data_1R8Y
#
_model_server_result.job_id            BDWqK07z-npfvLdgg74o9Q 
_model_server_result.datetime_utc      '2024-11-05 00:41:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1r8y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":7282}' 
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_entry.id    1R8Y 
#
_exptl.entry_id    1R8Y 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.71 
_cell.angle_gamma         90 
_cell.entry_id            1R8Y 
_cell.length_a            107.98 
_cell.length_b            108.3 
_cell.length_c            119.01 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1R8Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA octameric 8 software_defined_assembly 3 
PISA octameric 8 software_defined_assembly 4 
PISA octameric 8 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,S,T 1 1 
E,F,G,H,O,P,Q,R,U,V,W 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 3 1 
A,B,C,D,I,J,K,L,M,N,S,T 4 1 
E,F,G,H,O,P,Q,R,U,V,W 4 2 
A,B,C,D,I,J,K,L,M,N,S,T 5 1 
E,F,G,H,O,P,Q,R,U,V,W 5 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 100.279282 54.15 118.760596 
3 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -7.700718 0 118.760596 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 262 A CYS 262 1_555 I S2 BME . A BME 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
covale ? covale2 A SG CYS 282 A CYS 282 1_555 J S2 BME . A BME 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
covale ? covale3 B SG CYS 57 B CYS 57 1_555 K S2 BME . B BME 2057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
covale ? covale4 D SG CYS 185 D CYS 185 1_555 L S2 BME . D BME 4185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
covale ? covale5 D SG CYS 246 D CYS 246 1_555 M S2 BME . D BME 4246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
covale ? covale6 D SG CYS 262 D CYS 262 1_555 N S2 BME . D BME 4262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
covale ? covale7 E SG CYS 246 E CYS 246 1_555 O S2 BME . E BME 5246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale8 F SG CYS 282 F CYS 282 1_555 P S2 BME . F BME 6282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
covale ? covale9 G SG CYS 246 G CYS 246 1_555 Q S2 BME . G BME 7246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
covale ? covale10 G SG CYS 282 G CYS 282 1_555 R S2 BME . G BME 7282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BME sing 70 n n 
C1 O1 BME sing 71 n n 
C1 H11 BME sing 72 n n 
C1 H12 BME sing 73 n n 
C2 S2 BME sing 74 n n 
C2 H21 BME sing 75 n n 
C2 H22 BME sing 76 n n 
O1 HO1 BME sing 77 n n 
S2 HS2 BME sing 78 n n 
#
_atom_sites.entry_id                     1R8Y 
_atom_sites.fract_transf_matrix[1][1]    0.009261 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000601 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009234 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00842 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 BME A 1 1262 1262 BME BME . 
J 2 BME A 1 1282 1282 BME BME . 
K 2 BME B 1 2057 2057 BME BME . 
L 2 BME D 1 4185 4185 BME BME . 
M 2 BME D 1 4246 4246 BME BME . 
N 2 BME D 1 4262 4262 BME BME . 
O 2 BME E 1 5246 5246 BME BME . 
P 2 BME F 1 6282 6282 BME BME . 
Q 2 BME G 1 7246 7246 BME BME . 
R 2 BME G 1 7282 7282 BME BME . 
S 3 HOH C 1 293 5 HOH HOH . 
S 3 HOH C 2 294 6 HOH HOH . 
S 3 HOH C 3 295 8 HOH HOH . 
S 3 HOH C 4 296 12 HOH HOH . 
T 3 HOH D 1 4263 1 HOH HOH . 
T 3 HOH D 2 4264 2 HOH HOH . 
T 3 HOH D 3 4265 10 HOH HOH . 
U 3 HOH E 1 5247 11 HOH HOH . 
U 3 HOH E 2 5248 13 HOH HOH . 
V 3 HOH F 1 6283 3 HOH HOH . 
V 3 HOH F 2 6284 9 HOH HOH . 
V 3 HOH F 3 6285 14 HOH HOH . 
W 3 HOH G 1 7283 4 HOH HOH . 
W 3 HOH G 2 7284 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . R 2 93.502 108.736 -30.232 1 26.04 ? C1 BME 7282 G 1 
HETATM 2 C C2 BME . . . R 2 94.447 109.557 -31.136 1 26.34 ? C2 BME 7282 G 1 
HETATM 3 O O1 BME . . . R 2 92.636 109.504 -29.405 1 24.65 ? O1 BME 7282 G 1 
HETATM 4 S S2 BME . . . R 2 95.72 110.485 -30.228 1 27.22 ? S2 BME 7282 G 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#