data_1RA3 # _model_server_result.job_id tsUbqNMxJD0e-lE5LDdzig _model_server_result.datetime_utc '2024-11-04 20:37:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ra3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":161}' # _entry.id 1RA3 # _exptl.entry_id 1RA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.91 _cell.angle_gamma 90 _cell.entry_id 1RA3 _cell.length_a 74.86 _cell.length_b 60.21 _cell.length_c 38.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 152 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 152 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 162 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.935 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RA3 _atom_sites.fract_transf_matrix[1][1] 0.013358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 161 161 MTX MTX . C 3 BME A 1 162 162 BME BME . D 4 NAP A 1 164 164 NAP NAP . E 5 HOH A 1 302 302 HOH HOH . E 5 HOH A 2 303 303 HOH HOH . E 5 HOH A 3 304 304 HOH HOH . E 5 HOH A 4 305 305 HOH HOH . E 5 HOH A 5 307 307 HOH HOH . E 5 HOH A 6 308 308 HOH HOH . E 5 HOH A 7 309 309 HOH HOH . E 5 HOH A 8 310 310 HOH HOH . E 5 HOH A 9 311 311 HOH HOH . E 5 HOH A 10 312 312 HOH HOH . E 5 HOH A 11 314 314 HOH HOH . E 5 HOH A 12 316 316 HOH HOH . E 5 HOH A 13 317 317 HOH HOH . E 5 HOH A 14 318 318 HOH HOH . E 5 HOH A 15 319 319 HOH HOH . E 5 HOH A 16 321 321 HOH HOH . E 5 HOH A 17 323 323 HOH HOH . E 5 HOH A 18 325 325 HOH HOH . E 5 HOH A 19 327 327 HOH HOH . E 5 HOH A 20 328 328 HOH HOH . E 5 HOH A 21 330 330 HOH HOH . E 5 HOH A 22 332 332 HOH HOH . E 5 HOH A 23 335 335 HOH HOH . E 5 HOH A 24 336 336 HOH HOH . E 5 HOH A 25 337 337 HOH HOH . E 5 HOH A 26 338 338 HOH HOH . E 5 HOH A 27 340 340 HOH HOH . E 5 HOH A 28 341 341 HOH HOH . E 5 HOH A 29 342 342 HOH HOH . E 5 HOH A 30 343 343 HOH HOH . E 5 HOH A 31 344 344 HOH HOH . E 5 HOH A 32 348 348 HOH HOH . E 5 HOH A 33 349 349 HOH HOH . E 5 HOH A 34 350 350 HOH HOH . E 5 HOH A 35 353 353 HOH HOH . E 5 HOH A 36 354 354 HOH HOH . E 5 HOH A 37 355 355 HOH HOH . E 5 HOH A 38 356 356 HOH HOH . E 5 HOH A 39 357 357 HOH HOH . E 5 HOH A 40 358 358 HOH HOH . E 5 HOH A 41 359 359 HOH HOH . E 5 HOH A 42 360 360 HOH HOH . E 5 HOH A 43 361 361 HOH HOH . E 5 HOH A 44 362 362 HOH HOH . E 5 HOH A 45 363 363 HOH HOH . E 5 HOH A 46 364 364 HOH HOH . E 5 HOH A 47 365 365 HOH HOH . E 5 HOH A 48 368 368 HOH HOH . E 5 HOH A 49 370 370 HOH HOH . E 5 HOH A 50 371 371 HOH HOH . E 5 HOH A 51 372 372 HOH HOH . E 5 HOH A 52 373 373 HOH HOH . E 5 HOH A 53 374 374 HOH HOH . E 5 HOH A 54 375 375 HOH HOH . E 5 HOH A 55 376 376 HOH HOH . E 5 HOH A 56 377 377 HOH HOH . E 5 HOH A 57 379 379 HOH HOH . E 5 HOH A 58 380 380 HOH HOH . E 5 HOH A 59 381 381 HOH HOH . E 5 HOH A 60 382 382 HOH HOH . E 5 HOH A 61 383 383 HOH HOH . E 5 HOH A 62 384 384 HOH HOH . E 5 HOH A 63 385 385 HOH HOH . E 5 HOH A 64 406 406 HOH HOH . E 5 HOH A 65 407 407 HOH HOH . E 5 HOH A 66 408 408 HOH HOH . E 5 HOH A 67 409 409 HOH HOH . E 5 HOH A 68 411 411 HOH HOH . E 5 HOH A 69 414 414 HOH HOH . E 5 HOH A 70 416 416 HOH HOH . E 5 HOH A 71 418 418 HOH HOH . E 5 HOH A 72 419 419 HOH HOH . E 5 HOH A 73 420 420 HOH HOH . E 5 HOH A 74 421 421 HOH HOH . E 5 HOH A 75 423 423 HOH HOH . E 5 HOH A 76 424 424 HOH HOH . E 5 HOH A 77 425 425 HOH HOH . E 5 HOH A 78 427 427 HOH HOH . E 5 HOH A 79 428 428 HOH HOH . E 5 HOH A 80 430 430 HOH HOH . E 5 HOH A 81 431 431 HOH HOH . E 5 HOH A 82 432 432 HOH HOH . E 5 HOH A 83 434 434 HOH HOH . E 5 HOH A 84 435 435 HOH HOH . E 5 HOH A 85 437 437 HOH HOH . E 5 HOH A 86 438 438 HOH HOH . E 5 HOH A 87 441 441 HOH HOH . E 5 HOH A 88 442 442 HOH HOH . E 5 HOH A 89 444 444 HOH HOH . E 5 HOH A 90 445 445 HOH HOH . E 5 HOH A 91 446 446 HOH HOH . E 5 HOH A 92 447 447 HOH HOH . E 5 HOH A 93 449 449 HOH HOH . E 5 HOH A 94 454 454 HOH HOH . E 5 HOH A 95 455 455 HOH HOH . E 5 HOH A 96 456 456 HOH HOH . E 5 HOH A 97 458 458 HOH HOH . E 5 HOH A 98 459 459 HOH HOH . E 5 HOH A 99 460 460 HOH HOH . E 5 HOH A 100 461 461 HOH HOH . E 5 HOH A 101 462 462 HOH HOH . E 5 HOH A 102 463 463 HOH HOH . E 5 HOH A 103 465 465 HOH HOH . E 5 HOH A 104 467 467 HOH HOH . E 5 HOH A 105 468 468 HOH HOH . E 5 HOH A 106 469 469 HOH HOH . E 5 HOH A 107 470 470 HOH HOH . E 5 HOH A 108 472 472 HOH HOH . E 5 HOH A 109 473 473 HOH HOH . E 5 HOH A 110 474 474 HOH HOH . E 5 HOH A 111 478 478 HOH HOH . E 5 HOH A 112 479 479 HOH HOH . E 5 HOH A 113 480 480 HOH HOH . E 5 HOH A 114 481 481 HOH HOH . E 5 HOH A 115 482 482 HOH HOH . E 5 HOH A 116 484 484 HOH HOH . E 5 HOH A 117 485 485 HOH HOH . E 5 HOH A 118 486 486 HOH HOH . E 5 HOH A 119 488 488 HOH HOH . E 5 HOH A 120 489 489 HOH HOH . E 5 HOH A 121 490 490 HOH HOH . E 5 HOH A 122 491 491 HOH HOH . E 5 HOH A 123 492 492 HOH HOH . E 5 HOH A 124 493 493 HOH HOH . E 5 HOH A 125 494 494 HOH HOH . E 5 HOH A 126 495 495 HOH HOH . E 5 HOH A 127 496 496 HOH HOH . E 5 HOH A 128 497 497 HOH HOH . E 5 HOH A 129 498 498 HOH HOH . E 5 HOH A 130 499 499 HOH HOH . E 5 HOH A 131 502 502 HOH HOH . E 5 HOH A 132 503 503 HOH HOH . E 5 HOH A 133 504 504 HOH HOH . E 5 HOH A 134 505 505 HOH HOH . E 5 HOH A 135 506 506 HOH HOH . E 5 HOH A 136 508 508 HOH HOH . E 5 HOH A 137 509 509 HOH HOH . E 5 HOH A 138 510 510 HOH HOH . E 5 HOH A 139 511 511 HOH HOH . E 5 HOH A 140 512 512 HOH HOH . E 5 HOH A 141 513 513 HOH HOH . E 5 HOH A 142 514 514 HOH HOH . E 5 HOH A 143 515 515 HOH HOH . E 5 HOH A 144 516 516 HOH HOH . E 5 HOH A 145 517 517 HOH HOH . E 5 HOH A 146 518 518 HOH HOH . E 5 HOH A 147 521 521 HOH HOH . E 5 HOH A 148 522 522 HOH HOH . E 5 HOH A 149 523 523 HOH HOH . E 5 HOH A 150 524 524 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . B 2 19.237 18.276 16.185 1 16.21 ? N1 MTX 161 A 1 HETATM 2 C C2 MTX . . . B 2 17.924 18.411 16.258 1 18.97 ? C2 MTX 161 A 1 HETATM 3 N NA2 MTX . . . B 2 17.318 18.723 17.348 1 14.29 ? NA2 MTX 161 A 1 HETATM 4 N N3 MTX . . . B 2 17.097 18.188 15.159 1 14.41 ? N3 MTX 161 A 1 HETATM 5 C C4 MTX . . . B 2 17.598 17.816 13.925 1 18.76 ? C4 MTX 161 A 1 HETATM 6 N NA4 MTX . . . B 2 16.789 17.617 12.943 1 14.47 ? NA4 MTX 161 A 1 HETATM 7 C C4A MTX . . . B 2 19.06 17.672 13.877 1 19.81 ? C4A MTX 161 A 1 HETATM 8 N N5 MTX . . . B 2 19.628 17.187 12.718 1 16.98 ? N5 MTX 161 A 1 HETATM 9 C C6 MTX . . . B 2 20.936 16.973 12.679 1 17.14 ? C6 MTX 161 A 1 HETATM 10 C C7 MTX . . . B 2 21.687 17.251 13.852 1 15.51 ? C7 MTX 161 A 1 HETATM 11 N N8 MTX . . . B 2 21.152 17.711 15.014 1 22.36 ? N8 MTX 161 A 1 HETATM 12 C C8A MTX . . . B 2 19.812 17.9 14.97 1 17.62 ? C8A MTX 161 A 1 HETATM 13 C C9 MTX . . . B 2 21.438 16.464 11.326 1 14.53 ? C9 MTX 161 A 1 HETATM 14 N N10 MTX . . . B 2 22.799 15.93 11.524 1 20.64 ? N10 MTX 161 A 1 HETATM 15 C CM MTX . . . B 2 23.953 16.709 11.047 1 26.29 ? CM MTX 161 A 1 HETATM 16 C C11 MTX . . . B 2 23.569 12.512 13.811 1 19.87 ? C11 MTX 161 A 1 HETATM 17 C C12 MTX . . . B 2 24.615 13.286 13.268 1 20.46 ? C12 MTX 161 A 1 HETATM 18 C C13 MTX . . . B 2 24.338 14.411 12.505 1 17.9 ? C13 MTX 161 A 1 HETATM 19 C C14 MTX . . . B 2 22.98 14.787 12.288 1 12.96 ? C14 MTX 161 A 1 HETATM 20 C C15 MTX . . . B 2 21.92 14.092 12.796 1 16.12 ? C15 MTX 161 A 1 HETATM 21 C C16 MTX . . . B 2 22.267 12.935 13.574 1 13 ? C16 MTX 161 A 1 HETATM 22 C C MTX . . . B 2 23.749 11.302 14.644 1 26.41 ? C MTX 161 A 1 HETATM 23 O O MTX . . . B 2 24.775 10.666 14.776 1 27.71 ? O MTX 161 A 1 HETATM 24 N N MTX . . . B 2 22.78 10.963 15.411 1 29.54 ? N MTX 161 A 1 HETATM 25 C CA MTX . . . B 2 22.722 9.685 16.152 1 27.7 ? CA MTX 161 A 1 HETATM 26 C CT MTX . . . B 2 21.349 9.095 16.187 1 27.2 ? CT MTX 161 A 1 HETATM 27 O O1 MTX . . . B 2 20.289 9.756 15.966 1 23.44 ? O1 MTX 161 A 1 HETATM 28 O O2 MTX . . . B 2 21.378 7.874 16.456 1 29.31 ? O2 MTX 161 A 1 HETATM 29 C CB MTX . . . B 2 23.024 10.03 17.603 1 29.08 ? CB MTX 161 A 1 HETATM 30 C CG MTX . . . B 2 24.568 9.881 17.72 1 38.75 ? CG MTX 161 A 1 HETATM 31 C CD MTX . . . B 2 24.97 10.561 19.014 1 56.75 ? CD MTX 161 A 1 HETATM 32 O OE1 MTX . . . B 2 24.002 10.462 19.875 1 53.53 ? OE1 MTX 161 A 1 HETATM 33 O OE2 MTX . . . B 2 26.08 11.175 19.115 1 69.02 ? OE2 MTX 161 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #