data_1RA2 # _model_server_result.job_id wcYN53sOo8vV7ohNTLD9bw _model_server_result.datetime_utc '2024-12-03 18:00:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ra2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":164}' # _entry.id 1RA2 # _exptl.entry_id 1RA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.63 _cell.angle_gamma 90 _cell.entry_id 1RA2 _cell.length_a 74.261 _cell.length_b 59.91 _cell.length_c 38.957 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 290 n n PA O2A NAP sing 291 n n PA O5B NAP sing 292 n n PA O3 NAP sing 293 n n O2A HOA2 NAP sing 294 n n O5B C5B NAP sing 295 n n C5B C4B NAP sing 296 n n C5B H51A NAP sing 297 n n C5B H52A NAP sing 298 n n C4B O4B NAP sing 299 n n C4B C3B NAP sing 300 n n C4B H4B NAP sing 301 n n O4B C1B NAP sing 302 n n C3B O3B NAP sing 303 n n C3B C2B NAP sing 304 n n C3B H3B NAP sing 305 n n O3B HO3A NAP sing 306 n n C2B O2B NAP sing 307 n n C2B C1B NAP sing 308 n n C2B H2B NAP sing 309 n n O2B P2B NAP sing 310 n n C1B N9A NAP sing 311 n n C1B H1B NAP sing 312 n n N9A C8A NAP sing 313 n y N9A C4A NAP sing 314 n y C8A N7A NAP doub 315 n y C8A H8A NAP sing 316 n n N7A C5A NAP sing 317 n y C5A C6A NAP sing 318 n y C5A C4A NAP doub 319 n y C6A N6A NAP sing 320 n n C6A N1A NAP doub 321 n y N6A H61A NAP sing 322 n n N6A H62A NAP sing 323 n n N1A C2A NAP sing 324 n y C2A N3A NAP doub 325 n y C2A H2A NAP sing 326 n n N3A C4A NAP sing 327 n y O3 PN NAP sing 328 n n PN O1N NAP doub 329 n n PN O2N NAP sing 330 n n PN O5D NAP sing 331 n n O5D C5D NAP sing 332 n n C5D C4D NAP sing 333 n n C5D H51N NAP sing 334 n n C5D H52N NAP sing 335 n n C4D O4D NAP sing 336 n n C4D C3D NAP sing 337 n n C4D H4D NAP sing 338 n n O4D C1D NAP sing 339 n n C3D O3D NAP sing 340 n n C3D C2D NAP sing 341 n n C3D H3D NAP sing 342 n n O3D HO3N NAP sing 343 n n C2D O2D NAP sing 344 n n C2D C1D NAP sing 345 n n C2D H2D NAP sing 346 n n O2D HO2N NAP sing 347 n n C1D N1N NAP sing 348 n n C1D H1D NAP sing 349 n n N1N C2N NAP sing 350 n y N1N C6N NAP doub 351 n y C2N C3N NAP doub 352 n y C2N H2N NAP sing 353 n n C3N C7N NAP sing 354 n n C3N C4N NAP sing 355 n y C7N O7N NAP doub 356 n n C7N N7N NAP sing 357 n n N7N H71N NAP sing 358 n n N7N H72N NAP sing 359 n n C4N C5N NAP doub 360 n y C4N H4N NAP sing 361 n n C5N C6N NAP sing 362 n y C5N H5N NAP sing 363 n n C6N H6N NAP sing 364 n n P2B O1X NAP doub 365 n n P2B O2X NAP sing 366 n n P2B O3X NAP sing 367 n n O2X HOP2 NAP sing 368 n n O3X HOP3 NAP sing 369 n n # _atom_sites.entry_id 1RA2 _atom_sites.fract_transf_matrix[1][1] 0.013466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004279 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 161 161 FOL FOL . C 3 NAP A 1 164 164 NAP NAP . D 4 HOH A 1 302 302 HOH HOH . D 4 HOH A 2 305 305 HOH HOH . D 4 HOH A 3 307 307 HOH HOH . D 4 HOH A 4 309 309 HOH HOH . D 4 HOH A 5 310 310 HOH HOH . D 4 HOH A 6 311 311 HOH HOH . D 4 HOH A 7 312 312 HOH HOH . D 4 HOH A 8 314 314 HOH HOH . D 4 HOH A 9 316 316 HOH HOH . D 4 HOH A 10 318 318 HOH HOH . D 4 HOH A 11 320 320 HOH HOH . D 4 HOH A 12 321 321 HOH HOH . D 4 HOH A 13 323 323 HOH HOH . D 4 HOH A 14 327 327 HOH HOH . D 4 HOH A 15 328 328 HOH HOH . D 4 HOH A 16 335 335 HOH HOH . D 4 HOH A 17 337 337 HOH HOH . D 4 HOH A 18 338 338 HOH HOH . D 4 HOH A 19 340 340 HOH HOH . D 4 HOH A 20 348 348 HOH HOH . D 4 HOH A 21 349 349 HOH HOH . D 4 HOH A 22 353 353 HOH HOH . D 4 HOH A 23 354 354 HOH HOH . D 4 HOH A 24 357 357 HOH HOH . D 4 HOH A 25 358 358 HOH HOH . D 4 HOH A 26 359 359 HOH HOH . D 4 HOH A 27 362 362 HOH HOH . D 4 HOH A 28 363 363 HOH HOH . D 4 HOH A 29 365 365 HOH HOH . D 4 HOH A 30 369 369 HOH HOH . D 4 HOH A 31 370 370 HOH HOH . D 4 HOH A 32 375 375 HOH HOH . D 4 HOH A 33 379 379 HOH HOH . D 4 HOH A 34 385 385 HOH HOH . D 4 HOH A 35 406 406 HOH HOH . D 4 HOH A 36 407 407 HOH HOH . D 4 HOH A 37 408 408 HOH HOH . D 4 HOH A 38 411 411 HOH HOH . D 4 HOH A 39 423 423 HOH HOH . D 4 HOH A 40 425 425 HOH HOH . D 4 HOH A 41 428 428 HOH HOH . D 4 HOH A 42 449 449 HOH HOH . D 4 HOH A 43 456 456 HOH HOH . D 4 HOH A 44 461 461 HOH HOH . D 4 HOH A 45 479 479 HOH HOH . D 4 HOH A 46 499 499 HOH HOH . D 4 HOH A 47 509 509 HOH HOH . D 4 HOH A 48 600 600 HOH HOH . D 4 HOH A 49 601 601 HOH HOH . D 4 HOH A 50 602 602 HOH HOH . D 4 HOH A 51 604 604 HOH HOH . D 4 HOH A 52 605 605 HOH HOH . D 4 HOH A 53 606 606 HOH HOH . D 4 HOH A 54 607 607 HOH HOH . D 4 HOH A 55 608 608 HOH HOH . D 4 HOH A 56 609 609 HOH HOH . D 4 HOH A 57 610 610 HOH HOH . D 4 HOH A 58 611 611 HOH HOH . D 4 HOH A 59 613 613 HOH HOH . D 4 HOH A 60 614 614 HOH HOH . D 4 HOH A 61 615 615 HOH HOH . D 4 HOH A 62 616 616 HOH HOH . D 4 HOH A 63 617 617 HOH HOH . D 4 HOH A 64 618 618 HOH HOH . D 4 HOH A 65 619 619 HOH HOH . D 4 HOH A 66 620 620 HOH HOH . D 4 HOH A 67 621 621 HOH HOH . D 4 HOH A 68 622 622 HOH HOH . D 4 HOH A 69 623 623 HOH HOH . D 4 HOH A 70 624 624 HOH HOH . D 4 HOH A 71 625 625 HOH HOH . D 4 HOH A 72 626 626 HOH HOH . D 4 HOH A 73 627 627 HOH HOH . D 4 HOH A 74 628 628 HOH HOH . D 4 HOH A 75 629 629 HOH HOH . D 4 HOH A 76 633 633 HOH HOH . D 4 HOH A 77 636 636 HOH HOH . D 4 HOH A 78 637 637 HOH HOH . D 4 HOH A 79 640 640 HOH HOH . D 4 HOH A 80 641 641 HOH HOH . D 4 HOH A 81 642 642 HOH HOH . D 4 HOH A 82 643 643 HOH HOH . D 4 HOH A 83 646 646 HOH HOH . D 4 HOH A 84 647 647 HOH HOH . D 4 HOH A 85 648 648 HOH HOH . D 4 HOH A 86 649 649 HOH HOH . D 4 HOH A 87 650 650 HOH HOH . D 4 HOH A 88 651 651 HOH HOH . D 4 HOH A 89 652 652 HOH HOH . D 4 HOH A 90 653 653 HOH HOH . D 4 HOH A 91 655 655 HOH HOH . D 4 HOH A 92 656 656 HOH HOH . D 4 HOH A 93 658 658 HOH HOH . D 4 HOH A 94 659 659 HOH HOH . D 4 HOH A 95 660 660 HOH HOH . D 4 HOH A 96 661 661 HOH HOH . D 4 HOH A 97 662 662 HOH HOH . D 4 HOH A 98 664 664 HOH HOH . D 4 HOH A 99 665 665 HOH HOH . D 4 HOH A 100 666 666 HOH HOH . D 4 HOH A 101 667 667 HOH HOH . D 4 HOH A 102 668 668 HOH HOH . D 4 HOH A 103 670 670 HOH HOH . D 4 HOH A 104 671 671 HOH HOH . D 4 HOH A 105 672 672 HOH HOH . D 4 HOH A 106 673 673 HOH HOH . D 4 HOH A 107 674 674 HOH HOH . D 4 HOH A 108 675 675 HOH HOH . D 4 HOH A 109 676 676 HOH HOH . D 4 HOH A 110 677 677 HOH HOH . D 4 HOH A 111 678 678 HOH HOH . D 4 HOH A 112 679 679 HOH HOH . D 4 HOH A 113 682 682 HOH HOH . D 4 HOH A 114 683 683 HOH HOH . D 4 HOH A 115 684 684 HOH HOH . D 4 HOH A 116 685 685 HOH HOH . D 4 HOH A 117 686 686 HOH HOH . D 4 HOH A 118 687 687 HOH HOH . D 4 HOH A 119 688 688 HOH HOH . D 4 HOH A 120 689 689 HOH HOH . D 4 HOH A 121 690 690 HOH HOH . D 4 HOH A 122 691 691 HOH HOH . D 4 HOH A 123 693 693 HOH HOH . D 4 HOH A 124 695 695 HOH HOH . D 4 HOH A 125 696 696 HOH HOH . D 4 HOH A 126 697 697 HOH HOH . D 4 HOH A 127 699 699 HOH HOH . D 4 HOH A 128 700 700 HOH HOH . D 4 HOH A 129 701 701 HOH HOH . D 4 HOH A 130 702 702 HOH HOH . D 4 HOH A 131 703 703 HOH HOH . D 4 HOH A 132 705 705 HOH HOH . D 4 HOH A 133 706 706 HOH HOH . D 4 HOH A 134 707 707 HOH HOH . D 4 HOH A 135 708 708 HOH HOH . D 4 HOH A 136 709 709 HOH HOH . D 4 HOH A 137 710 710 HOH HOH . D 4 HOH A 138 711 711 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 17.775 20.049 2.401 1 14.64 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . C 3 18.403 19.01 3.283 1 14.4 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . C 3 16.424 20.545 2.565 1 11.76 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . C 3 17.903 19.283 0.958 1 16.08 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . C 3 17.483 19.969 -0.237 1 12.23 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . C 3 17.41 18.868 -1.319 1 10.57 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . C 3 16.296 17.947 -1.141 1 15.16 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . C 3 17.046 19.473 -2.668 1 13.52 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . C 3 18.173 20.092 -3.215 1 16.48 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . C 3 16.504 18.283 -3.473 1 9.87 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . C 3 17.527 17.363 -3.675 1 16.45 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . C 3 15.639 17.646 -2.362 1 15.7 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . C 3 14.284 18.1 -2.321 1 14.47 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . C 3 13.701 18.99 -1.476 1 20.1 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . C 3 12.437 19.129 -1.699 1 17.74 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . C 3 12.189 18.24 -2.746 1 14.66 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . C 3 11.024 17.918 -3.465 1 26.48 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . C 3 9.794 18.458 -3.226 1 23.21 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . C 3 11.176 17.031 -4.459 1 27.72 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . C 3 12.387 16.499 -4.705 1 28.34 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . C 3 13.532 16.733 -4.094 1 15.74 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . C 3 13.342 17.629 -3.133 1 15.03 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . C 3 18.746 21.259 2.093 1 13.59 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . C 3 18.885 22.712 2.67 1 19.63 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . C 3 20.145 23.244 2.107 1 20.66 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . C 3 17.662 23.564 2.58 1 21.38 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . C 3 19.099 22.377 4.198 1 18.44 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . C 3 20.275 21.454 4.401 1 27.79 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . C 3 21.137 22.235 5.489 1 41.98 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . C 3 20.376 22.399 6.746 1 39.22 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . C 3 22.572 21.972 6.1 1 42.6 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . C 3 23.348 23.041 6.495 1 38.5 ? O3D NAP 164 A 1 HETATM 33 C C2D NAP . . . C 3 22.248 21.042 7.321 1 40.16 ? C2D NAP 164 A 1 HETATM 34 O O2D NAP . . . C 3 23.223 20.755 8.246 1 40.11 ? O2D NAP 164 A 1 HETATM 35 C C1D NAP . . . C 3 21.118 21.773 7.86 1 39.18 ? C1D NAP 164 A 1 HETATM 36 N N1N NAP . . . C 3 20.124 21.16 8.878 1 34.46 ? N1N NAP 164 A 1 HETATM 37 C C2N NAP . . . C 3 19.956 21.526 10.219 1 36.16 ? C2N NAP 164 A 1 HETATM 38 C C3N NAP . . . C 3 19.105 21.057 11.118 1 29.6 ? C3N NAP 164 A 1 HETATM 39 C C7N NAP . . . C 3 19.136 21.627 12.444 1 26.69 ? C7N NAP 164 A 1 HETATM 40 O O7N NAP . . . C 3 18.04 21.288 12.993 1 23.61 ? O7N NAP 164 A 1 HETATM 41 N N7N NAP . . . C 3 20.04 22.481 13.032 1 24.5 ? N7N NAP 164 A 1 HETATM 42 C C4N NAP . . . C 3 18.112 19.928 10.62 1 28.3 ? C4N NAP 164 A 1 HETATM 43 C C5N NAP . . . C 3 18.382 19.596 9.158 1 33.33 ? C5N NAP 164 A 1 HETATM 44 C C6N NAP . . . C 3 19.286 20.174 8.431 1 32.02 ? C6N NAP 164 A 1 HETATM 45 P P2B NAP . . . C 3 18.295 17.382 -5.214 1 18.98 ? P2B NAP 164 A 1 HETATM 46 O O1X NAP . . . C 3 19.046 16.076 -5.177 1 17.82 ? O1X NAP 164 A 1 HETATM 47 O O2X NAP . . . C 3 19.143 18.617 -5.129 1 15.93 ? O2X NAP 164 A 1 HETATM 48 O O3X NAP . . . C 3 17.126 17.537 -6.175 1 18.39 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #