data_1RAM # _model_server_result.job_id 8KGvYNdPmLWkG0mOiJmq3A _model_server_result.datetime_utc '2024-11-05 00:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ram # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 1RAM # _exptl.entry_id 1RAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RAM _cell.length_a 65.69 _cell.length_b 81.08 _cell.length_c 167.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DC-DG PAIR' hydrog1 A O2 DC 1 C DC 1 1_555 B N1 DG 20 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DG 2 C DG 2 1_555 B N3 DC 19 D DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 DG 2 C DG 2 1_555 B O2 DC 19 D DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 DG 2 C DG 2 1_555 B N4 DC 19 D DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog5 A N1 DG 3 C DG 3 1_555 B O6 DG 17 D DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog6 A N1 DG 3 C DG 3 1_555 B N3 DC 18 D DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog7 A O2 DC 4 C DC 4 1_555 B N2 DG 17 D DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DT 5 C DT 5 1_555 B N1 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 DT 5 C DT 5 1_555 B N6 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 6 C DG 6 1_555 B N3 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 6 C DG 6 1_555 B O2 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 6 C DG 6 1_555 B N4 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 7 C DG 7 1_555 B N3 DC 14 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 7 C DG 7 1_555 B O2 DC 14 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 7 C DG 7 1_555 B N4 DC 14 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog16 A N1 DA 8 C DA 8 1_555 B N3 DT 13 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DA 9 C DA 9 1_555 B N3 DT 12 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 DA 9 C DA 9 1_555 B O4 DT 12 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DA 10 C DA 10 1_555 B N3 DT 11 D DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N6 DA 10 C DA 10 1_555 B O4 DT 11 D DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog21 A N3 DT 11 C DT 11 1_555 B N1 DA 10 D DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DT 12 C DT 12 1_555 B N1 DA 9 D DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 DT 12 C DT 12 1_555 B N6 DA 9 D DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DT 13 C DT 13 1_555 B N1 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O4 DT 13 C DT 13 1_555 B N6 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DC 14 C DC 14 1_555 B N1 DG 7 D DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N4 DC 14 C DC 14 1_555 B O6 DG 7 D DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O2 DC 14 C DC 14 1_555 B N2 DG 7 D DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DT MISPAIR' hydrog29 A N4 DC 15 C DC 15 1_555 B O4 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N3 DC 15 C DC 15 1_555 B N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N4 DC 15 C DC 15 1_555 B O6 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O2 DC 15 C DC 15 1_555 B N2 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N1 DA 16 C DA 16 1_555 B N3 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N6 DA 16 C DA 16 1_555 B O4 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N1 DG 17 C DG 17 1_555 B N3 DC 4 D DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N2 DG 17 C DG 17 1_555 B O2 DC 4 D DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O6 DG 17 C DG 17 1_555 B N4 DC 4 D DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 DC 18 C DC 18 1_555 B N1 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N4 DC 18 C DC 18 1_555 B O6 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O2 DC 18 C DC 18 1_555 B N2 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N3 DC 19 C DC 19 1_555 B N1 DG 2 D DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N4 DC 19 C DC 19 1_555 B O6 DG 2 D DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A O2 DC 19 C DC 19 1_555 B N2 DG 2 D DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog44 A O6 DG 20 C DG 20 1_555 B N4 DC 1 D DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 232 n n S1 HS1 DTT sing 233 n n C1 C2 DTT sing 234 n n C1 H11 DTT sing 235 n n C1 H12 DTT sing 236 n n C2 O2 DTT sing 237 n n C2 C3 DTT sing 238 n n C2 H2 DTT sing 239 n n O2 HO2 DTT sing 240 n n C3 O3 DTT sing 241 n n C3 C4 DTT sing 242 n n C3 H3 DTT sing 243 n n O3 HO3 DTT sing 244 n n C4 S4 DTT sing 245 n n C4 H41 DTT sing 246 n n C4 H42 DTT sing 247 n n S4 HS2 DTT sing 248 n n # _atom_sites.entry_id 1RAM _atom_sites.fract_transf_matrix[1][1] 0.015223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DTT A 1 1 1 DTT DTT . F 3 DTT B 1 2 1 DTT DTT . G 4 HOH C 1 301 301 HOH HOH . G 4 HOH C 2 308 308 HOH HOH . G 4 HOH C 3 312 312 HOH HOH . H 4 HOH D 1 315 315 HOH HOH . H 4 HOH D 2 317 317 HOH HOH . I 4 HOH A 1 303 303 HOH HOH . I 4 HOH A 2 304 304 HOH HOH . I 4 HOH A 3 309 309 HOH HOH . I 4 HOH A 4 310 310 HOH HOH . I 4 HOH A 5 316 316 HOH HOH . J 4 HOH B 1 302 302 HOH HOH . J 4 HOH B 2 305 305 HOH HOH . J 4 HOH B 3 306 306 HOH HOH . J 4 HOH B 4 311 311 HOH HOH . J 4 HOH B 5 313 313 HOH HOH . J 4 HOH B 6 314 314 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . E 3 13.974 45.662 68.953 1 39.57 ? S1 DTT 1 A 1 HETATM 2 C C1 DTT . . . E 3 15.447 45.286 69.934 1 57.16 ? C1 DTT 1 A 1 HETATM 3 C C2 DTT . . . E 3 16.628 44.645 69.193 1 64.61 ? C2 DTT 1 A 1 HETATM 4 O O2 DTT . . . E 3 17.062 45.489 68.117 1 67.42 ? O2 DTT 1 A 1 HETATM 5 C C3 DTT . . . E 3 17.806 44.399 70.171 1 70.81 ? C3 DTT 1 A 1 HETATM 6 O O3 DTT . . . E 3 19.048 44.713 69.521 1 64.47 ? O3 DTT 1 A 1 HETATM 7 C C4 DTT . . . E 3 17.831 42.932 70.651 1 80.43 ? C4 DTT 1 A 1 HETATM 8 S S4 DTT . . . E 3 16.244 42.209 71.244 1 88.84 ? S4 DTT 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #