data_1R5K
#
_model_server_result.job_id            q0Lnc-Hvghn1pDpHKNuk3Q 
_model_server_result.datetime_utc      '2024-10-12 07:31:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1r5k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    1R5K 
#
_exptl.entry_id    1R5K 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              354.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2E)-3-{4-[(1E)-1,2-DIPHENYLBUT-1-ENYL]PHENYL}ACRYLIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1R5K 
_cell.length_a            136.031 
_cell.length_b            136.031 
_cell.length_c            357.626 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1R5K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,G,H 1 1 
C,F,I 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+11/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 68.0155 117.806302 655.647667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C25 H22 O2' 
_chem_comp.formula_weight    354.441 
_chem_comp.id                GW5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2E)-3-{4-[(1E)-1,2-DIPHENYLBUT-1-ENYL]PHENYL}ACRYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'GW5638;DPC 974' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C22 GW5 doub 129 n y 
C21 C20 GW5 sing 130 n y 
C21 H21 GW5 sing 131 n n 
C22 C23 GW5 sing 132 n y 
C22 H22 GW5 sing 133 n n 
C23 C24 GW5 doub 134 n y 
C23 H23 GW5 sing 135 n n 
C24 C25 GW5 sing 136 n y 
C24 H24 GW5 sing 137 n n 
C25 C20 GW5 doub 138 n y 
C25 H25 GW5 sing 139 n n 
C20 C3 GW5 sing 140 n n 
C3 C2 GW5 sing 141 n n 
C3 C4 GW5 doub 142 z n 
C2 C1 GW5 sing 143 n n 
C2 H21A GW5 sing 144 n n 
C2 H22A GW5 sing 145 n n 
C1 H11 GW5 sing 146 n n 
C1 H12A GW5 sing 147 n n 
C1 H13A GW5 sing 148 n n 
C4 C5 GW5 sing 149 n n 
C4 C11 GW5 sing 150 n n 
C5 C6 GW5 doub 151 n y 
C5 C10 GW5 sing 152 n y 
C6 C7 GW5 sing 153 n y 
C6 H6 GW5 sing 154 n n 
C7 C8 GW5 doub 155 n y 
C7 H7 GW5 sing 156 n n 
C8 C9 GW5 sing 157 n y 
C8 H8 GW5 sing 158 n n 
C9 C10 GW5 doub 159 n y 
C9 H9 GW5 sing 160 n n 
C10 H10 GW5 sing 161 n n 
C11 C19 GW5 doub 162 n y 
C11 C12 GW5 sing 163 n y 
C19 C18 GW5 sing 164 n y 
C19 H19 GW5 sing 165 n n 
C18 C14 GW5 doub 166 n y 
C18 H18 GW5 sing 167 n n 
C12 C13 GW5 doub 168 n y 
C12 H12 GW5 sing 169 n n 
C13 C14 GW5 sing 170 n y 
C13 H13 GW5 sing 171 n n 
C14 C15 GW5 sing 172 n n 
C15 C16 GW5 doub 173 e n 
C15 H15 GW5 sing 174 n n 
C16 C17 GW5 sing 175 n n 
C16 H16 GW5 sing 176 n n 
C17 O2 GW5 sing 177 n n 
C17 O1 GW5 doub 178 n n 
O2 HO2 GW5 sing 179 n n 
#
_atom_sites.entry_id                     1R5K 
_atom_sites.fract_transf_matrix[1][1]    0.007351 
_atom_sites.fract_transf_matrix[1][2]    0.004244 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008489 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002796 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GW5 A 1 600 600 GW5 GW5 . 
E 2 GW5 B 1 601 601 GW5 GW5 . 
F 2 GW5 C 1 602 602 GW5 GW5 . 
G 3 HOH A 1 700 700 HOH HOH . 
G 3 HOH A 2 702 702 HOH HOH . 
G 3 HOH A 3 703 703 HOH HOH . 
G 3 HOH A 4 704 704 HOH HOH . 
G 3 HOH A 5 705 705 HOH HOH . 
G 3 HOH A 6 706 706 HOH HOH . 
G 3 HOH A 7 711 711 HOH HOH . 
G 3 HOH A 8 714 714 HOH HOH . 
G 3 HOH A 9 715 715 HOH HOH . 
G 3 HOH A 10 717 717 HOH HOH . 
G 3 HOH A 11 718 718 HOH HOH . 
G 3 HOH A 12 720 720 HOH HOH . 
G 3 HOH A 13 721 721 HOH HOH . 
G 3 HOH A 14 735 735 HOH HOH . 
G 3 HOH A 15 739 739 HOH HOH . 
H 3 HOH B 1 701 701 HOH HOH . 
H 3 HOH B 2 708 708 HOH HOH . 
H 3 HOH B 3 710 710 HOH HOH . 
H 3 HOH B 4 712 712 HOH HOH . 
H 3 HOH B 5 713 713 HOH HOH . 
H 3 HOH B 6 716 716 HOH HOH . 
H 3 HOH B 7 719 719 HOH HOH . 
H 3 HOH B 8 722 722 HOH HOH . 
H 3 HOH B 9 723 723 HOH HOH . 
H 3 HOH B 10 724 724 HOH HOH . 
H 3 HOH B 11 736 736 HOH HOH . 
H 3 HOH B 12 737 737 HOH HOH . 
I 3 HOH C 1 707 707 HOH HOH . 
I 3 HOH C 2 725 725 HOH HOH . 
I 3 HOH C 3 726 726 HOH HOH . 
I 3 HOH C 4 727 727 HOH HOH . 
I 3 HOH C 5 728 728 HOH HOH . 
I 3 HOH C 6 729 729 HOH HOH . 
I 3 HOH C 7 730 730 HOH HOH . 
I 3 HOH C 8 731 731 HOH HOH . 
I 3 HOH C 9 732 732 HOH HOH . 
I 3 HOH C 10 733 733 HOH HOH . 
I 3 HOH C 11 734 734 HOH HOH . 
I 3 HOH C 12 738 738 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 GW5 . . . F 2 8.617 58.61 322.496 1 60.18 ? C21 GW5 602 C 1 
HETATM 2 C C22 GW5 . . . F 2 8.195 59.948 322.505 1 60.65 ? C22 GW5 602 C 1 
HETATM 3 C C23 GW5 . . . F 2 8.671 60.852 323.459 1 60.05 ? C23 GW5 602 C 1 
HETATM 4 C C24 GW5 . . . F 2 9.568 60.404 324.422 1 59.67 ? C24 GW5 602 C 1 
HETATM 5 C C25 GW5 . . . F 2 9.981 59.076 324.425 1 59.89 ? C25 GW5 602 C 1 
HETATM 6 C C20 GW5 . . . F 2 9.495 58.166 323.474 1 60.67 ? C20 GW5 602 C 1 
HETATM 7 C C3 GW5 . . . F 2 9.962 56.849 323.46 1 61.24 ? C3 GW5 602 C 1 
HETATM 8 C C2 GW5 . . . F 2 10.665 56.321 322.222 1 61.97 ? C2 GW5 602 C 1 
HETATM 9 C C1 GW5 . . . F 2 11.635 57.375 321.663 1 61.57 ? C1 GW5 602 C 1 
HETATM 10 C C4 GW5 . . . F 2 9.861 56.039 324.575 1 61.2 ? C4 GW5 602 C 1 
HETATM 11 C C5 GW5 . . . F 2 10.394 54.744 324.524 1 60.9 ? C5 GW5 602 C 1 
HETATM 12 C C6 GW5 . . . F 2 9.604 53.608 324.73 1 61.59 ? C6 GW5 602 C 1 
HETATM 13 C C7 GW5 . . . F 2 10.132 52.304 324.759 1 59.9 ? C7 GW5 602 C 1 
HETATM 14 C C8 GW5 . . . F 2 11.483 52.109 324.591 1 58.88 ? C8 GW5 602 C 1 
HETATM 15 C C9 GW5 . . . F 2 12.281 53.222 324.404 1 59.56 ? C9 GW5 602 C 1 
HETATM 16 C C10 GW5 . . . F 2 11.754 54.523 324.37 1 60.45 ? C10 GW5 602 C 1 
HETATM 17 C C11 GW5 . . . F 2 8.953 56.299 325.626 1 61.79 ? C11 GW5 602 C 1 
HETATM 18 C C19 GW5 . . . F 2 9.222 55.876 326.933 1 61.75 ? C19 GW5 602 C 1 
HETATM 19 C C18 GW5 . . . F 2 8.344 56.118 327.979 1 62.48 ? C18 GW5 602 C 1 
HETATM 20 C C12 GW5 . . . F 2 7.755 56.954 325.387 1 62.2 ? C12 GW5 602 C 1 
HETATM 21 C C13 GW5 . . . F 2 6.874 57.195 326.431 1 63.01 ? C13 GW5 602 C 1 
HETATM 22 C C14 GW5 . . . F 2 7.152 56.775 327.72 1 63.9 ? C14 GW5 602 C 1 
HETATM 23 C C15 GW5 . . . F 2 6.208 57.028 328.711 1 65.93 ? C15 GW5 602 C 1 
HETATM 24 C C16 GW5 . . . F 2 6.353 56.634 330.05 1 68.97 ? C16 GW5 602 C 1 
HETATM 25 C C17 GW5 . . . F 2 5.34 56.939 330.996 1 70.91 ? C17 GW5 602 C 1 
HETATM 26 O O2 GW5 . . . F 2 5.445 56.595 332.179 1 70.75 ? O2 GW5 602 C 1 
HETATM 27 O O1 GW5 . . . F 2 4.321 57.569 330.666 1 72.63 ? O1 GW5 602 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#