data_1R8X # _model_server_result.job_id YogFzX9w00OsEbt3s9OGRQ _model_server_result.datetime_utc '2024-11-04 20:34:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1r8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1247}' # _entry.id 1R8X # _exptl.entry_id 1R8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1R8X _cell.length_a 70.7 _cell.length_b 70.7 _cell.length_c 266.03 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_556 -y,-x,-z+3/2 0 -1 0 -1 0 0 0 0 -1 0 0 399.045 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 146 A CYS 146 1_555 C S2 BME . A BME 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale2 A SG CYS 246 A CYS 246 1_555 D S2 BME . A BME 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? covale ? covale3 B SG CYS 146 B CYS 146 1_555 F S2 BME . B BME 2146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? covale ? covale4 B SG CYS 262 B CYS 262 1_555 G S2 BME . B BME 2262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 343 n n C C2 TRS sing 344 n n C C3 TRS sing 345 n n C N TRS sing 346 n n C1 O1 TRS sing 347 n n C1 H11 TRS sing 348 n n C1 H12 TRS sing 349 n n C2 O2 TRS sing 350 n n C2 H21 TRS sing 351 n n C2 H22 TRS sing 352 n n C3 O3 TRS sing 353 n n C3 H31 TRS sing 354 n n C3 H32 TRS sing 355 n n N HN1 TRS sing 356 n n N HN2 TRS sing 357 n n N HN3 TRS sing 358 n n O1 HO1 TRS sing 359 n n O2 HO2 TRS sing 360 n n O3 HO3 TRS sing 361 n n # _atom_sites.entry_id 1R8X _atom_sites.fract_transf_matrix[1][1] 0.014144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BME A 1 1146 1146 BME BME . D 2 BME A 1 1246 1246 BME BME . E 3 TRS A 1 1247 1 TRS TRS . F 2 BME B 1 2146 2146 BME BME . G 2 BME B 1 2262 2262 BME BME . H 3 TRS B 1 2263 2 TRS TRS . I 4 HOH A 1 1248 105 HOH HOH . I 4 HOH A 2 1249 107 HOH HOH . I 4 HOH A 3 1250 110 HOH HOH . I 4 HOH A 4 1251 111 HOH HOH . I 4 HOH A 5 1252 114 HOH HOH . I 4 HOH A 6 1253 115 HOH HOH . I 4 HOH A 7 1254 119 HOH HOH . I 4 HOH A 8 1255 120 HOH HOH . I 4 HOH A 9 1256 121 HOH HOH . J 4 HOH B 1 2264 101 HOH HOH . J 4 HOH B 2 2265 102 HOH HOH . J 4 HOH B 3 2266 103 HOH HOH . J 4 HOH B 4 2267 104 HOH HOH . J 4 HOH B 5 2268 106 HOH HOH . J 4 HOH B 6 2269 108 HOH HOH . J 4 HOH B 7 2270 109 HOH HOH . J 4 HOH B 8 2271 112 HOH HOH . J 4 HOH B 9 2272 113 HOH HOH . J 4 HOH B 10 2273 116 HOH HOH . J 4 HOH B 11 2274 117 HOH HOH . J 4 HOH B 12 2275 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . E 3 21.862 18.737 186.251 0.5 35.47 ? C TRS 1247 A 1 HETATM 2 C C1 TRS . . . E 3 21.792 17.581 187.256 0.5 35.1 ? C1 TRS 1247 A 1 HETATM 3 C C2 TRS . . . E 3 22.465 19.997 186.917 0.5 35.63 ? C2 TRS 1247 A 1 HETATM 4 C C3 TRS . . . E 3 20.556 18.961 185.463 0.5 36.09 ? C3 TRS 1247 A 1 HETATM 5 N N TRS . . . E 3 22.8 18.307 185.209 0.5 35.33 ? N TRS 1247 A 1 HETATM 6 O O1 TRS . . . E 3 21.805 18.002 188.601 0.5 33.43 ? O1 TRS 1247 A 1 HETATM 7 O O2 TRS . . . E 3 21.937 21.261 186.524 0.5 36.7 ? O2 TRS 1247 A 1 HETATM 8 O O3 TRS . . . E 3 19.333 18.613 186.081 0.5 35.65 ? O3 TRS 1247 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #