data_1R6U
#
_model_server_result.job_id            4hjjoM-Mc7xfUJpsBfd9Vg 
_model_server_result.datetime_utc      '2024-11-23 12:15:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1r6u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    1R6U 
#
_exptl.entry_id    1R6U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          129.9 
_cell.angle_gamma         90 
_cell.entry_id            1R6U 
_cell.length_a            134.658 
_cell.length_b            96.46 
_cell.length_c            97.132 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1R6U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 95 A ASP 142 1_555 A N MSE 96 A MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C MSE 96 A MSE 143 1_555 A N ASN 97 A ASN 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C ALA 121 A ALA 168 1_555 A N MSE 122 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C MSE 122 A MSE 169 1_555 A N HIS 123 A HIS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C GLN 147 A GLN 194 1_555 A N MSE 148 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 A C MSE 148 A MSE 195 1_555 A N THR 149 A THR 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 A C TYR 193 A TYR 240 1_555 A N MSE 194 A MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MSE 194 A MSE 241 1_555 A N GLY 195 A GLY 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C GLY 195 A GLY 242 1_555 A N MSE 196 A MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 A C MSE 196 A MSE 243 1_555 A N SER 197 A SER 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale11 A C ARG 271 A ARG 318 1_555 A N MSE 272 A MSE 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 A C MSE 272 A MSE 319 1_555 A N THR 273 A THR 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 A C LYS 302 A LYS 349 1_555 A N MSE 303 A MSE 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale14 A C MSE 303 A MSE 350 1_555 A N SER 304 A SER 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 A C PHE 353 A PHE 400 1_555 A N MSE 354 A MSE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale16 A C MSE 354 A MSE 401 1_555 A N TYR 355 A TYR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale17 A C ALA 377 A ALA 424 1_555 A N MSE 378 A MSE 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale18 A C MSE 378 A MSE 425 1_555 A N LEU 379 A LEU 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale19 A C PHE 413 A PHE 460 1_555 A N MSE 414 A MSE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 A C MSE 414 A MSE 461 1_555 A N THR 415 A THR 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale21 B C ASP 95 B ASP 142 1_555 B N MSE 96 B MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale22 B C MSE 96 B MSE 143 1_555 B N ASN 97 B ASN 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale23 B C ALA 121 B ALA 168 1_555 B N MSE 122 B MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale24 B C MSE 122 B MSE 169 1_555 B N HIS 123 B HIS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale25 B C GLN 147 B GLN 194 1_555 B N MSE 148 B MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale26 B C MSE 148 B MSE 195 1_555 B N THR 149 B THR 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale27 B C TYR 193 B TYR 240 1_555 B N MSE 194 B MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale28 B C MSE 194 B MSE 241 1_555 B N GLY 195 B GLY 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale29 B C GLY 195 B GLY 242 1_555 B N MSE 196 B MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale30 B C MSE 196 B MSE 243 1_555 B N SER 197 B SER 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale31 B C ARG 271 B ARG 318 1_555 B N MSE 272 B MSE 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale32 B C MSE 272 B MSE 319 1_555 B N THR 273 B THR 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale33 B C PHE 353 B PHE 400 1_555 B N MSE 354 B MSE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale34 B C MSE 354 B MSE 401 1_555 B N TYR 355 B TYR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale35 B C ALA 377 B ALA 424 1_555 B N MSE 378 B MSE 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale36 B C MSE 378 B MSE 425 1_555 B N LEU 379 B LEU 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale37 B C PHE 413 B PHE 460 1_555 B N MSE 414 B MSE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale38 B C MSE 414 B MSE 461 1_555 B N THR 415 B THR 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1R6U 
_atom_sites.fract_transf_matrix[1][1]    0.007426 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006209 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010367 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01342 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TYM A 1 501 501 TYM TYM . 
D 3 GOL A 1 601 601 GOL GOL . 
E 3 GOL A 1 602 602 GOL GOL . 
F 4 HOH A 1 1001 1001 HOH HOH . 
F 4 HOH A 2 1002 1002 HOH HOH . 
F 4 HOH A 3 1007 1007 HOH HOH . 
F 4 HOH A 4 1011 1011 HOH HOH . 
F 4 HOH A 5 1012 1012 HOH HOH . 
F 4 HOH A 6 1013 1013 HOH HOH . 
F 4 HOH A 7 1014 1014 HOH HOH . 
F 4 HOH A 8 1018 1018 HOH HOH . 
F 4 HOH A 9 1019 1019 HOH HOH . 
F 4 HOH A 10 1022 1022 HOH HOH . 
F 4 HOH A 11 1023 1023 HOH HOH . 
F 4 HOH A 12 1025 1025 HOH HOH . 
F 4 HOH A 13 1026 1026 HOH HOH . 
F 4 HOH A 14 1028 1028 HOH HOH . 
F 4 HOH A 15 1029 1029 HOH HOH . 
F 4 HOH A 16 1031 1031 HOH HOH . 
F 4 HOH A 17 1033 1033 HOH HOH . 
F 4 HOH A 18 1034 1034 HOH HOH . 
F 4 HOH A 19 1036 1036 HOH HOH . 
F 4 HOH A 20 1037 1037 HOH HOH . 
F 4 HOH A 21 1039 1039 HOH HOH . 
F 4 HOH A 22 1041 1041 HOH HOH . 
F 4 HOH A 23 1042 1042 HOH HOH . 
F 4 HOH A 24 1043 1043 HOH HOH . 
F 4 HOH A 25 1045 1045 HOH HOH . 
F 4 HOH A 26 1046 1046 HOH HOH . 
F 4 HOH A 27 1049 1049 HOH HOH . 
F 4 HOH A 28 1050 1050 HOH HOH . 
F 4 HOH A 29 1053 1053 HOH HOH . 
F 4 HOH A 30 1054 1054 HOH HOH . 
F 4 HOH A 31 1055 1055 HOH HOH . 
F 4 HOH A 32 1061 1061 HOH HOH . 
F 4 HOH A 33 1064 1064 HOH HOH . 
F 4 HOH A 34 1066 1066 HOH HOH . 
F 4 HOH A 35 1069 1069 HOH HOH . 
F 4 HOH A 36 1071 1071 HOH HOH . 
F 4 HOH A 37 1077 1077 HOH HOH . 
F 4 HOH A 38 1081 1081 HOH HOH . 
F 4 HOH A 39 1084 1084 HOH HOH . 
F 4 HOH A 40 1085 1085 HOH HOH . 
F 4 HOH A 41 1087 1087 HOH HOH . 
F 4 HOH A 42 1089 1089 HOH HOH . 
F 4 HOH A 43 1090 1090 HOH HOH . 
F 4 HOH A 44 1092 1092 HOH HOH . 
F 4 HOH A 45 1093 1093 HOH HOH . 
F 4 HOH A 46 1095 1095 HOH HOH . 
F 4 HOH A 47 1098 1098 HOH HOH . 
F 4 HOH A 48 1101 1101 HOH HOH . 
F 4 HOH A 49 1104 1104 HOH HOH . 
F 4 HOH A 50 1106 1106 HOH HOH . 
G 4 HOH B 1 1003 1003 HOH HOH . 
G 4 HOH B 2 1004 1004 HOH HOH . 
G 4 HOH B 3 1005 1005 HOH HOH . 
G 4 HOH B 4 1008 1008 HOH HOH . 
G 4 HOH B 5 1009 1009 HOH HOH . 
G 4 HOH B 6 1010 1010 HOH HOH . 
G 4 HOH B 7 1016 1016 HOH HOH . 
G 4 HOH B 8 1020 1020 HOH HOH . 
G 4 HOH B 9 1021 1021 HOH HOH . 
G 4 HOH B 10 1024 1024 HOH HOH . 
G 4 HOH B 11 1027 1027 HOH HOH . 
G 4 HOH B 12 1030 1030 HOH HOH . 
G 4 HOH B 13 1032 1032 HOH HOH . 
G 4 HOH B 14 1035 1035 HOH HOH . 
G 4 HOH B 15 1038 1038 HOH HOH . 
G 4 HOH B 16 1040 1040 HOH HOH . 
G 4 HOH B 17 1044 1044 HOH HOH . 
G 4 HOH B 18 1047 1047 HOH HOH . 
G 4 HOH B 19 1048 1048 HOH HOH . 
G 4 HOH B 20 1051 1051 HOH HOH . 
G 4 HOH B 21 1052 1052 HOH HOH . 
G 4 HOH B 22 1056 1056 HOH HOH . 
G 4 HOH B 23 1057 1057 HOH HOH . 
G 4 HOH B 24 1058 1058 HOH HOH . 
G 4 HOH B 25 1059 1059 HOH HOH . 
G 4 HOH B 26 1060 1060 HOH HOH . 
G 4 HOH B 27 1062 1062 HOH HOH . 
G 4 HOH B 28 1063 1063 HOH HOH . 
G 4 HOH B 29 1065 1065 HOH HOH . 
G 4 HOH B 30 1067 1067 HOH HOH . 
G 4 HOH B 31 1068 1068 HOH HOH . 
G 4 HOH B 32 1072 1072 HOH HOH . 
G 4 HOH B 33 1073 1073 HOH HOH . 
G 4 HOH B 34 1074 1074 HOH HOH . 
G 4 HOH B 35 1075 1075 HOH HOH . 
G 4 HOH B 36 1076 1076 HOH HOH . 
G 4 HOH B 37 1078 1078 HOH HOH . 
G 4 HOH B 38 1079 1079 HOH HOH . 
G 4 HOH B 39 1080 1080 HOH HOH . 
G 4 HOH B 40 1083 1083 HOH HOH . 
G 4 HOH B 41 1088 1088 HOH HOH . 
G 4 HOH B 42 1091 1091 HOH HOH . 
G 4 HOH B 43 1094 1094 HOH HOH . 
G 4 HOH B 44 1096 1096 HOH HOH . 
G 4 HOH B 45 1097 1097 HOH HOH . 
G 4 HOH B 46 1099 1099 HOH HOH . 
G 4 HOH B 47 1100 1100 HOH HOH . 
G 4 HOH B 48 1102 1102 HOH HOH . 
G 4 HOH B 49 1103 1103 HOH HOH . 
G 4 HOH B 50 1105 1105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 25.365 43.069 44.828 1 55.43 ? C1 GOL 601 A 1 
HETATM 2 O O1 GOL . . . D 3 25.304 44.399 45.351 1 54.56 ? O1 GOL 601 A 1 
HETATM 3 C C2 GOL . . . D 3 23.981 42.419 44.908 1 53.97 ? C2 GOL 601 A 1 
HETATM 4 O O2 GOL . . . D 3 22.827 43.229 44.787 1 54.68 ? O2 GOL 601 A 1 
HETATM 5 C C3 GOL . . . D 3 23.803 40.91 45.108 1 52.7 ? C3 GOL 601 A 1 
HETATM 6 O O3 GOL . . . D 3 22.465 40.574 45.445 1 54.01 ? O3 GOL 601 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#