data_1R78 # _model_server_result.job_id T2-lLWJeKtxFoLshfEYrPw _model_server_result.datetime_utc '2024-11-24 06:08:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 1R78 # _exptl.entry_id 1R78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.389 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-((3R,4S,5R)-4-AMINO-3,5-DIHYDROXY-HEX-1-YNYL)-5-FLUORO-3-[1-(3-METHOXY-1H-PYRROL-2-YL)-METH-(Z)-YLIDENE]-1,3-DIHYDRO-INDOL-2-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R78 _cell.length_a 53.88 _cell.length_b 71.962 _cell.length_c 72.779 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H20 F N3 O4' _chem_comp.formula_weight 385.389 _chem_comp.id FMD _chem_comp.mon_nstd_flag . _chem_comp.name 4-((3R,4S,5R)-4-AMINO-3,5-DIHYDROXY-HEX-1-YNYL)-5-FLUORO-3-[1-(3-METHOXY-1H-PYRROL-2-YL)-METH-(Z)-YLIDENE]-1,3-DIHYDRO-INDOL-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F17 C1 FMD sing 83 n n C1 C2 FMD doub 84 n y C1 C6 FMD sing 85 n y C2 C18 FMD sing 86 n n C2 C3 FMD sing 87 n y C18 C19 FMD trip 88 n n C19 C20 FMD sing 89 n n C20 O27 FMD sing 90 n n C20 C23 FMD sing 91 n n C20 H20 FMD sing 92 n n O27 H27 FMD sing 93 n n C23 N28 FMD sing 94 n n C23 C24 FMD sing 95 n n C23 H23 FMD sing 96 n n N28 H281 FMD sing 97 n n N28 H282 FMD sing 98 n n C24 O26 FMD sing 99 n n C24 C25 FMD sing 100 n n C24 H24 FMD sing 101 n n O26 H26 FMD sing 102 n n C25 H251 FMD sing 103 n n C25 H252 FMD sing 104 n n C25 H253 FMD sing 105 n n C3 C4 FMD doub 106 n y C3 C7 FMD sing 107 n n C4 N9 FMD sing 108 n n C4 C5 FMD sing 109 n y N9 C8 FMD sing 110 n n N9 HN9 FMD sing 111 n n C8 O10 FMD doub 112 n n C8 C7 FMD sing 113 n n C5 C6 FMD doub 114 n y C5 HC5 FMD sing 115 n n C6 HC6 FMD sing 116 n n C7 C11 FMD doub 117 z n C11 C12 FMD sing 118 n n C11 H11 FMD sing 119 n n C12 C13 FMD doub 120 n y C12 N16 FMD sing 121 n y C13 O21 FMD sing 122 n n C13 C14 FMD sing 123 n y O21 C22 FMD sing 124 n n C22 H221 FMD sing 125 n n C22 H222 FMD sing 126 n n C22 H223 FMD sing 127 n n C14 C15 FMD doub 128 n y C14 H14 FMD sing 129 n n C15 N16 FMD sing 130 n y C15 H15 FMD sing 131 n n N16 H16 FMD sing 132 n n # _atom_sites.entry_id 1R78 _atom_sites.fract_transf_matrix[1][1] 0.01856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMD A 1 299 1 FMD UNK . C 3 HOH A 1 300 1 HOH HOH . C 3 HOH A 2 301 2 HOH HOH . C 3 HOH A 3 302 3 HOH HOH . C 3 HOH A 4 303 4 HOH HOH . C 3 HOH A 5 304 5 HOH HOH . C 3 HOH A 6 305 6 HOH HOH . C 3 HOH A 7 306 7 HOH HOH . C 3 HOH A 8 307 8 HOH HOH . C 3 HOH A 9 308 9 HOH HOH . C 3 HOH A 10 309 10 HOH HOH . C 3 HOH A 11 310 11 HOH HOH . C 3 HOH A 12 311 12 HOH HOH . C 3 HOH A 13 312 13 HOH HOH . C 3 HOH A 14 313 14 HOH HOH . C 3 HOH A 15 314 15 HOH HOH . C 3 HOH A 16 315 16 HOH HOH . C 3 HOH A 17 316 17 HOH HOH . C 3 HOH A 18 317 18 HOH HOH . C 3 HOH A 19 318 19 HOH HOH . C 3 HOH A 20 319 20 HOH HOH . C 3 HOH A 21 320 21 HOH HOH . C 3 HOH A 22 321 22 HOH HOH . C 3 HOH A 23 322 23 HOH HOH . C 3 HOH A 24 323 24 HOH HOH . C 3 HOH A 25 324 25 HOH HOH . C 3 HOH A 26 325 26 HOH HOH . C 3 HOH A 27 326 27 HOH HOH . C 3 HOH A 28 327 28 HOH HOH . C 3 HOH A 29 328 29 HOH HOH . C 3 HOH A 30 329 30 HOH HOH . C 3 HOH A 31 330 31 HOH HOH . C 3 HOH A 32 331 32 HOH HOH . C 3 HOH A 33 332 33 HOH HOH . C 3 HOH A 34 333 34 HOH HOH . C 3 HOH A 35 334 35 HOH HOH . C 3 HOH A 36 335 36 HOH HOH . C 3 HOH A 37 336 37 HOH HOH . C 3 HOH A 38 337 38 HOH HOH . C 3 HOH A 39 338 39 HOH HOH . C 3 HOH A 40 339 40 HOH HOH . C 3 HOH A 41 340 41 HOH HOH . C 3 HOH A 42 341 42 HOH HOH . C 3 HOH A 43 342 43 HOH HOH . C 3 HOH A 44 343 44 HOH HOH . C 3 HOH A 45 344 45 HOH HOH . C 3 HOH A 46 345 46 HOH HOH . C 3 HOH A 47 346 47 HOH HOH . C 3 HOH A 48 347 48 HOH HOH . C 3 HOH A 49 348 49 HOH HOH . C 3 HOH A 50 349 50 HOH HOH . C 3 HOH A 51 350 51 HOH HOH . C 3 HOH A 52 351 52 HOH HOH . C 3 HOH A 53 352 53 HOH HOH . C 3 HOH A 54 353 54 HOH HOH . C 3 HOH A 55 354 55 HOH HOH . C 3 HOH A 56 355 56 HOH HOH . C 3 HOH A 57 356 57 HOH HOH . C 3 HOH A 58 357 58 HOH HOH . C 3 HOH A 59 358 59 HOH HOH . C 3 HOH A 60 359 60 HOH HOH . C 3 HOH A 61 360 61 HOH HOH . C 3 HOH A 62 361 62 HOH HOH . C 3 HOH A 63 362 63 HOH HOH . C 3 HOH A 64 363 64 HOH HOH . C 3 HOH A 65 364 65 HOH HOH . C 3 HOH A 66 365 66 HOH HOH . C 3 HOH A 67 366 67 HOH HOH . C 3 HOH A 68 367 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F17 FMD . . . B 2 16.82 -6.294 12.779 1 17.41 ? F17 FMD 299 A 1 HETATM 2 C C1 FMD . . . B 2 16.024 -7.208 13.363 1 16.53 ? C1 FMD 299 A 1 HETATM 3 C C2 FMD . . . B 2 14.877 -7.607 12.658 1 18.64 ? C2 FMD 299 A 1 HETATM 4 C C18 FMD . . . B 2 14.588 -7.039 11.402 1 20.78 ? C18 FMD 299 A 1 HETATM 5 C C19 FMD . . . B 2 14.326 -6.571 10.333 1 24.65 ? C19 FMD 299 A 1 HETATM 6 C C20 FMD . . . B 2 13.963 -6.027 9.086 1 28.74 ? C20 FMD 299 A 1 HETATM 7 O O27 FMD . . . B 2 14.161 -4.611 9.14 1 28.82 ? O27 FMD 299 A 1 HETATM 8 C C23 FMD . . . B 2 14.603 -6.731 7.862 1 30.26 ? C23 FMD 299 A 1 HETATM 9 N N28 FMD . . . B 2 15.006 -8.116 8.14 1 30.38 ? N28 FMD 299 A 1 HETATM 10 C C24 FMD . . . B 2 13.526 -6.726 6.761 1 31.94 ? C24 FMD 299 A 1 HETATM 11 O O26 FMD . . . B 2 14.086 -6.757 5.441 1 35.31 ? O26 FMD 299 A 1 HETATM 12 C C25 FMD . . . B 2 12.55 -5.532 6.867 1 30.78 ? C25 FMD 299 A 1 HETATM 13 C C3 FMD . . . B 2 14.035 -8.616 13.321 1 16.06 ? C3 FMD 299 A 1 HETATM 14 C C4 FMD . . . B 2 14.416 -9.125 14.601 1 15.33 ? C4 FMD 299 A 1 HETATM 15 N N9 FMD . . . B 2 13.44 -10.033 14.962 1 14.85 ? N9 FMD 299 A 1 HETATM 16 C C8 FMD . . . B 2 12.43 -10.203 13.999 1 14.88 ? C8 FMD 299 A 1 HETATM 17 O O10 FMD . . . B 2 11.492 -10.964 14.129 1 15.9 ? O10 FMD 299 A 1 HETATM 18 C C5 FMD . . . B 2 15.558 -8.685 15.255 1 15.96 ? C5 FMD 299 A 1 HETATM 19 C C6 FMD . . . B 2 16.366 -7.72 14.623 1 15.96 ? C6 FMD 299 A 1 HETATM 20 C C7 FMD . . . B 2 12.887 -9.235 12.944 1 15.94 ? C7 FMD 299 A 1 HETATM 21 C C11 FMD . . . B 2 12.151 -9.008 11.689 1 14.72 ? C11 FMD 299 A 1 HETATM 22 C C12 FMD . . . B 2 10.89 -9.521 11.157 1 15.6 ? C12 FMD 299 A 1 HETATM 23 C C13 FMD . . . B 2 10.257 -9.222 9.966 1 15.31 ? C13 FMD 299 A 1 HETATM 24 O O21 FMD . . . B 2 10.702 -8.329 9.01 1 17.97 ? O21 FMD 299 A 1 HETATM 25 C C22 FMD . . . B 2 10.25 -8.469 7.653 1 19.11 ? C22 FMD 299 A 1 HETATM 26 C C14 FMD . . . B 2 9.036 -10.021 9.977 1 15.48 ? C14 FMD 299 A 1 HETATM 27 C C15 FMD . . . B 2 9.023 -10.745 11.126 1 15.73 ? C15 FMD 299 A 1 HETATM 28 N N16 FMD . . . B 2 10.141 -10.458 11.84 1 14.88 ? N16 FMD 299 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #