data_1R84 # _model_server_result.job_id SmJjBLMHDstiihtL1mjZ5w _model_server_result.datetime_utc '2025-07-31 04:22:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 1R84 # _exptl.entry_id 1R84 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 999 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.346 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 243 n n C1 C6 RET sing 244 n n C1 C16 RET sing 245 n n C1 C17 RET sing 246 n n C2 C3 RET sing 247 n n C2 H21 RET sing 248 n n C2 H22 RET sing 249 n n C3 C4 RET sing 250 n n C3 H31 RET sing 251 n n C3 H32 RET sing 252 n n C4 C5 RET sing 253 n n C4 H41 RET sing 254 n n C4 H42 RET sing 255 n n C5 C6 RET doub 256 n n C5 C18 RET sing 257 n n C6 C7 RET sing 258 n n C7 C8 RET doub 259 e n C7 H7 RET sing 260 n n C8 C9 RET sing 261 n n C8 H8 RET sing 262 n n C9 C10 RET doub 263 e n C9 C19 RET sing 264 n n C10 C11 RET sing 265 n n C10 H10 RET sing 266 n n C11 C12 RET doub 267 e n C11 H11 RET sing 268 n n C12 C13 RET sing 269 n n C12 H12 RET sing 270 n n C13 C14 RET doub 271 e n C13 C20 RET sing 272 n n C14 C15 RET sing 273 n n C14 H14 RET sing 274 n n C15 O1 RET doub 275 n n C15 H15 RET sing 276 n n C16 H161 RET sing 277 n n C16 H162 RET sing 278 n n C16 H163 RET sing 279 n n C17 H171 RET sing 280 n n C17 H172 RET sing 281 n n C17 H173 RET sing 282 n n C18 H181 RET sing 283 n n C18 H182 RET sing 284 n n C18 H183 RET sing 285 n n C19 H191 RET sing 286 n n C19 H192 RET sing 287 n n C19 H193 RET sing 288 n n C20 H201 RET sing 289 n n C20 H202 RET sing 290 n n C20 H203 RET sing 291 n n # _atom_sites.entry_id 1R84 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 999 999 RET RET . C 3 HOH A 1 233 233 HOH WAT . C 3 HOH A 2 234 234 HOH WAT . C 3 HOH A 3 235 235 HOH WAT . C 3 HOH A 4 236 236 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -6.114 -7.505 1.825 1 10 ? C1 RET 999 A 1 HETATM 2 C C2 RET . . . B 2 -6.761 -8.785 2.425 1 10 ? C2 RET 999 A 1 HETATM 3 C C3 RET . . . B 2 -7.927 -9.29 1.582 1 10 ? C3 RET 999 A 1 HETATM 4 C C4 RET . . . B 2 -9 -8.22 1.669 1 10 ? C4 RET 999 A 1 HETATM 5 C C5 RET . . . B 2 -8.532 -6.805 1.363 1 10 ? C5 RET 999 A 1 HETATM 6 C C6 RET . . . B 2 -7.15 -6.456 1.347 1 10 ? C6 RET 999 A 1 HETATM 7 C C7 RET . . . B 2 -6.792 -5.157 0.869 1 10 ? C7 RET 999 A 1 HETATM 8 C C8 RET . . . B 2 -5.486 -4.634 0.726 1 10 ? C8 RET 999 A 1 HETATM 9 C C9 RET . . . B 2 -5.164 -3.342 0.253 1 10 ? C9 RET 999 A 1 HETATM 10 C C10 RET . . . B 2 -3.79 -3.032 0.166 1 10 ? C10 RET 999 A 1 HETATM 11 C C11 RET . . . B 2 -3.242 -1.849 -0.362 1 10 ? C11 RET 999 A 1 HETATM 12 C C12 RET . . . B 2 -1.84 -1.717 -0.371 1 10 ? C12 RET 999 A 1 HETATM 13 C C13 RET . . . B 2 -1.147 -0.568 -0.797 1 10 ? C13 RET 999 A 1 HETATM 14 C C14 RET . . . B 2 0.255 -0.496 -0.745 1 10 ? C14 RET 999 A 1 HETATM 15 C C15 RET . . . B 2 1.057 -1.648 -0.793 1 10 ? C15 RET 999 A 1 HETATM 16 C C16 RET . . . B 2 -5.248 -7.015 3.004 1 10 ? C16 RET 999 A 1 HETATM 17 C C17 RET . . . B 2 -5.205 -7.999 0.68 1 10 ? C17 RET 999 A 1 HETATM 18 C C18 RET . . . B 2 -9.627 -5.763 1.216 1 10 ? C18 RET 999 A 1 HETATM 19 C C19 RET . . . B 2 -6.23 -2.349 -0.186 1 10 ? C19 RET 999 A 1 HETATM 20 C C20 RET . . . B 2 -1.9 0.657 -1.244 1 10 ? C20 RET 999 A 1 HETATM 21 H H21 RET . . . B 2 -7.143 -8.574 3.426 1 10 ? H21 RET 999 A 1 HETATM 22 H H22 RET . . . B 2 -6.024 -9.582 2.529 1 10 ? H22 RET 999 A 1 HETATM 23 H H31 RET . . . B 2 -7.626 -9.442 0.547 1 10 ? H31 RET 999 A 1 HETATM 24 H H32 RET . . . B 2 -8.304 -10.227 1.995 1 10 ? H32 RET 999 A 1 HETATM 25 H H41 RET . . . B 2 -9.394 -8.23 2.681 1 10 ? H41 RET 999 A 1 HETATM 26 H H42 RET . . . B 2 -9.811 -8.492 0.997 1 10 ? H42 RET 999 A 1 HETATM 27 H H7 RET . . . B 2 -7.587 -4.51 0.544 1 10 ? H7 RET 999 A 1 HETATM 28 H H8 RET . . . B 2 -4.637 -5.247 0.951 1 10 ? H8 RET 999 A 1 HETATM 29 H H10 RET . . . B 2 -3.089 -3.785 0.503 1 10 ? H10 RET 999 A 1 HETATM 30 H H11 RET . . . B 2 -3.875 -1.067 -0.756 1 10 ? H11 RET 999 A 1 HETATM 31 H H12 RET . . . B 2 -1.287 -2.542 0.046 1 10 ? H12 RET 999 A 1 HETATM 32 H H14 RET . . . B 2 0.732 0.471 -0.795 1 10 ? H14 RET 999 A 1 HETATM 33 H H15 RET . . . B 2 0.585 -2.59 -1.024 1 10 ? H15 RET 999 A 1 HETATM 34 H H161 RET . . . B 2 -4.584 -6.209 2.726 1 10 ? H161 RET 999 A 1 HETATM 35 H H162 RET . . . B 2 -5.891 -6.661 3.811 1 10 ? H162 RET 999 A 1 HETATM 36 H H163 RET . . . B 2 -4.62 -7.821 3.374 1 10 ? H163 RET 999 A 1 HETATM 37 H H171 RET . . . B 2 -4.505 -7.234 0.369 1 10 ? H171 RET 999 A 1 HETATM 38 H H172 RET . . . B 2 -4.617 -8.86 0.994 1 10 ? H172 RET 999 A 1 HETATM 39 H H173 RET . . . B 2 -5.808 -8.285 -0.18 1 10 ? H173 RET 999 A 1 HETATM 40 H H181 RET . . . B 2 -10.596 -6.216 1.412 1 10 ? H181 RET 999 A 1 HETATM 41 H H182 RET . . . B 2 -9.466 -4.961 1.936 1 10 ? H182 RET 999 A 1 HETATM 42 H H183 RET . . . B 2 -9.633 -5.36 0.205 1 10 ? H183 RET 999 A 1 HETATM 43 H H191 RET . . . B 2 -6.474 -2.522 -1.234 1 10 ? H191 RET 999 A 1 HETATM 44 H H192 RET . . . B 2 -7.127 -2.451 0.415 1 10 ? H192 RET 999 A 1 HETATM 45 H H193 RET . . . B 2 -5.887 -1.326 -0.052 1 10 ? H193 RET 999 A 1 HETATM 46 H H201 RET . . . B 2 -2.579 0.38 -2.047 1 10 ? H201 RET 999 A 1 HETATM 47 H H202 RET . . . B 2 -2.451 1.07 -0.405 1 10 ? H202 RET 999 A 1 HETATM 48 H H203 RET . . . B 2 -1.2 1.398 -1.623 1 10 ? H203 RET 999 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 3025 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #