data_1RAQ # _model_server_result.job_id PxjGe1irRsQtdVaQsx8xFg _model_server_result.datetime_utc '2024-11-24 12:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1raq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":104}' # _entry.id 1RAQ # _exptl.entry_id 1RAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RAQ _cell.length_a 36.37 _cell.length_b 36.37 _cell.length_c 137.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -36.37 36.37 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 C CAB HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 C CAC HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? covale ? covale3 A C PRO 76 A PRO 71 1_555 A N M3L 77 A M3L 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C M3L 77 A M3L 72 1_555 A N LYS 78 A LYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 C FE HEC . A HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RAQ _atom_sites.fract_transf_matrix[1][1] 0.027495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 105 105 SO4 SO4 . C 3 HEC A 1 104 104 HEC HEM . D 4 HOH A 1 106 106 HOH HOH . D 4 HOH A 2 107 107 HOH HOH . D 4 HOH A 3 108 108 HOH HOH . D 4 HOH A 4 109 109 HOH HOH . D 4 HOH A 5 110 110 HOH HOH . D 4 HOH A 6 111 111 HOH HOH . D 4 HOH A 7 112 112 HOH HOH . D 4 HOH A 8 113 113 HOH HOH . D 4 HOH A 9 114 114 HOH HOH . D 4 HOH A 10 115 115 HOH HOH . D 4 HOH A 11 116 116 HOH HOH . D 4 HOH A 12 117 117 HOH HOH . D 4 HOH A 13 118 118 HOH HOH . D 4 HOH A 14 119 119 HOH HOH . D 4 HOH A 15 120 120 HOH HOH . D 4 HOH A 16 121 121 HOH HOH . D 4 HOH A 17 122 122 HOH HOH . D 4 HOH A 18 123 123 HOH HOH . D 4 HOH A 19 124 124 HOH HOH . D 4 HOH A 20 125 125 HOH HOH . D 4 HOH A 21 126 126 HOH HOH . D 4 HOH A 22 127 127 HOH HOH . D 4 HOH A 23 128 128 HOH HOH . D 4 HOH A 24 129 129 HOH HOH . D 4 HOH A 25 130 130 HOH HOH . D 4 HOH A 26 131 131 HOH HOH . D 4 HOH A 27 132 132 HOH HOH . D 4 HOH A 28 133 133 HOH HOH . D 4 HOH A 29 134 134 HOH HOH . D 4 HOH A 30 135 135 HOH HOH . D 4 HOH A 31 136 136 HOH HOH . D 4 HOH A 32 137 137 HOH HOH . D 4 HOH A 33 138 138 HOH HOH . D 4 HOH A 34 139 139 HOH HOH . D 4 HOH A 35 140 140 HOH HOH . D 4 HOH A 36 141 141 HOH HOH . D 4 HOH A 37 142 142 HOH HOH . D 4 HOH A 38 143 143 HOH HOH . D 4 HOH A 39 144 144 HOH HOH . D 4 HOH A 40 145 145 HOH HOH . D 4 HOH A 41 146 146 HOH HOH . D 4 HOH A 42 147 147 HOH HOH . D 4 HOH A 43 148 148 HOH HOH . D 4 HOH A 44 149 149 HOH HOH . D 4 HOH A 45 150 150 HOH HOH . D 4 HOH A 46 151 151 HOH HOH . D 4 HOH A 47 152 152 HOH HOH . D 4 HOH A 48 153 153 HOH HOH . D 4 HOH A 49 154 154 HOH HOH . D 4 HOH A 50 155 155 HOH HOH . D 4 HOH A 51 156 156 HOH HOH . D 4 HOH A 52 157 157 HOH HOH . D 4 HOH A 53 158 158 HOH HOH . D 4 HOH A 54 159 159 HOH HOH . D 4 HOH A 55 160 160 HOH HOH . D 4 HOH A 56 161 161 HOH HOH . D 4 HOH A 57 162 162 HOH HOH . D 4 HOH A 58 163 163 HOH HOH . D 4 HOH A 59 164 164 HOH HOH . D 4 HOH A 60 165 165 HOH HOH . D 4 HOH A 61 166 166 HOH HOH . D 4 HOH A 62 167 167 HOH HOH . D 4 HOH A 63 168 168 HOH HOH . D 4 HOH A 64 169 169 HOH HOH . D 4 HOH A 65 170 170 HOH HOH . D 4 HOH A 66 171 171 HOH HOH . D 4 HOH A 67 172 172 HOH HOH . D 4 HOH A 68 173 173 HOH HOH . D 4 HOH A 69 174 174 HOH HOH . D 4 HOH A 70 175 175 HOH HOH . D 4 HOH A 71 176 176 HOH HOH . D 4 HOH A 72 177 177 HOH HOH . D 4 HOH A 73 178 178 HOH HOH . D 4 HOH A 74 179 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 3 2.611 20.867 13.178 1 9.39 ? FE HEC 104 A 1 HETATM 2 C CHA HEC . . . C 3 4.85 18.559 14.268 1 4.57 ? CHA HEC 104 A 1 HETATM 3 C CHB HEC . . . C 3 3.806 20.642 10.029 1 5.58 ? CHB HEC 104 A 1 HETATM 4 C CHC HEC . . . C 3 -0.022 22.784 12.064 1 6.87 ? CHC HEC 104 A 1 HETATM 5 C CHD HEC . . . C 3 1.853 21.72 16.387 1 4.26 ? CHD HEC 104 A 1 HETATM 6 N NA HEC . . . C 3 4.078 19.818 12.305 1 7.08 ? NA HEC 104 A 1 HETATM 7 C C1A HEC . . . C 3 4.851 18.835 12.918 1 7.57 ? C1A HEC 104 A 1 HETATM 8 C C2A HEC . . . C 3 5.615 18.143 11.888 1 6.53 ? C2A HEC 104 A 1 HETATM 9 C C3A HEC . . . C 3 5.306 18.719 10.695 1 6.89 ? C3A HEC 104 A 1 HETATM 10 C C4A HEC . . . C 3 4.356 19.761 10.931 1 6.95 ? C4A HEC 104 A 1 HETATM 11 C CMA HEC . . . C 3 5.874 18.319 9.309 1 8.72 ? CMA HEC 104 A 1 HETATM 12 C CAA HEC . . . C 3 6.588 16.995 12.193 1 3.52 ? CAA HEC 104 A 1 HETATM 13 C CBA HEC . . . C 3 7.983 17.636 12.46 1 5.83 ? CBA HEC 104 A 1 HETATM 14 C CGA HEC . . . C 3 9.207 16.817 12.54 1 5.88 ? CGA HEC 104 A 1 HETATM 15 O O1A HEC . . . C 3 10.325 17.448 12.632 1 8.39 ? O1A HEC 104 A 1 HETATM 16 O O2A HEC . . . C 3 9.168 15.569 12.465 1 8.46 ? O2A HEC 104 A 1 HETATM 17 N NB HEC . . . C 3 1.973 21.561 11.384 1 7.24 ? NB HEC 104 A 1 HETATM 18 C C1B HEC . . . C 3 2.68 21.424 10.206 1 7.22 ? C1B HEC 104 A 1 HETATM 19 C C2B HEC . . . C 3 1.97 22.181 9.181 1 7.09 ? C2B HEC 104 A 1 HETATM 20 C C3B HEC . . . C 3 0.909 22.769 9.734 1 6.36 ? C3B HEC 104 A 1 HETATM 21 C C4B HEC . . . C 3 0.902 22.372 11.135 1 6.78 ? C4B HEC 104 A 1 HETATM 22 C CMB HEC . . . C 3 2.487 22.271 7.713 1 6.81 ? CMB HEC 104 A 1 HETATM 23 C CAB HEC . . . C 3 -0.175 23.659 9.078 1 5.36 ? CAB HEC 104 A 1 HETATM 24 C CBB HEC . . . C 3 -1.096 22.951 8.022 1 5.18 ? CBB HEC 104 A 1 HETATM 25 N NC HEC . . . C 3 1.221 22.018 14.033 1 4.99 ? NC HEC 104 A 1 HETATM 26 C C1C HEC . . . C 3 0.249 22.773 13.417 1 6.67 ? C1C HEC 104 A 1 HETATM 27 C C2C HEC . . . C 3 -0.485 23.555 14.402 1 6.9 ? C2C HEC 104 A 1 HETATM 28 C C3C HEC . . . C 3 0.02 23.221 15.614 1 6.64 ? C3C HEC 104 A 1 HETATM 29 C C4C HEC . . . C 3 1.091 22.277 15.406 1 6.73 ? C4C HEC 104 A 1 HETATM 30 C CMC HEC . . . C 3 -1.626 24.531 14.099 1 3.63 ? CMC HEC 104 A 1 HETATM 31 C CAC HEC . . . C 3 -0.36 23.829 16.991 1 6.03 ? CAC HEC 104 A 1 HETATM 32 C CBC HEC . . . C 3 -1.871 23.821 17.323 1 4.89 ? CBC HEC 104 A 1 HETATM 33 N ND HEC . . . C 3 3.277 20.284 14.994 1 6.34 ? ND HEC 104 A 1 HETATM 34 C C1D HEC . . . C 3 2.8 20.738 16.2 1 4.61 ? C1D HEC 104 A 1 HETATM 35 C C2D HEC . . . C 3 3.468 20.009 17.264 1 5.35 ? C2D HEC 104 A 1 HETATM 36 C C3D HEC . . . C 3 4.313 19.171 16.704 1 4.43 ? C3D HEC 104 A 1 HETATM 37 C C4D HEC . . . C 3 4.163 19.26 15.251 1 6.88 ? C4D HEC 104 A 1 HETATM 38 C CMD HEC . . . C 3 3.191 20.244 18.771 1 5.5 ? CMD HEC 104 A 1 HETATM 39 C CAD HEC . . . C 3 5.207 18.12 17.422 1 3.26 ? CAD HEC 104 A 1 HETATM 40 C CBD HEC . . . C 3 4.391 16.832 17.563 1 2.64 ? CBD HEC 104 A 1 HETATM 41 C CGD HEC . . . C 3 5.049 15.725 18.359 1 3.38 ? CGD HEC 104 A 1 HETATM 42 O O1D HEC . . . C 3 6.191 15.815 18.83 1 4.28 ? O1D HEC 104 A 1 HETATM 43 O O2D HEC . . . C 3 4.306 14.734 18.482 1 6.05 ? O2D HEC 104 A 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #