data_1RA9 # _model_server_result.job_id hfKoUATDa0blYoh76zSGpg _model_server_result.datetime_utc '2024-11-09 02:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ra9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":164}' # _entry.id 1RA9 # _exptl.entry_id 1RA9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.49 _cell.angle_gamma 90 _cell.entry_id 1RA9 _cell.length_a 74.86 _cell.length_b 59.566 _cell.length_c 38.914 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RA9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1RA9 _atom_sites.fract_transf_matrix[1][1] 0.013358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003954 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 164 164 NAP NAP . C 3 HOH A 1 700 700 HOH HOH . C 3 HOH A 2 701 701 HOH HOH . C 3 HOH A 3 702 702 HOH HOH . C 3 HOH A 4 703 703 HOH HOH . C 3 HOH A 5 704 704 HOH HOH . C 3 HOH A 6 705 705 HOH HOH . C 3 HOH A 7 706 706 HOH HOH . C 3 HOH A 8 707 707 HOH HOH . C 3 HOH A 9 708 708 HOH HOH . C 3 HOH A 10 709 709 HOH HOH . C 3 HOH A 11 710 710 HOH HOH . C 3 HOH A 12 712 712 HOH HOH . C 3 HOH A 13 714 714 HOH HOH . C 3 HOH A 14 715 715 HOH HOH . C 3 HOH A 15 716 716 HOH HOH . C 3 HOH A 16 717 717 HOH HOH . C 3 HOH A 17 718 718 HOH HOH . C 3 HOH A 18 719 719 HOH HOH . C 3 HOH A 19 720 720 HOH HOH . C 3 HOH A 20 721 721 HOH HOH . C 3 HOH A 21 722 722 HOH HOH . C 3 HOH A 22 723 723 HOH HOH . C 3 HOH A 23 724 724 HOH HOH . C 3 HOH A 24 726 726 HOH HOH . C 3 HOH A 25 727 727 HOH HOH . C 3 HOH A 26 729 729 HOH HOH . C 3 HOH A 27 730 730 HOH HOH . C 3 HOH A 28 731 731 HOH HOH . C 3 HOH A 29 733 733 HOH HOH . C 3 HOH A 30 734 734 HOH HOH . C 3 HOH A 31 735 735 HOH HOH . C 3 HOH A 32 736 736 HOH HOH . C 3 HOH A 33 738 738 HOH HOH . C 3 HOH A 34 739 739 HOH HOH . C 3 HOH A 35 740 740 HOH HOH . C 3 HOH A 36 741 741 HOH HOH . C 3 HOH A 37 742 742 HOH HOH . C 3 HOH A 38 743 743 HOH HOH . C 3 HOH A 39 744 744 HOH HOH . C 3 HOH A 40 745 745 HOH HOH . C 3 HOH A 41 746 746 HOH HOH . C 3 HOH A 42 747 747 HOH HOH . C 3 HOH A 43 748 748 HOH HOH . C 3 HOH A 44 749 749 HOH HOH . C 3 HOH A 45 750 750 HOH HOH . C 3 HOH A 46 751 751 HOH HOH . C 3 HOH A 47 752 752 HOH HOH . C 3 HOH A 48 753 753 HOH HOH . C 3 HOH A 49 754 754 HOH HOH . C 3 HOH A 50 755 755 HOH HOH . C 3 HOH A 51 756 756 HOH HOH . C 3 HOH A 52 757 757 HOH HOH . C 3 HOH A 53 758 758 HOH HOH . C 3 HOH A 54 759 759 HOH HOH . C 3 HOH A 55 760 760 HOH HOH . C 3 HOH A 56 761 761 HOH HOH . C 3 HOH A 57 762 762 HOH HOH . C 3 HOH A 58 763 763 HOH HOH . C 3 HOH A 59 764 764 HOH HOH . C 3 HOH A 60 765 765 HOH HOH . C 3 HOH A 61 766 766 HOH HOH . C 3 HOH A 62 767 767 HOH HOH . C 3 HOH A 63 768 768 HOH HOH . C 3 HOH A 64 769 769 HOH HOH . C 3 HOH A 65 770 770 HOH HOH . C 3 HOH A 66 771 771 HOH HOH . C 3 HOH A 67 772 772 HOH HOH . C 3 HOH A 68 773 773 HOH HOH . C 3 HOH A 69 774 774 HOH HOH . C 3 HOH A 70 775 775 HOH HOH . C 3 HOH A 71 776 776 HOH HOH . C 3 HOH A 72 779 779 HOH HOH . C 3 HOH A 73 780 780 HOH HOH . C 3 HOH A 74 781 781 HOH HOH . C 3 HOH A 75 782 782 HOH HOH . C 3 HOH A 76 783 783 HOH HOH . C 3 HOH A 77 784 784 HOH HOH . C 3 HOH A 78 785 785 HOH HOH . C 3 HOH A 79 786 786 HOH HOH . C 3 HOH A 80 787 787 HOH HOH . C 3 HOH A 81 789 789 HOH HOH . C 3 HOH A 82 790 790 HOH HOH . C 3 HOH A 83 791 791 HOH HOH . C 3 HOH A 84 792 792 HOH HOH . C 3 HOH A 85 793 793 HOH HOH . C 3 HOH A 86 794 794 HOH HOH . C 3 HOH A 87 795 795 HOH HOH . C 3 HOH A 88 796 796 HOH HOH . C 3 HOH A 89 797 797 HOH HOH . C 3 HOH A 90 798 798 HOH HOH . C 3 HOH A 91 799 799 HOH HOH . C 3 HOH A 92 800 800 HOH HOH . C 3 HOH A 93 801 801 HOH HOH . C 3 HOH A 94 802 802 HOH HOH . C 3 HOH A 95 803 803 HOH HOH . C 3 HOH A 96 804 804 HOH HOH . C 3 HOH A 97 805 805 HOH HOH . C 3 HOH A 98 806 806 HOH HOH . C 3 HOH A 99 808 808 HOH HOH . C 3 HOH A 100 809 809 HOH HOH . C 3 HOH A 101 810 810 HOH HOH . C 3 HOH A 102 812 812 HOH HOH . C 3 HOH A 103 813 813 HOH HOH . C 3 HOH A 104 814 814 HOH HOH . C 3 HOH A 105 815 815 HOH HOH . C 3 HOH A 106 816 816 HOH HOH . C 3 HOH A 107 817 817 HOH HOH . C 3 HOH A 108 818 818 HOH HOH . C 3 HOH A 109 819 819 HOH HOH . C 3 HOH A 110 820 820 HOH HOH . C 3 HOH A 111 822 822 HOH HOH . C 3 HOH A 112 823 823 HOH HOH . C 3 HOH A 113 824 824 HOH HOH . C 3 HOH A 114 825 825 HOH HOH . C 3 HOH A 115 826 826 HOH HOH . C 3 HOH A 116 828 828 HOH HOH . C 3 HOH A 117 829 829 HOH HOH . C 3 HOH A 118 830 830 HOH HOH . C 3 HOH A 119 831 831 HOH HOH . C 3 HOH A 120 832 832 HOH HOH . C 3 HOH A 121 833 833 HOH HOH . C 3 HOH A 122 834 834 HOH HOH . C 3 HOH A 123 835 835 HOH HOH . C 3 HOH A 124 837 837 HOH HOH . C 3 HOH A 125 838 838 HOH HOH . C 3 HOH A 126 839 839 HOH HOH . C 3 HOH A 127 841 841 HOH HOH . C 3 HOH A 128 842 842 HOH HOH . C 3 HOH A 129 843 843 HOH HOH . C 3 HOH A 130 844 844 HOH HOH . C 3 HOH A 131 845 845 HOH HOH . C 3 HOH A 132 846 846 HOH HOH . C 3 HOH A 133 847 847 HOH HOH . C 3 HOH A 134 848 848 HOH HOH . C 3 HOH A 135 849 849 HOH HOH . C 3 HOH A 136 850 850 HOH HOH . C 3 HOH A 137 851 851 HOH HOH . C 3 HOH A 138 852 852 HOH HOH . C 3 HOH A 139 853 853 HOH HOH . C 3 HOH A 140 855 855 HOH HOH . C 3 HOH A 141 856 856 HOH HOH . C 3 HOH A 142 858 858 HOH HOH . C 3 HOH A 143 859 859 HOH HOH . C 3 HOH A 144 860 860 HOH HOH . C 3 HOH A 145 861 861 HOH HOH . C 3 HOH A 146 862 862 HOH HOH . C 3 HOH A 147 863 863 HOH HOH . C 3 HOH A 148 864 864 HOH HOH . C 3 HOH A 149 865 865 HOH HOH . C 3 HOH A 150 866 866 HOH HOH . C 3 HOH A 151 867 867 HOH HOH . C 3 HOH A 152 868 868 HOH HOH . C 3 HOH A 153 869 869 HOH HOH . C 3 HOH A 154 870 870 HOH HOH . C 3 HOH A 155 871 871 HOH HOH . C 3 HOH A 156 872 872 HOH HOH . C 3 HOH A 157 873 873 HOH HOH . C 3 HOH A 158 874 874 HOH HOH . C 3 HOH A 159 875 875 HOH HOH . C 3 HOH A 160 877 877 HOH HOH . C 3 HOH A 161 879 879 HOH HOH . C 3 HOH A 162 880 880 HOH HOH . C 3 HOH A 163 881 881 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 18.127 19.843 2.569 1 12.14 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . B 2 16.775 20.411 2.758 1 9.84 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . B 2 18.802 18.87 3.369 1 11.7 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . B 2 18.195 19.236 1.063 1 11.81 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . B 2 17.622 19.959 0.025 1 9.53 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . B 2 17.605 18.901 -1.202 1 10.67 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . B 2 16.536 17.857 -0.989 1 12.67 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . B 2 17.202 19.57 -2.585 1 8.86 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . B 2 18.465 20.027 -3.094 1 15.86 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . B 2 16.588 18.348 -3.312 1 10.62 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . B 2 17.735 17.398 -3.541 1 12.75 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . B 2 15.795 17.615 -2.199 1 10.12 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . B 2 14.453 18.072 -2.121 1 11.58 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . B 2 13.907 18.985 -1.24 1 12.92 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . B 2 12.661 19.154 -1.476 1 13.46 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . B 2 12.374 18.318 -2.559 1 15.51 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . B 2 11.197 18.057 -3.277 1 22.87 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . B 2 9.996 18.624 -3.029 1 17.37 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . B 2 11.292 17.169 -4.294 1 23.89 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . B 2 12.476 16.601 -4.553 1 22.24 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . B 2 13.63 16.773 -3.954 1 14.63 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . B 2 13.487 17.666 -2.951 1 10.46 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . B 2 19.085 21.051 2.311 1 14.97 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . B 2 19.197 22.576 2.908 1 15.25 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . B 2 18.075 23.355 2.527 1 17.39 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . B 2 19.363 22.453 4.412 1 15.4 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . B 2 20.623 23.026 2.368 1 22.88 ? O5D NAP 164 A 1 HETATM 28 P P2B NAP . . . B 2 18.45 17.369 -5.181 1 14.24 ? P2B NAP 164 A 1 HETATM 29 O O1X NAP . . . B 2 19.239 16.07 -5.144 1 13.75 ? O1X NAP 164 A 1 HETATM 30 O O2X NAP . . . B 2 17.228 17.473 -6.029 1 12.16 ? O2X NAP 164 A 1 HETATM 31 O O3X NAP . . . B 2 19.243 18.628 -5.133 1 13.65 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #