data_1R5C
#
_model_server_result.job_id            b7OnnkrI3O0omFjEe5zaOw 
_model_server_result.datetime_utc      '2024-12-11 07:40:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1r5c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":126}' 
#
_entry.id    1R5C 
#
_exptl.entry_id    1R5C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              540.424 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1R5C 
_cell.length_a            49.54 
_cell.length_b            60.02 
_cell.length_c            83.69 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1R5C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 31 A CYS 31 1_555 B SG CYS 32 B CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 A SG CYS 32 A CYS 32 1_555 B SG CYS 31 B CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf6 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf8 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf9 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf10 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
#
_chem_comp.formula           'C19 H25 N8 O9 P' 
_chem_comp.formula_weight    540.424 
_chem_comp.id                CPA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P CPA doub 70 n n 
P O2P CPA sing 71 n n 
P O3D CPA sing 72 n n 
P O5B CPA sing 73 n n 
O2P HOP2 CPA sing 74 n n 
O5D C5X CPA sing 75 n n 
O5D HO5C CPA sing 76 n n 
C5X C4X CPA sing 77 n n 
C5X H51C CPA sing 78 n n 
C5X H52C CPA sing 79 n n 
C4X O4D CPA sing 80 n n 
C4X C3X CPA sing 81 n n 
C4X H4D CPA sing 82 n n 
O4D C1X CPA sing 83 n n 
C3X O3D CPA sing 84 n n 
C3X C2X CPA sing 85 n n 
C3X H3D CPA sing 86 n n 
C2X C1X CPA sing 87 n n 
C2X H21C CPA sing 88 n n 
C2X H22C CPA sing 89 n n 
C1X N1C CPA sing 90 n n 
C1X H1D CPA sing 91 n n 
N1C CC2 CPA sing 92 n n 
N1C CC6 CPA sing 93 n n 
CC2 N3C CPA sing 94 n n 
CC2 O2C CPA doub 95 n n 
N3C CC4 CPA doub 96 n n 
CC4 CC5 CPA sing 97 n n 
CC4 N4C CPA sing 98 n n 
CC5 CC6 CPA doub 99 n n 
CC5 H5C CPA sing 100 n n 
CC6 H6C CPA sing 101 n n 
N4C H41C CPA sing 102 n n 
N4C H42C CPA sing 103 n n 
O5B C5B CPA sing 104 n n 
C5B C4B CPA sing 105 n n 
C5B H51A CPA sing 106 n n 
C5B H52A CPA sing 107 n n 
C4B O4B CPA sing 108 n n 
C4B C3B CPA sing 109 n n 
C4B H4B CPA sing 110 n n 
O4B C1B CPA sing 111 n n 
C3B O3B CPA sing 112 n n 
C3B C2B CPA sing 113 n n 
C3B H3B CPA sing 114 n n 
O3B HO3A CPA sing 115 n n 
C2B C1B CPA sing 116 n n 
C2B H21A CPA sing 117 n n 
C2B H22A CPA sing 118 n n 
C1B N9A CPA sing 119 n n 
C1B H1B CPA sing 120 n n 
N9A C8A CPA sing 121 n y 
N9A C4A CPA sing 122 n y 
C8A N7A CPA doub 123 n y 
C8A H8A CPA sing 124 n n 
N7A C5A CPA sing 125 n y 
C5A C6A CPA sing 126 n y 
C5A C4A CPA doub 127 n y 
C6A N6A CPA sing 128 n n 
C6A N1A CPA doub 129 n y 
N6A H61A CPA sing 130 n n 
N6A H62A CPA sing 131 n n 
N1A C2A CPA sing 132 n y 
C2A N3A CPA doub 133 n y 
C2A H2A CPA sing 134 n n 
N3A C4A CPA sing 135 n y 
#
_atom_sites.entry_id                     1R5C 
_atom_sites.fract_transf_matrix[1][1]    0.02019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01666 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01195 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CPA A 1 125 125 CPA CPA . 
D 2 CPA B 1 126 126 CPA CPA . 
E 3 HOH A 1 131 131 HOH HOH . 
E 3 HOH A 2 132 132 HOH HOH . 
E 3 HOH A 3 133 133 HOH HOH . 
E 3 HOH A 4 138 138 HOH HOH . 
E 3 HOH A 5 142 142 HOH HOH . 
E 3 HOH A 6 143 143 HOH HOH . 
E 3 HOH A 7 147 147 HOH HOH . 
E 3 HOH A 8 151 151 HOH HOH . 
E 3 HOH A 9 161 161 HOH HOH . 
E 3 HOH A 10 165 165 HOH HOH . 
E 3 HOH A 11 167 167 HOH HOH . 
E 3 HOH A 12 170 170 HOH HOH . 
E 3 HOH A 13 186 186 HOH HOH . 
E 3 HOH A 14 187 187 HOH HOH . 
E 3 HOH A 15 203 203 HOH HOH . 
E 3 HOH A 16 207 207 HOH HOH . 
E 3 HOH A 17 208 208 HOH HOH . 
E 3 HOH A 18 210 210 HOH HOH . 
E 3 HOH A 19 215 215 HOH HOH . 
E 3 HOH A 20 217 217 HOH HOH . 
E 3 HOH A 21 218 218 HOH HOH . 
E 3 HOH A 22 226 226 HOH HOH . 
E 3 HOH A 23 227 227 HOH HOH . 
E 3 HOH A 24 232 232 HOH HOH . 
E 3 HOH A 25 233 233 HOH HOH . 
E 3 HOH A 26 240 240 HOH HOH . 
E 3 HOH A 27 241 241 HOH HOH . 
E 3 HOH A 28 247 247 HOH HOH . 
E 3 HOH A 29 262 262 HOH HOH . 
E 3 HOH A 30 265 265 HOH HOH . 
E 3 HOH A 31 266 266 HOH HOH . 
E 3 HOH A 32 639 639 HOH HOH . 
E 3 HOH A 33 641 641 HOH HOH . 
E 3 HOH A 34 642 642 HOH HOH . 
E 3 HOH A 35 653 653 HOH HOH . 
E 3 HOH A 36 657 657 HOH HOH . 
E 3 HOH A 37 663 663 HOH HOH . 
E 3 HOH A 38 664 664 HOH HOH . 
E 3 HOH A 39 666 666 HOH HOH . 
E 3 HOH A 40 667 667 HOH HOH . 
E 3 HOH A 41 669 669 HOH HOH . 
E 3 HOH A 42 674 674 HOH HOH . 
E 3 HOH A 43 675 675 HOH HOH . 
E 3 HOH A 44 677 677 HOH HOH . 
E 3 HOH A 45 678 678 HOH HOH . 
E 3 HOH A 46 687 687 HOH HOH . 
F 3 HOH B 1 135 135 HOH HOH . 
F 3 HOH B 2 136 136 HOH HOH . 
F 3 HOH B 3 139 139 HOH HOH . 
F 3 HOH B 4 140 140 HOH HOH . 
F 3 HOH B 5 146 146 HOH HOH . 
F 3 HOH B 6 148 148 HOH HOH . 
F 3 HOH B 7 149 149 HOH HOH . 
F 3 HOH B 8 150 150 HOH HOH . 
F 3 HOH B 9 153 153 HOH HOH . 
F 3 HOH B 10 155 155 HOH HOH . 
F 3 HOH B 11 157 157 HOH HOH . 
F 3 HOH B 12 158 158 HOH HOH . 
F 3 HOH B 13 159 159 HOH HOH . 
F 3 HOH B 14 162 162 HOH HOH . 
F 3 HOH B 15 164 164 HOH HOH . 
F 3 HOH B 16 168 168 HOH HOH . 
F 3 HOH B 17 171 171 HOH HOH . 
F 3 HOH B 18 172 172 HOH HOH . 
F 3 HOH B 19 200 200 HOH HOH . 
F 3 HOH B 20 202 202 HOH HOH . 
F 3 HOH B 21 209 209 HOH HOH . 
F 3 HOH B 22 214 214 HOH HOH . 
F 3 HOH B 23 221 221 HOH HOH . 
F 3 HOH B 24 222 222 HOH HOH . 
F 3 HOH B 25 223 223 HOH HOH . 
F 3 HOH B 26 224 224 HOH HOH . 
F 3 HOH B 27 225 225 HOH HOH . 
F 3 HOH B 28 229 229 HOH HOH . 
F 3 HOH B 29 234 234 HOH HOH . 
F 3 HOH B 30 237 237 HOH HOH . 
F 3 HOH B 31 243 243 HOH HOH . 
F 3 HOH B 32 251 251 HOH HOH . 
F 3 HOH B 33 255 255 HOH HOH . 
F 3 HOH B 34 259 259 HOH HOH . 
F 3 HOH B 35 260 260 HOH HOH . 
F 3 HOH B 36 261 261 HOH HOH . 
F 3 HOH B 37 632 632 HOH HOH . 
F 3 HOH B 38 638 638 HOH HOH . 
F 3 HOH B 39 640 640 HOH HOH . 
F 3 HOH B 40 643 643 HOH HOH . 
F 3 HOH B 41 644 644 HOH HOH . 
F 3 HOH B 42 647 647 HOH HOH . 
F 3 HOH B 43 648 648 HOH HOH . 
F 3 HOH B 44 649 649 HOH HOH . 
F 3 HOH B 45 686 686 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CPA . . . D 2 11.247 12.092 20.498 1 27.88 ? P CPA 126 B 1 
HETATM 2 O O1P CPA . . . D 2 10.286 12.836 19.661 1 31.98 ? O1P CPA 126 B 1 
HETATM 3 O O2P CPA . . . D 2 12.056 12.777 21.52 1 33.76 ? O2P CPA 126 B 1 
HETATM 4 O O5D CPA . . . D 2 12.015 7.295 19.346 1 29.88 ? O5D CPA 126 B 1 
HETATM 5 C C5X CPA . . . D 2 13.19 8.105 19.203 1 28.26 ? C5X CPA 126 B 1 
HETATM 6 C C4X CPA . . . D 2 12.891 9.311 18.347 1 28.22 ? C4X CPA 126 B 1 
HETATM 7 O O4D CPA . . . D 2 12.559 8.888 17.009 1 28.53 ? O4D CPA 126 B 1 
HETATM 8 C C3X CPA . . . D 2 11.698 10.149 18.807 1 29.59 ? C3X CPA 126 B 1 
HETATM 9 O O3D CPA . . . D 2 12.183 11.317 19.468 1 30.37 ? O3D CPA 126 B 1 
HETATM 10 C C2X CPA . . . D 2 11.107 10.721 17.513 1 28.41 ? C2X CPA 126 B 1 
HETATM 11 C C1X CPA . . . D 2 11.789 9.909 16.422 1 25.51 ? C1X CPA 126 B 1 
HETATM 12 N N1C CPA . . . D 2 10.924 9.386 15.358 1 21.18 ? N1C CPA 126 B 1 
HETATM 13 C CC2 CPA . . . D 2 10.37 10.317 14.474 1 18.12 ? CC2 CPA 126 B 1 
HETATM 14 N N3C CPA . . . D 2 9.654 9.883 13.425 1 17.58 ? N3C CPA 126 B 1 
HETATM 15 C CC4 CPA . . . D 2 9.45 8.578 13.25 1 20.45 ? CC4 CPA 126 B 1 
HETATM 16 C CC5 CPA . . . D 2 9.964 7.603 14.164 1 18.84 ? CC5 CPA 126 B 1 
HETATM 17 C CC6 CPA . . . D 2 10.687 8.053 15.198 1 20.62 ? CC6 CPA 126 B 1 
HETATM 18 O O2C CPA . . . D 2 10.543 11.521 14.688 1 14.7 ? O2C CPA 126 B 1 
HETATM 19 N N4C CPA . . . D 2 8.74 8.199 12.192 1 18.83 ? N4C CPA 126 B 1 
HETATM 20 O O5B CPA . . . D 2 10.417 10.97 21.236 1 34.37 ? O5B CPA 126 B 1 
HETATM 21 C C5B CPA . . . D 2 11.071 9.844 21.843 1 41.8 ? C5B CPA 126 B 1 
HETATM 22 C C4B CPA . . . D 2 11.427 10.164 23.28 1 45.13 ? C4B CPA 126 B 1 
HETATM 23 O O4B CPA . . . D 2 10.269 10.756 23.941 1 46.35 ? O4B CPA 126 B 1 
HETATM 24 C C3B CPA . . . D 2 11.761 8.932 24.112 1 45.96 ? C3B CPA 126 B 1 
HETATM 25 O O3B CPA . . . D 2 13.146 8.602 24.025 1 48.81 ? O3B CPA 126 B 1 
HETATM 26 C C2B CPA . . . D 2 11.364 9.374 25.515 1 46.37 ? C2B CPA 126 B 1 
HETATM 27 C C1B CPA . . . D 2 10.097 10.181 25.227 1 44.52 ? C1B CPA 126 B 1 
HETATM 28 N N9A CPA . . . D 2 8.904 9.337 25.173 1 42.14 ? N9A CPA 126 B 1 
HETATM 29 C C8A CPA . . . D 2 8.772 8.123 24.543 1 41.84 ? C8A CPA 126 B 1 
HETATM 30 N N7A CPA . . . D 2 7.583 7.591 24.662 1 41.62 ? N7A CPA 126 B 1 
HETATM 31 C C5A CPA . . . D 2 6.88 8.519 25.425 1 40.9 ? C5A CPA 126 B 1 
HETATM 32 C C6A CPA . . . D 2 5.559 8.542 25.903 1 40.52 ? C6A CPA 126 B 1 
HETATM 33 N N6A CPA . . . D 2 4.662 7.581 25.663 1 39.08 ? N6A CPA 126 B 1 
HETATM 34 N N1A CPA . . . D 2 5.182 9.613 26.634 1 40.27 ? N1A CPA 126 B 1 
HETATM 35 C C2A CPA . . . D 2 6.078 10.581 26.864 1 39.43 ? C2A CPA 126 B 1 
HETATM 36 N N3A CPA . . . D 2 7.338 10.672 26.468 1 39.24 ? N3A CPA 126 B 1 
HETATM 37 C C4A CPA . . . D 2 7.687 9.593 25.747 1 40.6 ? C4A CPA 126 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#