data_1R5K # _model_server_result.job_id '_SciZmzCpnVbg2oQXtHOeg' _model_server_result.datetime_utc '2024-10-12 07:26:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 1R5K # _exptl.entry_id 1R5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-3-{4-[(1E)-1,2-DIPHENYLBUT-1-ENYL]PHENYL}ACRYLIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R5K _cell.length_a 136.031 _cell.length_b 136.031 _cell.length_c 357.626 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,G,H 1 1 C,F,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+11/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 68.0155 117.806302 655.647667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C25 H22 O2' _chem_comp.formula_weight 354.441 _chem_comp.id GW5 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-3-{4-[(1E)-1,2-DIPHENYLBUT-1-ENYL]PHENYL}ACRYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GW5638;DPC 974' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 GW5 doub 129 n y C21 C20 GW5 sing 130 n y C21 H21 GW5 sing 131 n n C22 C23 GW5 sing 132 n y C22 H22 GW5 sing 133 n n C23 C24 GW5 doub 134 n y C23 H23 GW5 sing 135 n n C24 C25 GW5 sing 136 n y C24 H24 GW5 sing 137 n n C25 C20 GW5 doub 138 n y C25 H25 GW5 sing 139 n n C20 C3 GW5 sing 140 n n C3 C2 GW5 sing 141 n n C3 C4 GW5 doub 142 z n C2 C1 GW5 sing 143 n n C2 H21A GW5 sing 144 n n C2 H22A GW5 sing 145 n n C1 H11 GW5 sing 146 n n C1 H12A GW5 sing 147 n n C1 H13A GW5 sing 148 n n C4 C5 GW5 sing 149 n n C4 C11 GW5 sing 150 n n C5 C6 GW5 doub 151 n y C5 C10 GW5 sing 152 n y C6 C7 GW5 sing 153 n y C6 H6 GW5 sing 154 n n C7 C8 GW5 doub 155 n y C7 H7 GW5 sing 156 n n C8 C9 GW5 sing 157 n y C8 H8 GW5 sing 158 n n C9 C10 GW5 doub 159 n y C9 H9 GW5 sing 160 n n C10 H10 GW5 sing 161 n n C11 C19 GW5 doub 162 n y C11 C12 GW5 sing 163 n y C19 C18 GW5 sing 164 n y C19 H19 GW5 sing 165 n n C18 C14 GW5 doub 166 n y C18 H18 GW5 sing 167 n n C12 C13 GW5 doub 168 n y C12 H12 GW5 sing 169 n n C13 C14 GW5 sing 170 n y C13 H13 GW5 sing 171 n n C14 C15 GW5 sing 172 n n C15 C16 GW5 doub 173 e n C15 H15 GW5 sing 174 n n C16 C17 GW5 sing 175 n n C16 H16 GW5 sing 176 n n C17 O2 GW5 sing 177 n n C17 O1 GW5 doub 178 n n O2 HO2 GW5 sing 179 n n # _atom_sites.entry_id 1R5K _atom_sites.fract_transf_matrix[1][1] 0.007351 _atom_sites.fract_transf_matrix[1][2] 0.004244 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GW5 A 1 600 600 GW5 GW5 . E 2 GW5 B 1 601 601 GW5 GW5 . F 2 GW5 C 1 602 602 GW5 GW5 . G 3 HOH A 1 700 700 HOH HOH . G 3 HOH A 2 702 702 HOH HOH . G 3 HOH A 3 703 703 HOH HOH . G 3 HOH A 4 704 704 HOH HOH . G 3 HOH A 5 705 705 HOH HOH . G 3 HOH A 6 706 706 HOH HOH . G 3 HOH A 7 711 711 HOH HOH . G 3 HOH A 8 714 714 HOH HOH . G 3 HOH A 9 715 715 HOH HOH . G 3 HOH A 10 717 717 HOH HOH . G 3 HOH A 11 718 718 HOH HOH . G 3 HOH A 12 720 720 HOH HOH . G 3 HOH A 13 721 721 HOH HOH . G 3 HOH A 14 735 735 HOH HOH . G 3 HOH A 15 739 739 HOH HOH . H 3 HOH B 1 701 701 HOH HOH . H 3 HOH B 2 708 708 HOH HOH . H 3 HOH B 3 710 710 HOH HOH . H 3 HOH B 4 712 712 HOH HOH . H 3 HOH B 5 713 713 HOH HOH . H 3 HOH B 6 716 716 HOH HOH . H 3 HOH B 7 719 719 HOH HOH . H 3 HOH B 8 722 722 HOH HOH . H 3 HOH B 9 723 723 HOH HOH . H 3 HOH B 10 724 724 HOH HOH . H 3 HOH B 11 736 736 HOH HOH . H 3 HOH B 12 737 737 HOH HOH . I 3 HOH C 1 707 707 HOH HOH . I 3 HOH C 2 725 725 HOH HOH . I 3 HOH C 3 726 726 HOH HOH . I 3 HOH C 4 727 727 HOH HOH . I 3 HOH C 5 728 728 HOH HOH . I 3 HOH C 6 729 729 HOH HOH . I 3 HOH C 7 730 730 HOH HOH . I 3 HOH C 8 731 731 HOH HOH . I 3 HOH C 9 732 732 HOH HOH . I 3 HOH C 10 733 733 HOH HOH . I 3 HOH C 11 734 734 HOH HOH . I 3 HOH C 12 738 738 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 GW5 . . . E 2 -16.505 20.801 335.341 1 68.1 ? C21 GW5 601 B 1 HETATM 2 C C22 GW5 . . . E 2 -15.55 21.309 334.474 1 67.56 ? C22 GW5 601 B 1 HETATM 3 C C23 GW5 . . . E 2 -15.811 22.506 333.805 1 67.92 ? C23 GW5 601 B 1 HETATM 4 C C24 GW5 . . . E 2 -17.003 23.209 333.968 1 67.44 ? C24 GW5 601 B 1 HETATM 5 C C25 GW5 . . . E 2 -17.956 22.685 334.833 1 68.03 ? C25 GW5 601 B 1 HETATM 6 C C20 GW5 . . . E 2 -17.704 21.486 335.506 1 68.92 ? C20 GW5 601 B 1 HETATM 7 C C3 GW5 . . . E 2 -18.652 20.956 336.364 1 70.36 ? C3 GW5 601 B 1 HETATM 8 C C2 GW5 . . . E 2 -18.243 20.403 337.709 1 71.62 ? C2 GW5 601 B 1 HETATM 9 C C1 GW5 . . . E 2 -17.522 21.48 338.519 1 73.25 ? C1 GW5 601 B 1 HETATM 10 C C4 GW5 . . . E 2 -19.991 20.915 335.986 1 70.83 ? C4 GW5 601 B 1 HETATM 11 C C5 GW5 . . . E 2 -20.887 20.388 336.919 1 71.73 ? C5 GW5 601 B 1 HETATM 12 C C6 GW5 . . . E 2 -21.57 19.205 336.689 1 72.49 ? C6 GW5 601 B 1 HETATM 13 C C7 GW5 . . . E 2 -22.491 18.717 337.615 1 73.14 ? C7 GW5 601 B 1 HETATM 14 C C8 GW5 . . . E 2 -22.758 19.414 338.789 1 73.52 ? C8 GW5 601 B 1 HETATM 15 C C9 GW5 . . . E 2 -22.081 20.598 339.017 1 73.28 ? C9 GW5 601 B 1 HETATM 16 C C10 GW5 . . . E 2 -21.156 21.077 338.091 1 72.6 ? C10 GW5 601 B 1 HETATM 17 C C11 GW5 . . . E 2 -20.446 20.904 334.647 1 70.24 ? C11 GW5 601 B 1 HETATM 18 C C19 GW5 . . . E 2 -21.701 21.428 334.35 1 69.62 ? C19 GW5 601 B 1 HETATM 19 C C18 GW5 . . . E 2 -22.183 21.434 333.056 1 70.68 ? C18 GW5 601 B 1 HETATM 20 C C12 GW5 . . . E 2 -19.704 20.351 333.609 1 70.02 ? C12 GW5 601 B 1 HETATM 21 C C13 GW5 . . . E 2 -20.183 20.356 332.306 1 70.14 ? C13 GW5 601 B 1 HETATM 22 C C14 GW5 . . . E 2 -21.428 20.886 332.019 1 71.44 ? C14 GW5 601 B 1 HETATM 23 C C15 GW5 . . . E 2 -21.897 20.858 330.704 1 72.83 ? C15 GW5 601 B 1 HETATM 24 C C16 GW5 . . . E 2 -23.15 21.348 330.31 1 75.14 ? C16 GW5 601 B 1 HETATM 25 C C17 GW5 . . . E 2 -23.505 21.26 328.947 1 76.67 ? C17 GW5 601 B 1 HETATM 26 O O2 GW5 . . . E 2 -24.592 21.659 328.491 1 76.29 ? O2 GW5 601 B 1 HETATM 27 O O1 GW5 . . . E 2 -22.672 20.776 328.177 1 77.68 ? O1 GW5 601 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #