HOH A 157 1156 1156 HOH WAT . C 3 HOH A 158 1157 1157 HOH WAT . C 3 HOH A 159 1158 1158 HOH WAT . C 3 HOH A 160 1159 1159 HOH WAT . C 3 HOH A 161 1160 1160 HOH WAT . C 3 HOH A 162 1161 1161 HOH WAT . C 3 HOH A 163 1162 1162 HOH WAT . C 3 HOH A 164 1163 1163 HOH WAT . C 3 HOH A 165 1164 1164 HOH WAT . C 3 HOH A 166 1165 1165 HOH WAT . C 3 HOH A 167 1166 1166 HOH WAT . C 3 HOH A 168 1167 1167 HOH WAT . C 3 HOH A 169 1168 1168 HOH WAT . C 3 HOH A 170 1169 1169 HOH WAT . C 3 HOH A 171 1170 1170 HOH WAT . C 3 HOH A 172 1171 1171 HOH WAT . C 3 HOH A 173 1172 1172 HOH WAT . C 3 HOH A 174 1173 1173 HOH WAT . C 3 HOH A 175 1174 1174 HOH WAT . C 3 HOH A 176 1175 1175 HOH WAT . C 3 HOH A 177 1176 1176 HOH WAT . C 3 HOH A 178 1177 1177 HOH WAT . C 3 HOH A 179 1178 1178 HOH WAT . C 3 HOH A 180 1179 1179 HOH WAT . C 3 HOH A 181 1180 1180 HOH WAT . C 3 HOH A 182 1181 1181 HOH WAT . C 3 HOH A 183 1182 1182 HOH WAT . C 3 HOH A 184 1183 1183 HOH WAT . C 3 HOH A 185 1184 1184 HOH WAT . C 3 HOH A 186 1185 1185 HOH WAT . C 3 HOH A 187 1186 1186 HOH WAT . C 3 HOH A 188 1187 1187 HOH WAT . C 3 HOH A 189 1188 1188 HOH WAT . C 3 HOH A 190 1189 1189 HOH WAT . C 3 HOH A 191 1190 1190 HOH WAT . C 3 HOH A 192 1191 1191 HOH WAT . C 3 HOH A 193 1192 1192 HOH WAT . C 3 HOH A 194 1193 1193 HOH WAT . C 3 HOH A 195 1194 1194 HOH WAT . C 3 HOH A 196 1195 1195 HOH WAT . C 3 HOH A 197 1196 1196 HOH WAT . C 3 HOH A 198 1197 1197 HOH WAT . C 3 HOH A 199 1198 1198 HOH WAT . C 3 HOH A 200 1199 1199 HOH WAT . C 3 HOH A 201 1200 1200 HOH WAT . C 3 HOH A 202 1201 1201 HOH WAT . C 3 HOH A 203 1202 1202 HOH WAT . C 3 HOH A 204 1203 1203 HOH WAT . C 3 HOH A 205 1204 1204 HOH WAT . C 3 HOH A 206 1205 1205 HOH WAT . C 3 HOH A 207 1206 1206 HOH WAT . C 3 HOH A 208 1207 1207 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OXC . . . B 2 30.265 27.584 36.605 1 13.41 ? N1 OXC 999 A 1 HETATM 2 C C2 OXC . . . B 2 29.566 27.406 37.763 1 14.5 ? C2 OXC 999 A 1 HETATM 3 O O2 OXC . . . B 2 28.391 27.777 37.86 1 15.76 ? O2 OXC 999 A 1 HETATM 4 N N3 OXC . . . B 2 30.187 26.768 38.808 1 14.81 ? N3 OXC 999 A 1 HETATM 5 C C4 OXC . . . B 2 31.449 26.391 38.663 1 14.72 ? C4 OXC 999 A 1 HETATM 6 N N5 OXC . . . B 2 32.165 26.587 37.544 1 14.77 ? N5 OXC 999 A 1 HETATM 7 C C6 OXC . . . B 2 31.558 27.212 36.381 1 13.82 ? C6 OXC 999 A 1 HETATM 8 O O6 OXC . . . B 2 32.108 27.435 35.323 1 17.27 ? O6 OXC 999 A 1 HETATM 9 C CG OXC . . . B 2 32.163 25.77 39.834 1 15.6 ? CG OXC 999 A 1 HETATM 10 O OD1 OXC . . . B 2 33.401 25.632 39.69 1 15.79 ? OD1 OXC 999 A 1 HETATM 11 O OD2 OXC . . . B 2 31.531 25.488 40.856 1 18.32 ? OD2 OXC 999 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #