data_1R81 # _model_server_result.job_id Vx1AhU2oDwPjL1Pdn2M5jQ _model_server_result.datetime_utc '2024-11-30 14:37:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1R81 # _exptl.entry_id 1R81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R81 _cell.length_a 52.6 _cell.length_b 149.4 _cell.length_c 79.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 52.6 0 39.85 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 AIG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B AIG 1 B 1 AIG B 452 AIG 2 n B FUC 2 B 2 FUC B 453 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O2 AIG . B AIG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? metalc ? metalc1 A SG CYS 18 A CYS 80 1_555 F HG HG . A HG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc2 A O GLY 36 A GLY 98 1_555 F HG HG . A HG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc3 A OG1 THR 57 A THR 119 1_555 E HG HG . A HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc4 A SG CYS 147 A CYS 209 1_555 E HG HG . A HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 A SG CYS 222 A CYS 284 1_555 C HG HG . A HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 A SG CYS 222 A CYS 284 1_555 D HG HG . A HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc7 A SD MET 226 A MET 288 1_555 C HG HG . A HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc8 A OD1 ASP 240 A ASP 302 1_555 C HG HG . A HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc9 F HG HG . A HG 404 1_555 H O HOH . A HOH 554 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.414 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1R81 _atom_sites.fract_transf_matrix[1][1] 0.019011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HG A 1 401 401 HG HG . D 3 HG A 1 402 402 HG HG . E 3 HG A 1 403 403 HG HG . F 3 HG A 1 404 404 HG HG . G 4 UD2 A 1 475 475 UD2 UD2 . H 5 HOH A 1 476 1 HOH TIP . H 5 HOH A 2 477 2 HOH TIP . H 5 HOH A 3 478 3 HOH TIP . H 5 HOH A 4 479 4 HOH TIP . H 5 HOH A 5 480 5 HOH TIP . H 5 HOH A 6 481 6 HOH TIP . H 5 HOH A 7 482 7 HOH TIP . H 5 HOH A 8 483 8 HOH TIP . H 5 HOH A 9 484 9 HOH TIP . H 5 HOH A 10 485 10 HOH TIP . H 5 HOH A 11 486 11 HOH TIP . H 5 HOH A 12 487 12 HOH TIP . H 5 HOH A 13 488 13 HOH TIP . H 5 HOH A 14 489 14 HOH TIP . H 5 HOH A 15 490 15 HOH TIP . H 5 HOH A 16 491 16 HOH TIP . H 5 HOH A 17 492 17 HOH TIP . H 5 HOH A 18 493 18 HOH TIP . H 5 HOH A 19 494 19 HOH TIP . H 5 HOH A 20 495 20 HOH TIP . H 5 HOH A 21 496 21 HOH TIP . H 5 HOH A 22 497 22 HOH TIP . H 5 HOH A 23 498 23 HOH TIP . H 5 HOH A 24 499 24 HOH TIP . H 5 HOH A 25 500 25 HOH TIP . H 5 HOH A 26 501 26 HOH TIP . H 5 HOH A 27 502 27 HOH TIP . H 5 HOH A 28 503 28 HOH TIP . H 5 HOH A 29 504 29 HOH TIP . H 5 HOH A 30 505 31 HOH TIP . H 5 HOH A 31 506 32 HOH TIP . H 5 HOH A 32 507 33 HOH TIP . H 5 HOH A 33 508 34 HOH TIP . H 5 HOH A 34 509 35 HOH TIP . H 5 HOH A 35 510 36 HOH TIP . H 5 HOH A 36 511 37 HOH TIP . H 5 HOH A 37 512 38 HOH TIP . H 5 HOH A 38 513 39 HOH TIP . H 5 HOH A 39 514 40 HOH TIP . H 5 HOH A 40 515 41 HOH TIP . H 5 HOH A 41 516 42 HOH TIP . H 5 HOH A 42 517 43 HOH TIP . H 5 HOH A 43 518 44 HOH TIP . H 5 HOH A 44 519 45 HOH TIP . H 5 HOH A 45 520 46 HOH TIP . H 5 HOH A 46 521 47 HOH TIP . H 5 HOH A 47 522 48 HOH TIP . H 5 HOH A 48 523 49 HOH TIP . H 5 HOH A 49 524 50 HOH TIP . H 5 HOH A 50 525 51 HOH TIP . H 5 HOH A 51 526 53 HOH TIP . H 5 HOH A 52 527 54 HOH TIP . H 5 HOH A 53 528 55 HOH TIP . H 5 HOH A 54 529 56 HOH TIP . H 5 HOH A 55 530 57 HOH TIP . H 5 HOH A 56 531 58 HOH TIP . H 5 HOH A 57 532 59 HOH TIP . H 5 HOH A 58 533 60 HOH TIP . H 5 HOH A 59 534 61 HOH TIP . H 5 HOH A 60 535 62 HOH TIP . H 5 HOH A 61 536 63 HOH TIP . H 5 HOH A 62 537 64 HOH TIP . H 5 HOH A 63 538 65 HOH TIP . H 5 HOH A 64 539 66 HOH TIP . H 5 HOH A 65 540 67 HOH TIP . H 5 HOH A 66 541 68 HOH TIP . H 5 HOH A 67 542 69 HOH TIP . H 5 HOH A 68 543 70 HOH TIP . H 5 HOH A 69 544 72 HOH TIP . H 5 HOH A 70 545 73 HOH TIP . H 5 HOH A 71 546 74 HOH TIP . H 5 HOH A 72 547 75 HOH TIP . H 5 HOH A 73 548 76 HOH TIP . H 5 HOH A 74 549 77 HOH TIP . H 5 HOH A 75 550 78 HOH TIP . H 5 HOH A 76 551 79 HOH TIP . H 5 HOH A 77 552 80 HOH TIP . H 5 HOH A 78 553 81 HOH TIP . H 5 HOH A 79 554 82 HOH TIP . H 5 HOH A 80 555 83 HOH TIP . H 5 HOH A 81 556 84 HOH TIP . H 5 HOH A 82 557 85 HOH TIP . H 5 HOH A 83 558 86 HOH TIP . H 5 HOH A 84 559 87 HOH TIP . H 5 HOH A 85 560 89 HOH TIP . H 5 HOH A 86 561 90 HOH TIP . H 5 HOH A 87 562 91 HOH TIP . H 5 HOH A 88 563 92 HOH TIP . H 5 HOH A 89 564 93 HOH TIP . H 5 HOH A 90 565 94 HOH TIP . H 5 HOH A 91 566 95 HOH TIP . H 5 HOH A 92 567 96 HOH TIP . H 5 HOH A 93 568 97 HOH TIP . H 5 HOH A 94 569 98 HOH TIP . H 5 HOH A 95 570 99 HOH TIP . H 5 HOH A 96 571 100 HOH TIP . H 5 HOH A 97 572 101 HOH TIP . H 5 HOH A 98 573 102 HOH TIP . H 5 HOH A 99 574 103 HOH TIP . H 5 HOH A 100 575 104 HOH TIP . H 5 HOH A 101 576 105 HOH TIP . H 5 HOH A 102 577 106 HOH TIP . H 5 HOH A 103 578 107 HOH TIP . H 5 HOH A 104 579 109 HOH TIP . H 5 HOH A 105 580 115 HOH TIP . H 5 HOH A 106 581 117 HOH TIP . H 5 HOH A 107 582 120 HOH TIP . H 5 HOH A 108 583 123 HOH TIP . H 5 HOH A 109 584 124 HOH TIP . H 5 HOH A 110 585 125 HOH TIP . H 5 HOH A 111 586 128 HOH TIP . H 5 HOH A 112 587 129 HOH TIP . H 5 HOH A 113 588 130 HOH TIP . H 5 HOH A 114 589 131 HOH TIP . H 5 HOH A 115 590 132 HOH TIP . H 5 HOH A 116 591 133 HOH TIP . H 5 HOH A 117 592 134 HOH TIP . H 5 HOH A 118 593 135 HOH TIP . H 5 HOH A 119 594 136 HOH TIP . H 5 HOH A 120 595 137 HOH TIP . H 5 HOH A 121 596 138 HOH TIP . H 5 HOH A 122 597 139 HOH TIP . H 5 HOH A 123 598 140 HOH TIP . H 5 HOH A 124 599 141 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.183 _atom_site.Cartn_y 46.581 _atom_site.Cartn_z 44.956 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 50.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #