data_1RAO # _model_server_result.job_id FNuOZD9373MAJKlPwa91mg _model_server_result.datetime_utc '2024-11-21 21:40:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":181}' # _entry.id 1RAO # _exptl.entry_id 1RAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.123 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-HYDROXYMETHYLPTERIN-DIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.46 _cell.angle_gamma 90 _cell.entry_id 1RAO _cell.length_a 79.689 _cell.length_b 52.918 _cell.length_c 36.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H9 N5 O8 P2' _chem_comp.formula_weight 353.123 _chem_comp.id HH2 _chem_comp.mon_nstd_flag . _chem_comp.name 6-HYDROXYMETHYLPTERIN-DIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[PTERIN-6-YL METHANYL]-PHOSPHONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HH2 doub 155 n y N1 C9 HH2 sing 156 n y C2 C3 HH2 sing 157 n y C2 C11 HH2 sing 158 n n C3 N4 HH2 doub 159 n y C3 H31 HH2 sing 160 n n N4 C10 HH2 sing 161 n y N5 C6 HH2 doub 162 n y N5 C10 HH2 sing 163 n y C6 N6 HH2 sing 164 n n C6 N7 HH2 sing 165 n y N6 HN61 HH2 sing 166 n n N6 HN62 HH2 sing 167 n n N7 C8 HH2 sing 168 n y N7 HN7 HH2 sing 169 n n C8 O8 HH2 doub 170 n n C8 C9 HH2 sing 171 n y C9 C10 HH2 doub 172 n y C11 O4 HH2 sing 173 n n C11 H111 HH2 sing 174 n n C11 H112 HH2 sing 175 n n O4 P1 HH2 sing 176 n n P1 O1P HH2 doub 177 n n P1 O2P HH2 sing 178 n n P1 O3P HH2 sing 179 n n O2P HOP2 HH2 sing 180 n n O3P P2 HH2 sing 181 n n P2 O4P HH2 doub 182 n n P2 O5P HH2 sing 183 n n P2 O6P HH2 sing 184 n n O5P HOP5 HH2 sing 185 n n O6P HOP6 HH2 sing 186 n n # _atom_sites.entry_id 1RAO _atom_sites.fract_transf_matrix[1][1] 0.012549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 171 171 AMP AMP . C 3 HH2 A 1 181 181 HH2 HH2 . D 4 HOH A 1 201 201 HOH HOH . D 4 HOH A 2 202 202 HOH HOH . D 4 HOH A 3 203 203 HOH HOH . D 4 HOH A 4 204 204 HOH HOH . D 4 HOH A 5 205 205 HOH HOH . D 4 HOH A 6 206 206 HOH HOH . D 4 HOH A 7 207 207 HOH HOH . D 4 HOH A 8 208 208 HOH HOH . D 4 HOH A 9 209 209 HOH HOH . D 4 HOH A 10 210 210 HOH HOH . D 4 HOH A 11 211 211 HOH HOH . D 4 HOH A 12 212 212 HOH HOH . D 4 HOH A 13 213 213 HOH HOH . D 4 HOH A 14 214 214 HOH HOH . D 4 HOH A 15 215 215 HOH HOH . D 4 HOH A 16 216 216 HOH HOH . D 4 HOH A 17 217 217 HOH HOH . D 4 HOH A 18 218 218 HOH HOH . D 4 HOH A 19 219 219 HOH HOH . D 4 HOH A 20 220 220 HOH HOH . D 4 HOH A 21 221 221 HOH HOH . D 4 HOH A 22 222 222 HOH HOH . D 4 HOH A 23 223 223 HOH HOH . D 4 HOH A 24 224 224 HOH HOH . D 4 HOH A 25 225 225 HOH HOH . D 4 HOH A 26 226 226 HOH HOH . D 4 HOH A 27 227 227 HOH HOH . D 4 HOH A 28 228 228 HOH HOH . D 4 HOH A 29 229 229 HOH HOH . D 4 HOH A 30 230 230 HOH HOH . D 4 HOH A 31 231 231 HOH HOH . D 4 HOH A 32 232 232 HOH HOH . D 4 HOH A 33 233 233 HOH HOH . D 4 HOH A 34 234 234 HOH HOH . D 4 HOH A 35 235 235 HOH HOH . D 4 HOH A 36 236 236 HOH HOH . D 4 HOH A 37 237 237 HOH HOH . D 4 HOH A 38 238 238 HOH HOH . D 4 HOH A 39 239 239 HOH HOH . D 4 HOH A 40 240 240 HOH HOH . D 4 HOH A 41 241 241 HOH HOH . D 4 HOH A 42 242 242 HOH HOH . D 4 HOH A 43 243 243 HOH HOH . D 4 HOH A 44 244 244 HOH HOH . D 4 HOH A 45 245 245 HOH HOH . D 4 HOH A 46 246 246 HOH HOH . D 4 HOH A 47 247 247 HOH HOH . D 4 HOH A 48 248 248 HOH HOH . D 4 HOH A 49 249 249 HOH HOH . D 4 HOH A 50 250 250 HOH HOH . D 4 HOH A 51 251 251 HOH HOH . D 4 HOH A 52 252 252 HOH HOH . D 4 HOH A 53 253 253 HOH HOH . D 4 HOH A 54 254 254 HOH HOH . D 4 HOH A 55 255 255 HOH HOH . D 4 HOH A 56 256 256 HOH HOH . D 4 HOH A 57 257 257 HOH HOH . D 4 HOH A 58 258 258 HOH HOH . D 4 HOH A 59 259 259 HOH HOH . D 4 HOH A 60 260 260 HOH HOH . D 4 HOH A 61 261 261 HOH HOH . D 4 HOH A 62 262 262 HOH HOH . D 4 HOH A 63 263 263 HOH HOH . D 4 HOH A 64 264 264 HOH HOH . D 4 HOH A 65 265 265 HOH HOH . D 4 HOH A 66 266 266 HOH HOH . D 4 HOH A 67 267 267 HOH HOH . D 4 HOH A 68 268 268 HOH HOH . D 4 HOH A 69 269 269 HOH HOH . D 4 HOH A 70 270 270 HOH HOH . D 4 HOH A 71 271 271 HOH HOH . D 4 HOH A 72 272 272 HOH HOH . D 4 HOH A 73 273 273 HOH HOH . D 4 HOH A 74 274 274 HOH HOH . D 4 HOH A 75 275 275 HOH HOH . D 4 HOH A 76 276 276 HOH HOH . D 4 HOH A 77 277 277 HOH HOH . D 4 HOH A 78 278 278 HOH HOH . D 4 HOH A 79 279 279 HOH HOH . D 4 HOH A 80 280 280 HOH HOH . D 4 HOH A 81 281 281 HOH HOH . D 4 HOH A 82 282 282 HOH HOH . D 4 HOH A 83 283 283 HOH HOH . D 4 HOH A 84 284 284 HOH HOH . D 4 HOH A 85 285 285 HOH HOH . D 4 HOH A 86 286 286 HOH HOH . D 4 HOH A 87 287 287 HOH HOH . D 4 HOH A 88 288 288 HOH HOH . D 4 HOH A 89 289 289 HOH HOH . D 4 HOH A 90 290 290 HOH HOH . D 4 HOH A 91 291 291 HOH HOH . D 4 HOH A 92 292 292 HOH HOH . D 4 HOH A 93 293 293 HOH HOH . D 4 HOH A 94 294 294 HOH HOH . D 4 HOH A 95 295 295 HOH HOH . D 4 HOH A 96 296 296 HOH HOH . D 4 HOH A 97 297 297 HOH HOH . D 4 HOH A 98 298 298 HOH HOH . D 4 HOH A 99 299 299 HOH HOH . D 4 HOH A 100 300 300 HOH HOH . D 4 HOH A 101 301 301 HOH HOH . D 4 HOH A 102 302 302 HOH HOH . D 4 HOH A 103 303 303 HOH HOH . D 4 HOH A 104 304 304 HOH HOH . D 4 HOH A 105 305 305 HOH HOH . D 4 HOH A 106 306 306 HOH HOH . D 4 HOH A 107 307 307 HOH HOH . D 4 HOH A 108 308 308 HOH HOH . D 4 HOH A 109 309 309 HOH HOH . D 4 HOH A 110 310 310 HOH HOH . D 4 HOH A 111 311 311 HOH HOH . D 4 HOH A 112 312 312 HOH HOH . D 4 HOH A 113 313 313 HOH HOH . D 4 HOH A 114 314 314 HOH HOH . D 4 HOH A 115 315 315 HOH HOH . D 4 HOH A 116 316 316 HOH HOH . D 4 HOH A 117 317 317 HOH HOH . D 4 HOH A 118 318 318 HOH HOH . D 4 HOH A 119 319 319 HOH HOH . D 4 HOH A 120 320 320 HOH HOH . D 4 HOH A 121 321 321 HOH HOH . D 4 HOH A 122 322 322 HOH HOH . D 4 HOH A 123 323 323 HOH HOH . D 4 HOH A 124 324 324 HOH HOH . D 4 HOH A 125 325 325 HOH HOH . D 4 HOH A 126 326 326 HOH HOH . D 4 HOH A 127 327 327 HOH HOH . D 4 HOH A 128 328 328 HOH HOH . D 4 HOH A 129 329 329 HOH HOH . D 4 HOH A 130 330 330 HOH HOH . D 4 HOH A 131 331 331 HOH HOH . D 4 HOH A 132 332 332 HOH HOH . D 4 HOH A 133 333 333 HOH HOH . D 4 HOH A 134 334 334 HOH HOH . D 4 HOH A 135 335 335 HOH HOH . D 4 HOH A 136 336 336 HOH HOH . D 4 HOH A 137 337 337 HOH HOH . D 4 HOH A 138 338 338 HOH HOH . D 4 HOH A 139 339 339 HOH HOH . D 4 HOH A 140 340 340 HOH HOH . D 4 HOH A 141 341 341 HOH HOH . D 4 HOH A 142 342 342 HOH HOH . D 4 HOH A 143 343 343 HOH HOH . D 4 HOH A 144 344 344 HOH HOH . D 4 HOH A 145 345 345 HOH HOH . D 4 HOH A 146 346 346 HOH HOH . D 4 HOH A 147 347 347 HOH HOH . D 4 HOH A 148 348 348 HOH HOH . D 4 HOH A 149 349 349 HOH HOH . D 4 HOH A 150 350 350 HOH HOH . D 4 HOH A 151 351 351 HOH HOH . D 4 HOH A 152 352 352 HOH HOH . D 4 HOH A 153 353 353 HOH HOH . D 4 HOH A 154 354 354 HOH HOH . D 4 HOH A 155 355 355 HOH HOH . D 4 HOH A 156 356 356 HOH HOH . D 4 HOH A 157 357 357 HOH HOH . D 4 HOH A 158 358 358 HOH HOH . D 4 HOH A 159 359 359 HOH HOH . D 4 HOH A 160 360 360 HOH HOH . D 4 HOH A 161 361 361 HOH HOH . D 4 HOH A 162 362 362 HOH HOH . D 4 HOH A 163 363 363 HOH HOH . D 4 HOH A 164 364 364 HOH HOH . D 4 HOH A 165 365 365 HOH HOH . D 4 HOH A 166 366 366 HOH HOH . D 4 HOH A 167 367 367 HOH HOH . D 4 HOH A 168 368 368 HOH HOH . D 4 HOH A 169 369 369 HOH HOH . D 4 HOH A 170 370 370 HOH HOH . D 4 HOH A 171 371 371 HOH HOH . D 4 HOH A 172 372 372 HOH HOH . D 4 HOH A 173 373 373 HOH HOH . D 4 HOH A 174 374 374 HOH HOH . D 4 HOH A 175 375 375 HOH HOH . D 4 HOH A 176 376 376 HOH HOH . D 4 HOH A 177 377 377 HOH HOH . D 4 HOH A 178 378 378 HOH HOH . D 4 HOH A 179 379 379 HOH HOH . D 4 HOH A 180 380 380 HOH HOH . D 4 HOH A 181 381 381 HOH HOH . D 4 HOH A 182 382 382 HOH HOH . D 4 HOH A 183 383 383 HOH HOH . D 4 HOH A 184 384 384 HOH HOH . D 4 HOH A 185 385 385 HOH HOH . D 4 HOH A 186 386 386 HOH HOH . D 4 HOH A 187 387 387 HOH HOH . D 4 HOH A 188 388 388 HOH HOH . D 4 HOH A 189 389 389 HOH HOH . D 4 HOH A 190 390 390 HOH HOH . D 4 HOH A 191 391 391 HOH HOH . D 4 HOH A 192 392 392 HOH HOH . D 4 HOH A 193 393 393 HOH HOH . D 4 HOH A 194 394 394 HOH HOH . D 4 HOH A 195 395 395 HOH HOH . D 4 HOH A 196 396 396 HOH HOH . D 4 HOH A 197 397 397 HOH HOH . D 4 HOH A 198 398 398 HOH HOH . D 4 HOH A 199 399 399 HOH HOH . D 4 HOH A 200 400 400 HOH HOH . D 4 HOH A 201 401 401 HOH HOH . D 4 HOH A 202 402 402 HOH HOH . D 4 HOH A 203 403 403 HOH HOH . D 4 HOH A 204 404 404 HOH HOH . D 4 HOH A 205 405 405 HOH HOH . D 4 HOH A 206 406 406 HOH HOH . D 4 HOH A 207 407 407 HOH HOH . D 4 HOH A 208 408 408 HOH HOH . D 4 HOH A 209 409 409 HOH HOH . D 4 HOH A 210 410 410 HOH HOH . D 4 HOH A 211 411 411 HOH HOH . D 4 HOH A 212 412 412 HOH HOH . D 4 HOH A 213 413 413 HOH HOH . D 4 HOH A 214 414 414 HOH HOH . D 4 HOH A 215 415 415 HOH HOH . D 4 HOH A 216 416 416 HOH HOH . D 4 HOH A 217 417 417 HOH HOH . D 4 HOH A 218 418 418 HOH HOH . D 4 HOH A 219 419 419 HOH HOH . D 4 HOH A 220 420 420 HOH HOH . D 4 HOH A 221 421 421 HOH HOH . D 4 HOH A 222 422 422 HOH HOH . D 4 HOH A 223 423 423 HOH HOH . D 4 HOH A 224 424 424 HOH HOH . D 4 HOH A 225 425 425 HOH HOH . D 4 HOH A 226 426 426 HOH HOH . D 4 HOH A 227 427 427 HOH HOH . D 4 HOH A 228 428 428 HOH HOH . D 4 HOH A 229 429 429 HOH HOH . D 4 HOH A 230 430 430 HOH HOH . D 4 HOH A 231 431 431 HOH HOH . D 4 HOH A 232 432 432 HOH HOH . D 4 HOH A 233 433 433 HOH HOH . D 4 HOH A 234 434 434 HOH HOH . D 4 HOH A 235 435 435 HOH HOH . D 4 HOH A 236 436 436 HOH HOH . D 4 HOH A 237 437 437 HOH HOH . D 4 HOH A 238 438 438 HOH HOH . D 4 HOH A 239 439 439 HOH HOH . D 4 HOH A 240 440 440 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HH2 . . . C 3 25.055 4.383 9.662 1 32.21 ? N1 HH2 181 A 1 HETATM 2 C C2 HH2 . . . C 3 25.204 5.667 10.261 1 38.8 ? C2 HH2 181 A 1 HETATM 3 C C3 HH2 . . . C 3 26.437 6.277 9.995 1 37.98 ? C3 HH2 181 A 1 HETATM 4 N N4 HH2 . . . C 3 27.363 5.704 9.176 1 32.72 ? N4 HH2 181 A 1 HETATM 5 N N5 HH2 . . . C 3 28.085 3.776 7.586 1 29.62 ? N5 HH2 181 A 1 HETATM 6 C C6 HH2 . . . C 3 27.731 2.61 7.124 1 25.71 ? C6 HH2 181 A 1 HETATM 7 N N6 HH2 . . . C 3 28.815 2.135 6.266 1 36.08 ? N6 HH2 181 A 1 HETATM 8 N N7 HH2 . . . C 3 26.577 1.84 7.329 1 24.34 ? N7 HH2 181 A 1 HETATM 9 C C8 HH2 . . . C 3 25.645 2.401 8.135 1 25.21 ? C8 HH2 181 A 1 HETATM 10 O O8 HH2 . . . C 3 24.599 1.803 8.308 1 26.75 ? O8 HH2 181 A 1 HETATM 11 C C9 HH2 . . . C 3 25.899 3.706 8.78 1 28.12 ? C9 HH2 181 A 1 HETATM 12 C C10 HH2 . . . C 3 27.052 4.498 8.494 1 29.32 ? C10 HH2 181 A 1 HETATM 13 C C11 HH2 . . . C 3 24.076 6.105 11.122 1 45.38 ? C11 HH2 181 A 1 HETATM 14 O O4 HH2 . A . C 3 23.347 7.307 10.537 0.5 50.8 ? O4 HH2 181 A 1 HETATM 15 O O4 HH2 . B . C 3 23.631 7.513 10.678 0.5 55.78 ? O4 HH2 181 A 1 HETATM 16 P P1 HH2 . A . C 3 22.186 8.127 11.091 0.5 53.11 ? P1 HH2 181 A 1 HETATM 17 P P1 HH2 . B . C 3 24.228 8.879 11.001 0.5 61.9 ? P1 HH2 181 A 1 HETATM 18 O O1P HH2 . A . C 3 21.059 7.435 11.824 0.5 43.71 ? O1P HH2 181 A 1 HETATM 19 O O1P HH2 . B . C 3 23.908 10.064 10.119 0.5 68.22 ? O1P HH2 181 A 1 HETATM 20 O O2P HH2 . A . C 3 21.563 9.046 10.052 0.5 29.06 ? O2P HH2 181 A 1 HETATM 21 O O2P HH2 . B . C 3 25.737 8.841 11.189 0.5 76.61 ? O2P HH2 181 A 1 HETATM 22 O O3P HH2 . A . C 3 22.807 9.183 12.191 0.5 81.3 ? O3P HH2 181 A 1 HETATM 23 O O3P HH2 . B . C 3 23.683 9.316 12.492 0.5 85.19 ? O3P HH2 181 A 1 HETATM 24 P P2 HH2 . A . C 3 23.902 8.742 13.337 0.5 83.16 ? P2 HH2 181 A 1 HETATM 25 P P2 HH2 . B . C 3 23.87 8.371 13.827 0.5 86.03 ? P2 HH2 181 A 1 HETATM 26 O O4P HH2 . A . C 3 25.133 8.119 12.716 0.5 76.38 ? O4P HH2 181 A 1 HETATM 27 O O4P HH2 . B . C 3 25.147 7.563 13.758 0.5 89.19 ? O4P HH2 181 A 1 HETATM 28 O O5P HH2 . A . C 3 24.325 9.924 14.142 0.5 82.34 ? O5P HH2 181 A 1 HETATM 29 O O5P HH2 . B . C 3 23.904 9.206 15.061 0.5 87.01 ? O5P HH2 181 A 1 HETATM 30 O O6P HH2 . A . C 3 23.258 7.707 14.29 0.5 86.18 ? O6P HH2 181 A 1 HETATM 31 O O6P HH2 . B . C 3 22.677 7.391 13.932 0.5 86.45 ? O6P HH2 181 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #