data_1R8M # _model_server_result.job_id JJT-V3Tg0CQ8yzYcPd_ymg _model_server_result.datetime_utc '2024-11-16 01:19:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":254}' # _entry.id 1R8M # _exptl.entry_id 1R8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.67 _cell.angle_gamma 90 _cell.entry_id 1R8M _cell.length_a 33.429 _cell.length_b 95.775 _cell.length_c 33.665 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 124 E LEU 173 1_555 A N CME 125 E CME 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale2 A C CME 125 E CME 174 1_555 A N ASN 126 E ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? metalc ? metalc1 A NE2 HIS 78 E HIS 127 1_554 B MN MN . E MN 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A OD2 ASP 82 E ASP 131 1_554 B MN MN . E MN 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc3 A O ASN 191 E ASN 240 1_555 B MN MN . E MN 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 B MN MN . E MN 253 1_555 D O HOH . E HOH 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 B MN MN . E MN 253 1_555 D O HOH . E HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc6 B MN MN . E MN 253 1_555 D O HOH . E HOH 365 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 104 n n C O2 FMT sing 105 n n C H FMT sing 106 n n O2 HO2 FMT sing 107 n n # _atom_sites.entry_id 1R8M _atom_sites.fract_transf_matrix[1][1] 0.029914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006179 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN E 1 253 201 MN MN . C 3 FMT E 1 254 202 FMT FMT . D 4 HOH E 1 255 1 HOH HOH . D 4 HOH E 2 256 2 HOH HOH . D 4 HOH E 3 257 3 HOH HOH . D 4 HOH E 4 258 4 HOH HOH . D 4 HOH E 5 259 5 HOH HOH . D 4 HOH E 6 260 6 HOH HOH . D 4 HOH E 7 261 7 HOH HOH . D 4 HOH E 8 262 8 HOH HOH . D 4 HOH E 9 263 9 HOH HOH . D 4 HOH E 10 264 10 HOH HOH . D 4 HOH E 11 265 11 HOH HOH . D 4 HOH E 12 266 12 HOH HOH . D 4 HOH E 13 267 13 HOH HOH . D 4 HOH E 14 268 14 HOH HOH . D 4 HOH E 15 269 15 HOH HOH . D 4 HOH E 16 270 16 HOH HOH . D 4 HOH E 17 271 17 HOH HOH . D 4 HOH E 18 272 18 HOH HOH . D 4 HOH E 19 273 19 HOH HOH . D 4 HOH E 20 274 20 HOH HOH . D 4 HOH E 21 275 21 HOH HOH . D 4 HOH E 22 276 22 HOH HOH . D 4 HOH E 23 277 23 HOH HOH . D 4 HOH E 24 278 24 HOH HOH . D 4 HOH E 25 279 25 HOH HOH . D 4 HOH E 26 280 26 HOH HOH . D 4 HOH E 27 281 27 HOH HOH . D 4 HOH E 28 282 28 HOH HOH . D 4 HOH E 29 283 29 HOH HOH . D 4 HOH E 30 284 30 HOH HOH . D 4 HOH E 31 285 31 HOH HOH . D 4 HOH E 32 286 32 HOH HOH . D 4 HOH E 33 287 33 HOH HOH . D 4 HOH E 34 288 34 HOH HOH . D 4 HOH E 35 289 35 HOH HOH . D 4 HOH E 36 290 36 HOH HOH . D 4 HOH E 37 291 37 HOH HOH . D 4 HOH E 38 292 38 HOH HOH . D 4 HOH E 39 293 39 HOH HOH . D 4 HOH E 40 294 40 HOH HOH . D 4 HOH E 41 295 41 HOH HOH . D 4 HOH E 42 296 42 HOH HOH . D 4 HOH E 43 297 43 HOH HOH . D 4 HOH E 44 298 44 HOH HOH . D 4 HOH E 45 299 45 HOH HOH . D 4 HOH E 46 300 46 HOH HOH . D 4 HOH E 47 301 47 HOH HOH . D 4 HOH E 48 302 48 HOH HOH . D 4 HOH E 49 303 49 HOH HOH . D 4 HOH E 50 304 50 HOH HOH . D 4 HOH E 51 305 51 HOH HOH . D 4 HOH E 52 306 52 HOH HOH . D 4 HOH E 53 307 53 HOH HOH . D 4 HOH E 54 308 54 HOH HOH . D 4 HOH E 55 309 55 HOH HOH . D 4 HOH E 56 310 56 HOH HOH . D 4 HOH E 57 311 57 HOH HOH . D 4 HOH E 58 312 58 HOH HOH . D 4 HOH E 59 313 59 HOH HOH . D 4 HOH E 60 314 60 HOH HOH . D 4 HOH E 61 315 61 HOH HOH . D 4 HOH E 62 316 62 HOH HOH . D 4 HOH E 63 317 63 HOH HOH . D 4 HOH E 64 318 64 HOH HOH . D 4 HOH E 65 319 65 HOH HOH . D 4 HOH E 66 320 66 HOH HOH . D 4 HOH E 67 321 67 HOH HOH . D 4 HOH E 68 322 68 HOH HOH . D 4 HOH E 69 323 69 HOH HOH . D 4 HOH E 70 324 70 HOH HOH . D 4 HOH E 71 325 71 HOH HOH . D 4 HOH E 72 326 72 HOH HOH . D 4 HOH E 73 327 73 HOH HOH . D 4 HOH E 74 328 74 HOH HOH . D 4 HOH E 75 329 75 HOH HOH . D 4 HOH E 76 330 76 HOH HOH . D 4 HOH E 77 331 77 HOH HOH . D 4 HOH E 78 332 78 HOH HOH . D 4 HOH E 79 333 79 HOH HOH . D 4 HOH E 80 334 80 HOH HOH . D 4 HOH E 81 335 81 HOH HOH . D 4 HOH E 82 336 82 HOH HOH . D 4 HOH E 83 337 83 HOH HOH . D 4 HOH E 84 338 84 HOH HOH . D 4 HOH E 85 339 85 HOH HOH . D 4 HOH E 86 340 86 HOH HOH . D 4 HOH E 87 341 87 HOH HOH . D 4 HOH E 88 342 88 HOH HOH . D 4 HOH E 89 343 89 HOH HOH . D 4 HOH E 90 344 90 HOH HOH . D 4 HOH E 91 345 91 HOH HOH . D 4 HOH E 92 346 92 HOH HOH . D 4 HOH E 93 347 93 HOH HOH . D 4 HOH E 94 348 94 HOH HOH . D 4 HOH E 95 349 95 HOH HOH . D 4 HOH E 96 350 96 HOH HOH . D 4 HOH E 97 351 97 HOH HOH . D 4 HOH E 98 352 98 HOH HOH . D 4 HOH E 99 353 99 HOH HOH . D 4 HOH E 100 354 100 HOH HOH . D 4 HOH E 101 355 101 HOH HOH . D 4 HOH E 102 356 102 HOH HOH . D 4 HOH E 103 357 103 HOH HOH . D 4 HOH E 104 358 104 HOH HOH . D 4 HOH E 105 359 105 HOH HOH . D 4 HOH E 106 360 106 HOH HOH . D 4 HOH E 107 361 107 HOH HOH . D 4 HOH E 108 362 108 HOH HOH . D 4 HOH E 109 363 109 HOH HOH . D 4 HOH E 110 364 110 HOH HOH . D 4 HOH E 111 365 111 HOH HOH . D 4 HOH E 112 366 112 HOH HOH . D 4 HOH E 113 367 113 HOH HOH . D 4 HOH E 114 368 114 HOH HOH . D 4 HOH E 115 369 115 HOH HOH . D 4 HOH E 116 370 116 HOH HOH . D 4 HOH E 117 371 117 HOH HOH . D 4 HOH E 118 372 118 HOH HOH . D 4 HOH E 119 373 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . C 3 -0.225 3.073 3.712 0.5 14.78 ? C FMT 254 E 1 HETATM 2 O O1 FMT . . . C 3 0.734 2.278 3.824 0.5 17.25 ? O1 FMT 254 E 1 HETATM 3 O O2 FMT . . . C 3 0.03 4.135 3.195 0.5 10.78 ? O2 FMT 254 E 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #