data_1R6Q
#
_model_server_result.job_id            w_5xIp0Lf8pxVzdH6VW6sA 
_model_server_result.datetime_utc      '2024-11-22 09:36:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1r6q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":145}' 
#
_entry.id    1R6Q 
#
_exptl.entry_id    1R6Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              298.146 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE YTTRIUM' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1R6Q 
_cell.length_a            87.913 
_cell.length_b            87.913 
_cell.length_c            209.42 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1R6Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K,M,O 1 1 
B,D,H,I,J,L,N,P 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
#
_chem_comp.formula           'C8 H19 N O5 Y' 
_chem_comp.formula_weight    298.146 
_chem_comp.id                YBT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE YTTRIUM' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
Y1 O1 YBT sing 389 n n 
Y1 O2 YBT sing 390 n n 
Y1 O4 YBT sing 391 n n 
Y1 O5 YBT sing 392 n n 
Y1 N1 YBT sing 393 n n 
O1 C2 YBT sing 394 n n 
O1 HO1 YBT sing 395 n n 
O2 C3 YBT sing 396 n n 
O2 HO2 YBT sing 397 n n 
O3 C4 YBT sing 398 n n 
O3 HO3 YBT sing 399 n n 
O4 C6 YBT sing 400 n n 
O4 HO4 YBT sing 401 n n 
O5 C8 YBT sing 402 n n 
O5 HO5 YBT sing 403 n n 
N1 C1 YBT sing 404 n n 
N1 C5 YBT sing 405 n n 
N1 C7 YBT sing 406 n n 
C1 C2 YBT sing 407 n n 
C1 C3 YBT sing 408 n n 
C1 C4 YBT sing 409 n n 
C2 H21 YBT sing 410 n n 
C2 H22 YBT sing 411 n n 
C3 H31 YBT sing 412 n n 
C3 H32 YBT sing 413 n n 
C4 H41 YBT sing 414 n n 
C4 H42 YBT sing 415 n n 
C5 C6 YBT sing 416 n n 
C5 H51 YBT sing 417 n n 
C5 H52 YBT sing 418 n n 
C6 H61 YBT sing 419 n n 
C6 H62 YBT sing 420 n n 
C7 C8 YBT sing 421 n n 
C7 H71 YBT sing 422 n n 
C7 H72 YBT sing 423 n n 
C8 H81 YBT sing 424 n n 
C8 H82 YBT sing 425 n n 
#
_atom_sites.entry_id                     1R6Q 
_atom_sites.fract_transf_matrix[1][1]    0.011375 
_atom_sites.fract_transf_matrix[1][2]    0.006567 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 YBT A 1 144 2 YBT YBT . 
F 3 YBT A 1 145 4 YBT YBT . 
G 4 GOL A 1 146 10 GOL GOL . 
H 3 YBT B 1 144 1 YBT YBT . 
I 3 YBT B 1 145 3 YBT YBT . 
J 4 GOL B 1 146 11 GOL GOL . 
K 5 Y1 C 1 107 5 Y1 Y1 . 
L 5 Y1 D 1 107 6 Y1 Y1 . 
M 6 HOH A 1 147 16 HOH HOH . 
M 6 HOH A 2 148 19 HOH HOH . 
M 6 HOH A 3 149 20 HOH HOH . 
M 6 HOH A 4 150 28 HOH HOH . 
M 6 HOH A 5 151 34 HOH HOH . 
M 6 HOH A 6 152 38 HOH HOH . 
M 6 HOH A 7 153 39 HOH HOH . 
M 6 HOH A 8 154 42 HOH HOH . 
M 6 HOH A 9 155 47 HOH HOH . 
M 6 HOH A 10 156 53 HOH HOH . 
M 6 HOH A 11 157 56 HOH HOH . 
M 6 HOH A 12 158 61 HOH HOH . 
M 6 HOH A 13 159 64 HOH HOH . 
M 6 HOH A 14 160 68 HOH HOH . 
M 6 HOH A 15 161 73 HOH HOH . 
M 6 HOH A 16 162 74 HOH HOH . 
M 6 HOH A 17 163 77 HOH HOH . 
M 6 HOH A 18 164 80 HOH HOH . 
M 6 HOH A 19 165 88 HOH HOH . 
M 6 HOH A 20 166 91 HOH HOH . 
M 6 HOH A 21 167 95 HOH HOH . 
M 6 HOH A 22 168 96 HOH HOH . 
M 6 HOH A 23 169 98 HOH HOH . 
M 6 HOH A 24 170 99 HOH HOH . 
M 6 HOH A 25 171 102 HOH HOH . 
M 6 HOH A 26 172 113 HOH HOH . 
M 6 HOH A 27 173 114 HOH HOH . 
M 6 HOH A 28 174 115 HOH HOH . 
M 6 HOH A 29 175 119 HOH HOH . 
M 6 HOH A 30 176 120 HOH HOH . 
M 6 HOH A 31 177 121 HOH HOH . 
M 6 HOH A 32 178 123 HOH HOH . 
M 6 HOH A 33 179 133 HOH HOH . 
M 6 HOH A 34 180 134 HOH HOH . 
M 6 HOH A 35 181 139 HOH HOH . 
M 6 HOH A 36 182 143 HOH HOH . 
M 6 HOH A 37 183 144 HOH HOH . 
M 6 HOH A 38 184 158 HOH HOH . 
M 6 HOH A 39 185 162 HOH HOH . 
M 6 HOH A 40 186 163 HOH HOH . 
M 6 HOH A 41 187 165 HOH HOH . 
M 6 HOH A 42 188 167 HOH HOH . 
M 6 HOH A 43 189 168 HOH HOH . 
M 6 HOH A 44 190 170 HOH HOH . 
M 6 HOH A 45 191 171 HOH HOH . 
M 6 HOH A 46 192 174 HOH HOH . 
M 6 HOH A 47 193 175 HOH HOH . 
M 6 HOH A 48 194 176 HOH HOH . 
M 6 HOH A 49 195 233 HOH HOH . 
M 6 HOH A 50 196 234 HOH HOH . 
M 6 HOH A 51 197 236 HOH HOH . 
M 6 HOH A 52 198 237 HOH HOH . 
N 6 HOH B 1 147 13 HOH HOH . 
N 6 HOH B 2 148 17 HOH HOH . 
N 6 HOH B 3 149 22 HOH HOH . 
N 6 HOH B 4 150 25 HOH HOH . 
N 6 HOH B 5 151 27 HOH HOH . 
N 6 HOH B 6 152 30 HOH HOH . 
N 6 HOH B 7 153 33 HOH HOH . 
N 6 HOH B 8 154 40 HOH HOH . 
N 6 HOH B 9 155 43 HOH HOH . 
N 6 HOH B 10 156 52 HOH HOH . 
N 6 HOH B 11 157 59 HOH HOH . 
N 6 HOH B 12 158 60 HOH HOH . 
N 6 HOH B 13 159 72 HOH HOH . 
N 6 HOH B 14 160 75 HOH HOH . 
N 6 HOH B 15 161 81 HOH HOH . 
N 6 HOH B 16 162 82 HOH HOH . 
N 6 HOH B 17 163 83 HOH HOH . 
N 6 HOH B 18 164 84 HOH HOH . 
N 6 HOH B 19 165 85 HOH HOH . 
N 6 HOH B 20 166 89 HOH HOH . 
N 6 HOH B 21 167 93 HOH HOH . 
N 6 HOH B 22 168 101 HOH HOH . 
N 6 HOH B 23 169 104 HOH HOH . 
N 6 HOH B 24 170 116 HOH HOH . 
N 6 HOH B 25 171 127 HOH HOH . 
N 6 HOH B 26 172 128 HOH HOH . 
N 6 HOH B 27 173 129 HOH HOH . 
N 6 HOH B 28 174 131 HOH HOH . 
N 6 HOH B 29 175 132 HOH HOH . 
N 6 HOH B 30 176 136 HOH HOH . 
N 6 HOH B 31 177 141 HOH HOH . 
N 6 HOH B 32 178 142 HOH HOH . 
N 6 HOH B 33 179 146 HOH HOH . 
N 6 HOH B 34 180 147 HOH HOH . 
N 6 HOH B 35 181 148 HOH HOH . 
N 6 HOH B 36 182 150 HOH HOH . 
N 6 HOH B 37 183 153 HOH HOH . 
N 6 HOH B 38 184 156 HOH HOH . 
N 6 HOH B 39 185 157 HOH HOH . 
N 6 HOH B 40 186 160 HOH HOH . 
N 6 HOH B 41 187 161 HOH HOH . 
N 6 HOH B 42 188 177 HOH HOH . 
N 6 HOH B 43 189 178 HOH HOH . 
N 6 HOH B 44 190 179 HOH HOH . 
N 6 HOH B 45 191 180 HOH HOH . 
N 6 HOH B 46 192 181 HOH HOH . 
N 6 HOH B 47 193 183 HOH HOH . 
N 6 HOH B 48 194 184 HOH HOH . 
N 6 HOH B 49 195 185 HOH HOH . 
N 6 HOH B 50 196 186 HOH HOH . 
N 6 HOH B 51 197 187 HOH HOH . 
N 6 HOH B 52 198 189 HOH HOH . 
N 6 HOH B 53 199 197 HOH HOH . 
N 6 HOH B 54 200 198 HOH HOH . 
N 6 HOH B 55 201 199 HOH HOH . 
N 6 HOH B 56 202 200 HOH HOH . 
N 6 HOH B 57 203 201 HOH HOH . 
N 6 HOH B 58 204 202 HOH HOH . 
N 6 HOH B 59 205 203 HOH HOH . 
N 6 HOH B 60 206 204 HOH HOH . 
N 6 HOH B 61 207 205 HOH HOH . 
N 6 HOH B 62 208 215 HOH HOH . 
N 6 HOH B 63 209 229 HOH HOH . 
N 6 HOH B 64 210 230 HOH HOH . 
N 6 HOH B 65 211 231 HOH HOH . 
N 6 HOH B 66 212 232 HOH HOH . 
O 6 HOH C 1 108 21 HOH HOH . 
O 6 HOH C 2 109 31 HOH HOH . 
O 6 HOH C 3 110 35 HOH HOH . 
O 6 HOH C 4 111 45 HOH HOH . 
O 6 HOH C 5 112 48 HOH HOH . 
O 6 HOH C 6 113 50 HOH HOH . 
O 6 HOH C 7 114 51 HOH HOH . 
O 6 HOH C 8 115 54 HOH HOH . 
O 6 HOH C 9 116 58 HOH HOH . 
O 6 HOH C 10 117 66 HOH HOH . 
O 6 HOH C 11 118 67 HOH HOH . 
O 6 HOH C 12 119 78 HOH HOH . 
O 6 HOH C 13 120 79 HOH HOH . 
O 6 HOH C 14 121 86 HOH HOH . 
O 6 HOH C 15 122 103 HOH HOH . 
O 6 HOH C 16 123 117 HOH HOH . 
O 6 HOH C 17 124 118 HOH HOH . 
O 6 HOH C 18 125 137 HOH HOH . 
O 6 HOH C 19 126 140 HOH HOH . 
O 6 HOH C 20 127 145 HOH HOH . 
O 6 HOH C 21 128 151 HOH HOH . 
O 6 HOH C 22 129 154 HOH HOH . 
O 6 HOH C 23 130 159 HOH HOH . 
O 6 HOH C 24 131 172 HOH HOH . 
O 6 HOH C 25 132 206 HOH HOH . 
O 6 HOH C 26 133 207 HOH HOH . 
O 6 HOH C 27 134 209 HOH HOH . 
O 6 HOH C 28 135 210 HOH HOH . 
O 6 HOH C 29 136 223 HOH HOH . 
O 6 HOH C 30 137 224 HOH HOH . 
O 6 HOH C 31 138 225 HOH HOH . 
O 6 HOH C 32 139 226 HOH HOH . 
O 6 HOH C 33 140 228 HOH HOH . 
O 6 HOH C 34 141 235 HOH HOH . 
P 6 HOH D 1 108 18 HOH HOH . 
P 6 HOH D 2 109 23 HOH HOH . 
P 6 HOH D 3 110 24 HOH HOH . 
P 6 HOH D 4 111 26 HOH HOH . 
P 6 HOH D 5 112 29 HOH HOH . 
P 6 HOH D 6 113 32 HOH HOH . 
P 6 HOH D 7 114 36 HOH HOH . 
P 6 HOH D 8 115 37 HOH HOH . 
P 6 HOH D 9 116 41 HOH HOH . 
P 6 HOH D 10 117 44 HOH HOH . 
P 6 HOH D 11 118 46 HOH HOH . 
P 6 HOH D 12 119 49 HOH HOH . 
P 6 HOH D 13 120 55 HOH HOH . 
P 6 HOH D 14 121 57 HOH HOH . 
P 6 HOH D 15 122 62 HOH HOH . 
P 6 HOH D 16 123 63 HOH HOH . 
P 6 HOH D 17 124 65 HOH HOH . 
P 6 HOH D 18 125 69 HOH HOH . 
P 6 HOH D 19 126 70 HOH HOH . 
P 6 HOH D 20 127 71 HOH HOH . 
P 6 HOH D 21 128 76 HOH HOH . 
P 6 HOH D 22 129 87 HOH HOH . 
P 6 HOH D 23 130 90 HOH HOH . 
P 6 HOH D 24 131 92 HOH HOH . 
P 6 HOH D 25 132 94 HOH HOH . 
P 6 HOH D 26 133 97 HOH HOH . 
P 6 HOH D 27 134 100 HOH HOH . 
P 6 HOH D 28 135 105 HOH HOH . 
P 6 HOH D 29 136 106 HOH HOH . 
P 6 HOH D 30 137 107 HOH HOH . 
P 6 HOH D 31 138 108 HOH HOH . 
P 6 HOH D 32 139 109 HOH HOH . 
P 6 HOH D 33 140 110 HOH HOH . 
P 6 HOH D 34 141 111 HOH HOH . 
P 6 HOH D 35 142 112 HOH HOH . 
P 6 HOH D 36 143 124 HOH HOH . 
P 6 HOH D 37 144 125 HOH HOH . 
P 6 HOH D 38 145 126 HOH HOH . 
P 6 HOH D 39 146 130 HOH HOH . 
P 6 HOH D 40 147 135 HOH HOH . 
P 6 HOH D 41 148 138 HOH HOH . 
P 6 HOH D 42 149 149 HOH HOH . 
P 6 HOH D 43 150 152 HOH HOH . 
P 6 HOH D 44 151 155 HOH HOH . 
P 6 HOH D 45 152 188 HOH HOH . 
P 6 HOH D 46 153 212 HOH HOH . 
P 6 HOH D 47 154 213 HOH HOH . 
P 6 HOH D 48 155 214 HOH HOH . 
P 6 HOH D 49 156 216 HOH HOH . 
P 6 HOH D 50 157 217 HOH HOH . 
P 6 HOH D 51 158 218 HOH HOH . 
P 6 HOH D 52 159 219 HOH HOH . 
P 6 HOH D 53 160 220 HOH HOH . 
P 6 HOH D 54 161 221 HOH HOH . 
P 6 HOH D 55 162 222 HOH HOH . 
P 6 HOH D 56 163 238 HOH HOH . 
P 6 HOH D 57 164 239 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 Y Y1 YBT . . . I 3 -5.857 70.818 15.041 1 60.96 ? Y1 YBT 145 B 1 
HETATM 2 O O1 YBT . . . I 3 -7.448 69.276 14.338 1 64.02 ? O1 YBT 145 B 1 
HETATM 3 O O2 YBT . . . I 3 -8 71.829 15.101 1 69.98 ? O2 YBT 145 B 1 
HETATM 4 O O3 YBT . . . I 3 -10.238 70.314 11.665 1 82.03 ? O3 YBT 145 B 1 
HETATM 5 O O4 YBT . . . I 3 -5.125 72.837 14.148 1 68.79 ? O4 YBT 145 B 1 
HETATM 6 O O5 YBT . . . I 3 -4.664 69.864 13.292 1 59.33 ? O5 YBT 145 B 1 
HETATM 7 N N1 YBT . . . I 3 -6.867 71.485 12.439 1 62.45 ? N1 YBT 145 B 1 
HETATM 8 C C1 YBT . . . I 3 -8.233 71.022 12.812 1 68.92 ? C1 YBT 145 B 1 
HETATM 9 C C2 YBT . . . I 3 -8.205 69.515 13.157 1 66.94 ? C2 YBT 145 B 1 
HETATM 10 C C3 YBT . . . I 3 -8.853 71.807 13.975 1 63.53 ? C3 YBT 145 B 1 
HETATM 11 C C4 YBT . . . I 3 -9.138 71.208 11.59 1 76.89 ? C4 YBT 145 B 1 
HETATM 12 C C5 YBT . . . I 3 -6.632 72.936 12.209 1 64.08 ? C5 YBT 145 B 1 
HETATM 13 C C6 YBT . . . I 3 -6.083 73.639 13.492 1 65.24 ? C6 YBT 145 B 1 
HETATM 14 C C7 YBT . . . I 3 -6.129 70.552 11.559 1 64.61 ? C7 YBT 145 B 1 
HETATM 15 C C8 YBT . . . I 3 -4.688 70.496 12.043 1 64.44 ? C8 YBT 145 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    82 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          41 
_model_server_stats.element_count           15 
#