data_1R6A # _model_server_result.job_id Z5qqJR7KQEXgDVhf6wnDjg _model_server_result.datetime_utc '2025-03-04 06:11:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":887}' # _entry.id 1R6A # _exptl.entry_id 1R6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1R6A _cell.length_a 111.99 _cell.length_b 111.99 _cell.length_c 56.27 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 18.756667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 312 n n N HN1 SAH sing 313 n n N HN2 SAH sing 314 n n CA CB SAH sing 315 n n CA C SAH sing 316 n n CA HA SAH sing 317 n n CB CG SAH sing 318 n n CB HB1 SAH sing 319 n n CB HB2 SAH sing 320 n n CG SD SAH sing 321 n n CG HG1 SAH sing 322 n n CG HG2 SAH sing 323 n n SD C5' SAH sing 324 n n C O SAH doub 325 n n C OXT SAH sing 326 n n OXT HXT SAH sing 327 n n C5' C4' SAH sing 328 n n C5' "H5'1" SAH sing 329 n n C5' "H5'2" SAH sing 330 n n C4' O4' SAH sing 331 n n C4' C3' SAH sing 332 n n C4' H4' SAH sing 333 n n O4' C1' SAH sing 334 n n C3' O3' SAH sing 335 n n C3' C2' SAH sing 336 n n C3' H3' SAH sing 337 n n O3' HO3' SAH sing 338 n n C2' O2' SAH sing 339 n n C2' C1' SAH sing 340 n n C2' H2' SAH sing 341 n n O2' HO2' SAH sing 342 n n C1' N9 SAH sing 343 n n C1' H1' SAH sing 344 n n N9 C8 SAH sing 345 n y N9 C4 SAH sing 346 n y C8 N7 SAH doub 347 n y C8 H8 SAH sing 348 n n N7 C5 SAH sing 349 n y C5 C6 SAH sing 350 n y C5 C4 SAH doub 351 n y C6 N6 SAH sing 352 n n C6 N1 SAH doub 353 n y N6 HN61 SAH sing 354 n n N6 HN62 SAH sing 355 n n N1 C2 SAH sing 356 n y C2 N3 SAH doub 357 n y C2 H2 SAH sing 358 n n N3 C4 SAH sing 359 n y # _atom_sites.entry_id 1R6A _atom_sites.fract_transf_matrix[1][1] 0.008929 _atom_sites.fract_transf_matrix[1][2] 0.005155 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 901 SO4 SO4 . C 2 SO4 A 1 902 902 SO4 SO4 . D 2 SO4 A 1 903 903 SO4 SO4 . E 2 SO4 A 1 904 904 SO4 SO4 . F 2 SO4 A 1 905 905 SO4 SO4 . G 2 SO4 A 1 906 906 SO4 SO4 . H 2 SO4 A 1 907 907 SO4 SO4 . I 3 SAH A 1 887 887 SAH SAH . J 4 RVP A 1 300 300 RVP RVP . K 5 HOH A 1 908 1 HOH HOH . K 5 HOH A 2 909 2 HOH HOH . K 5 HOH A 3 910 3 HOH HOH . K 5 HOH A 4 911 4 HOH HOH . K 5 HOH A 5 912 5 HOH HOH . K 5 HOH A 6 913 6 HOH HOH . K 5 HOH A 7 914 7 HOH HOH . K 5 HOH A 8 915 8 HOH HOH . K 5 HOH A 9 916 9 HOH HOH . K 5 HOH A 10 917 10 HOH HOH . K 5 HOH A 11 918 11 HOH HOH . K 5 HOH A 12 919 12 HOH HOH . K 5 HOH A 13 920 13 HOH HOH . K 5 HOH A 14 921 14 HOH HOH . K 5 HOH A 15 922 15 HOH HOH . K 5 HOH A 16 923 16 HOH HOH . K 5 HOH A 17 924 17 HOH HOH . K 5 HOH A 18 925 18 HOH HOH . K 5 HOH A 19 926 19 HOH HOH . K 5 HOH A 20 927 20 HOH HOH . K 5 HOH A 21 928 21 HOH HOH . K 5 HOH A 22 929 22 HOH HOH . K 5 HOH A 23 930 23 HOH HOH . K 5 HOH A 24 931 24 HOH HOH . K 5 HOH A 25 932 25 HOH HOH . K 5 HOH A 26 933 26 HOH HOH . K 5 HOH A 27 934 27 HOH HOH . K 5 HOH A 28 935 28 HOH HOH . K 5 HOH A 29 936 29 HOH HOH . K 5 HOH A 30 937 30 HOH HOH . K 5 HOH A 31 938 31 HOH HOH . K 5 HOH A 32 939 32 HOH HOH . K 5 HOH A 33 940 33 HOH HOH . K 5 HOH A 34 941 34 HOH HOH . K 5 HOH A 35 942 35 HOH HOH . K 5 HOH A 36 943 36 HOH HOH . K 5 HOH A 37 944 37 HOH HOH . K 5 HOH A 38 945 38 HOH HOH . K 5 HOH A 39 946 39 HOH HOH . K 5 HOH A 40 947 40 HOH HOH . K 5 HOH A 41 948 41 HOH HOH . K 5 HOH A 42 949 42 HOH HOH . K 5 HOH A 43 950 43 HOH HOH . K 5 HOH A 44 951 44 HOH HOH . K 5 HOH A 45 952 45 HOH HOH . K 5 HOH A 46 953 46 HOH HOH . K 5 HOH A 47 954 47 HOH HOH . K 5 HOH A 48 955 48 HOH HOH . K 5 HOH A 49 956 49 HOH HOH . K 5 HOH A 50 957 50 HOH HOH . K 5 HOH A 51 958 51 HOH HOH . K 5 HOH A 52 959 52 HOH HOH . K 5 HOH A 53 960 53 HOH HOH . K 5 HOH A 54 961 54 HOH HOH . K 5 HOH A 55 962 55 HOH HOH . K 5 HOH A 56 963 56 HOH HOH . K 5 HOH A 57 964 57 HOH HOH . K 5 HOH A 58 965 58 HOH HOH . K 5 HOH A 59 966 59 HOH HOH . K 5 HOH A 60 967 60 HOH HOH . K 5 HOH A 61 968 61 HOH HOH . K 5 HOH A 62 969 62 HOH HOH . K 5 HOH A 63 970 63 HOH HOH . K 5 HOH A 64 971 64 HOH HOH . K 5 HOH A 65 972 65 HOH HOH . K 5 HOH A 66 973 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . I 3 9.982 -45.96 -1.241 1 57.2 ? N SAH 887 A 1 HETATM 2 C CA SAH . . . I 3 11.279 -46.635 -1.274 1 58.24 ? CA SAH 887 A 1 HETATM 3 C CB SAH . . . I 3 11.915 -46.621 0.124 1 57.89 ? CB SAH 887 A 1 HETATM 4 C CG SAH . . . I 3 13.077 -45.789 0.205 1 60.08 ? CG SAH 887 A 1 HETATM 5 S SD SAH . . . I 3 13.843 -45.757 1.844 1 63.39 ? SD SAH 887 A 1 HETATM 6 C C SAH . . . I 3 11.171 -48.106 -1.781 1 57.28 ? C SAH 887 A 1 HETATM 7 O O SAH . . . I 3 10.02 -48.473 -2.081 1 57.74 ? O SAH 887 A 1 HETATM 8 O OXT SAH . . . I 3 12.016 -48.346 -2.699 1 56.32 ? OXT SAH 887 A 1 HETATM 9 C C5' SAH . . . I 3 14.134 -43.989 1.99 1 64.02 ? C5' SAH 887 A 1 HETATM 10 C C4' SAH . . . I 3 15.339 -43.44 1.245 1 64.25 ? C4' SAH 887 A 1 HETATM 11 O O4' SAH . . . I 3 15.454 -42.026 1.491 1 63.78 ? O4' SAH 887 A 1 HETATM 12 C C3' SAH . . . I 3 16.68 -44.029 1.675 1 63.74 ? C3' SAH 887 A 1 HETATM 13 O O3' SAH . . . I 3 17.088 -44.973 0.665 1 62.65 ? O3' SAH 887 A 1 HETATM 14 C C2' SAH . . . I 3 17.659 -42.847 1.777 1 63.56 ? C2' SAH 887 A 1 HETATM 15 O O2' SAH . . . I 3 18.896 -42.955 1.1 1 67.28 ? O2' SAH 887 A 1 HETATM 16 C C1' SAH . . . I 3 16.79 -41.678 1.326 1 64.34 ? C1' SAH 887 A 1 HETATM 17 N N9 SAH . . . I 3 17.065 -40.402 1.991 1 64.73 ? N9 SAH 887 A 1 HETATM 18 C C8 SAH . . . I 3 17.259 -40.135 3.322 1 65.49 ? C8 SAH 887 A 1 HETATM 19 N N7 SAH . . . I 3 17.483 -38.871 3.582 1 65.89 ? N7 SAH 887 A 1 HETATM 20 C C5 SAH . . . I 3 17.439 -38.251 2.344 1 65.44 ? C5 SAH 887 A 1 HETATM 21 C C6 SAH . . . I 3 17.597 -36.892 1.918 1 65.21 ? C6 SAH 887 A 1 HETATM 22 N N6 SAH . . . I 3 17.847 -35.89 2.744 1 63.88 ? N6 SAH 887 A 1 HETATM 23 N N1 SAH . . . I 3 17.491 -36.613 0.577 1 65 ? N1 SAH 887 A 1 HETATM 24 C C2 SAH . . . I 3 17.239 -37.635 -0.239 1 64.58 ? C2 SAH 887 A 1 HETATM 25 N N3 SAH . . . I 3 17.067 -38.952 0.045 1 64.09 ? N3 SAH 887 A 1 HETATM 26 C C4 SAH . . . I 3 17.175 -39.197 1.341 1 65.01 ? C4 SAH 887 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #